BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645513|ref|NP_207688.1| hypothetical protein
[Helicobacter pylori 26695]
(125 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223548.1| putative [Helicobacter pylori J99] 100 2e-23
ref|NP_223550.1| putative [Helicobacter pylori J99] 45 6e-07
ref|NP_222774.1| putative [Helicobacter pylori J99] 32 0.004
ref|NP_223994.1| putative [Helicobacter pylori J99] 28 0.059
ref|NP_223787.1| putative [Helicobacter pylori J99] 27 0.13
ref|NP_223387.1| putative [Helicobacter pylori J99] 27 0.17
ref|NP_223210.1| DNA transfer protein (Agrobacterium VirB4 ... 26 0.38
ref|NP_222780.1| putative [Helicobacter pylori J99] 26 0.38
ref|NP_223618.1| putative [Helicobacter pylori J99] 25 0.50
ref|NP_223264.1| methyl-accepting chemotaxis protein (MCP) ... 25 0.50
ref|NP_222782.1| putative [Helicobacter pylori J99] 25 0.50
ref|NP_223025.1| putative [Helicobacter pylori J99] 25 0.66
ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [He... 25 0.66
ref|NP_222866.1| SHIKIMATE KINASE I [Helicobacter pylori J99] 25 0.86
ref|NP_222827.1| putative [Helicobacter pylori J99] 25 0.86
ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter py... 24 1.1
ref|NP_223987.1| CARBOXYL-TERMINAL PROTEASE [Helicobacter p... 24 1.1
ref|NP_224093.1| putative [Helicobacter pylori J99] 24 1.5
ref|NP_224063.1| putative thiophene/furan oxidation protein... 24 1.5
ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATE... 24 1.5
ref|NP_223788.1| putative [Helicobacter pylori J99] 23 1.9
ref|NP_222732.1| DNA PRIMASE [Helicobacter pylori J99] 23 1.9
ref|NP_224081.1| DNA POLYMERASE I [Helicobacter pylori J99] 23 2.5
ref|NP_223296.1| putative [Helicobacter pylori J99] 23 2.5
ref|NP_222816.1| methyl-accepting chemotaxis protein (MCP) ... 23 2.5
ref|NP_224149.1| putative [Helicobacter pylori J99] 23 3.3
ref|NP_223610.1| putative [Helicobacter pylori J99] 23 3.3
ref|NP_222912.1| putative [Helicobacter pylori J99] 23 3.3
ref|NP_224146.1| L-ALANINE DEHYDROGENASE [Helicobacter pylo... 22 4.3
ref|NP_223415.1| putative [Helicobacter pylori J99] 22 4.3
ref|NP_223338.1| putative LIPOPOLYSACCHARIDE BIOSYNTHESIS P... 22 4.3
ref|NP_222759.1| phosphomannose isomerase/GDP-mannose pyrop... 22 4.3
ref|NP_224014.1| putative TYPE III DNA MODIFICATION ENZYME ... 22 5.6
ref|NP_223959.1| putative [Helicobacter pylori J99] 22 5.6
ref|NP_223544.1| IS606 TRANSPOSASE [Helicobacter pylori J99] 22 5.6
ref|NP_223452.1| MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN C... 22 7.3
ref|NP_223351.1| putative HYDANTOIN UTILIZATION [Helicobact... 22 7.3
ref|NP_223202.1| cag island protein [Helicobacter pylori J99] 22 7.3
ref|NP_223140.1| OLIGOPEPTIDASE [Helicobacter pylori J99] 22 7.3
ref|NP_222776.1| putative [Helicobacter pylori J99] 22 7.3
ref|NP_223782.1| ATP synthase B' [Helicobacter pylori J99] 21 9.5
ref|NP_223578.1| putative [Helicobacter pylori J99] 21 9.5
ref|NP_223463.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [H... 21 9.5
ref|NP_223197.1| cag island protein [Helicobacter pylori J99] 21 9.5
ref|NP_223108.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [H... 21 9.5
>ref|NP_223548.1| putative [Helicobacter pylori J99]
Length = 83
Score = 99.8 bits (247), Expect = 2e-23
Identities = 58/122 (47%), Positives = 69/122 (56%), Gaps = 40/122 (32%)
Query: 1 MPNTTAKKDYTKYSKKQLFNLIHQLERKIKKMQNDRISFKEKMAKELEKRDQNFKDKIDA 60
MPNTT KDYTKYS+KQLFNLI+QLE
Sbjct: 1 MPNTT-NKDYTKYSQKQLFNLINQLE---------------------------------- 25
Query: 61 LNELLQKISQAFDDKRDCCLGHEIPNIETQQAMRDVGNKETDLIVEDFSSYSNERKRALG 120
QKISQAFDDKR CCLGHEIPN+ETQQA+R N E ++EDFS+++NE K+ +
Sbjct: 26 -----QKISQAFDDKRGCCLGHEIPNLETQQAIRGALNGENLEVIEDFSAWANEIKKEVN 80
Query: 121 VE 122
E
Sbjct: 81 AE 82
>ref|NP_223550.1| putative [Helicobacter pylori J99]
Length = 95
Score = 45.1 bits (105), Expect = 6e-07
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 12/86 (13%)
Query: 1 MPNTTAKKDYTKYSKKQLFNLIHQLE-------RKIKKMQNDRISFKEKMAKELEKRDQN 53
MPNTT KDYTKYS+KQLFN ++ ++ K+K++Q K+++ K L+ + +
Sbjct: 1 MPNTT-NKDYTKYSQKQLFNFLNSIKAKQKRALEKLKEIQTQ----KQRIKKALQFKALH 55
Query: 54 FKDKIDALNELLQKISQAFDDKRDCC 79
+ + E + +++A D K C
Sbjct: 56 LTENGYTIEEEREILARAKDTKNRLC 81
>ref|NP_222774.1| putative [Helicobacter pylori J99]
Length = 327
Score = 32.3 bits (72), Expect = 0.004
Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 4/99 (4%)
Query: 5 TAKKDYTKYSKKQLFNLIHQLERKIKKMQNDRISFKEKMAKELEKRDQNFKDKIDALNEL 64
T + D + L N LE++ ++Q D F EK LEK +Q DK+ L
Sbjct: 166 TTENDKLNHQVTALTNERDSLEQERARLQ-DAHGFLEKRCTNLEKENQRLTDKLKQLESA 224
Query: 65 LQKISQAFDDKRDCCLGHEIPNIETQQAMRDVGNKETDL 103
+ + + R E N++ QA + ++++L
Sbjct: 225 QKSLENTNNQLRQAL---ENSNVQLAQAKEKIAIEKSEL 260
Score = 24.6 bits (52), Expect = 0.86
Identities = 9/28 (32%), Positives = 19/28 (67%)
Query: 41 EKMAKELEKRDQNFKDKIDALNELLQKI 68
++ ++LE+ + K+++D LNE L K+
Sbjct: 294 KRQNRKLEEENIALKERVDGLNEQLSKL 321
>ref|NP_223994.1| putative [Helicobacter pylori J99]
Length = 168
Score = 28.5 bits (62), Expect = 0.059
Identities = 22/101 (21%), Positives = 49/101 (47%), Gaps = 16/101 (15%)
Query: 10 YTKYSKKQLFNLIHQLERKIKKMQNDRISFKEKMAKELE------------KRDQNFKDK 57
Y +K+ ++ + +LE+ + + + + +++ +ELE K D + K
Sbjct: 25 YLYLKEKEFYHKMRRLEKTLDESYQENYLYSKRL-RELEGRLEGLSLEKSAKEDSSLKTT 83
Query: 58 IDALNELLQKISQAFDDKRDCCLGHEIPNIETQQAMRDVGN 98
+ L LQ+I ++ D +RD L +I +E + +D+G+
Sbjct: 84 LSHLYNQLQEIQKSMDKERD-YLEEKIITLENK--FKDMGH 121
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 27.3 bits (59), Expect = 0.13
Identities = 19/66 (28%), Positives = 34/66 (50%), Gaps = 1/66 (1%)
Query: 7 KKDYTKYSKKQLFNLIHQLERKIKKMQNDRISFKEKMAKELEKRDQNFKDKIDALNELLQ 66
+KD+T K L+ + ++I + + FK K+ KE E D++ + +I L +L +
Sbjct: 155 EKDFTDSCWKNLYKKNEEEFKEILEGFKRKEKFKGKILKEFE-NDKHNQSEIVGLEKLKE 213
Query: 67 KISQAF 72
KI F
Sbjct: 214 KIEIVF 219
>ref|NP_223387.1| putative [Helicobacter pylori J99]
Length = 371
Score = 26.9 bits (58), Expect = 0.17
Identities = 13/62 (20%), Positives = 30/62 (47%), Gaps = 3/62 (4%)
Query: 3 NTTAKKDYTKYSKKQLFNLIHQLERKIKKMQNDRISFKEKMAKELEKRDQNFKDKIDALN 62
N K+ + K++ LI +ER+ K+ + F+ + K +E+ ++ KD + +
Sbjct: 160 NNECKEIFGNELKQRKTKLIEDIERRFKECEE---QFRGSVGKNIEQLEERVKDSLAIIK 216
Query: 63 EL 64
+
Sbjct: 217 RI 218
>ref|NP_223210.1| DNA transfer protein (Agrobacterium VirB4 homolog) [Helicobacter
pylori J99]
Length = 983
Score = 25.8 bits (55), Expect = 0.38
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 41 EKMAKELEKRDQNFKDKIDALNELLQK 67
E+ + + + +NFKD+I+ + ELL K
Sbjct: 295 EEFQRIIRAKLENFKDRIELIEELLSK 321
>ref|NP_222780.1| putative [Helicobacter pylori J99]
Length = 500
Score = 25.8 bits (55), Expect = 0.38
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
Query: 4 TTAKKDYTKYSKKQLFNLIHQLERKIKKMQNDRISFKE---KMAKELEKRDQNFKDKIDA 60
T AK K K+ L KIK+ ND + E + ELE+ +N KID
Sbjct: 303 TLAKNRCVKNFKEAL----EGFTEKIKESPNDSNAINEAFDNLETELERATENLSQKIDP 358
Query: 61 LNELLQKISQ 70
+ E + +Q
Sbjct: 359 VLERNENYTQ 368
>ref|NP_223618.1| putative [Helicobacter pylori J99]
Length = 340
Score = 25.4 bits (54), Expect = 0.50
Identities = 12/28 (42%), Positives = 20/28 (70%)
Query: 40 KEKMAKELEKRDQNFKDKIDALNELLQK 67
KEK +LE + Q ++KI+AL++L Q+
Sbjct: 308 KEKHLNDLEDQKQILENKINALSDLEQQ 335
Score = 22.7 bits (47), Expect = 3.3
Identities = 15/51 (29%), Positives = 25/51 (48%)
Query: 6 AKKDYTKYSKKQLFNLIHQLERKIKKMQNDRISFKEKMAKELEKRDQNFKD 56
A+K ++ K+L L QL+ +K + KEK +E++ D KD
Sbjct: 41 AEKLFSALYLKRLKFLNSQLQNSLKSVIESFDYSKEKALEEIKALDLGVKD 91
>ref|NP_223264.1| methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
Length = 433
Score = 25.4 bits (54), Expect = 0.50
Identities = 14/46 (30%), Positives = 25/46 (53%), Gaps = 7/46 (15%)
Query: 25 LERKIKKMQNDRISFKEKMAKELEKRDQNFKDKIDALNELLQKISQ 70
LE K+ M++ KE + D+ F +K D LN++++KI +
Sbjct: 393 LEHKVHLMEDSAKHVKENI-------DKMFYEKQDELNKIIEKIQK 431
>ref|NP_222782.1| putative [Helicobacter pylori J99]
Length = 117
Score = 25.4 bits (54), Expect = 0.50
Identities = 20/92 (21%), Positives = 40/92 (42%), Gaps = 17/92 (18%)
Query: 30 KKMQNDRISFKEKMAKELEKRDQNFKDKIDALNELLQKISQAFDDKRDCCLGHEIPNIET 89
+K++++ + K+A +LE +Q + ++ +NE L+ E +E
Sbjct: 34 QKLKSEALENMLKIAHDLENLEQETQYEMRKINEQLE----------------EAKRLEK 77
Query: 90 QQAMRD-VGNKETDLIVEDFSSYSNERKRALG 120
Q M+D E D ++ + + E KR G
Sbjct: 78 QVDMQDRHSQSEIDRLMREAKEHEREAKRRYG 109
>ref|NP_223025.1| putative [Helicobacter pylori J99]
Length = 501
Score = 25.0 bits (53), Expect = 0.66
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Query: 40 KEKMAKELEKRDQNFKDKIDALNELLQKISQAFDDKRDCCLGHEIPNIETQQ 91
+++ +ELE +D+ ++ +E +Q+ +Q DK E P ETQ+
Sbjct: 354 QDETPQELEAQDEKLQENETPKDESMQESAQNLQDK-------ETPQEETQE 398
>ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [Helicobacter pylori J99]
Length = 681
Score = 25.0 bits (53), Expect = 0.66
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 41 EKMAKELEKRDQNFKDKIDALNELLQKISQAFDDKRD 77
EK K +EK ++FK A E L+ + D+K D
Sbjct: 269 EKDKKRVEKVQESFKALDKAKKEWLKALEAPIDEKED 305
>ref|NP_222866.1| SHIKIMATE KINASE I [Helicobacter pylori J99]
Length = 162
Score = 24.6 bits (52), Expect = 0.86
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 10 YTKYSKKQLFNLIHQLERKIKKMQNDRISFKEKMAKELEKRDQNFKDKIDA---LNELLQ 66
Y K + L ++Q ER+ + + N+ KE K ++N IDA LN L+
Sbjct: 96 YLKMDFETLIKRLNQKEREKRPLLNNLTQAKELFEKRQALYEKNASFIIDARGGLNNSLK 155
Query: 67 KISQ 70
++ Q
Sbjct: 156 QVLQ 159
>ref|NP_222827.1| putative [Helicobacter pylori J99]
Length = 627
Score = 24.6 bits (52), Expect = 0.86
Identities = 18/80 (22%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Query: 2 PNTTAKKDYTKYSKKQLFNLIHQLERKIKKMQNDRIS---FKEKMAK--ELEKRDQNFKD 56
P + + K +KK+ +I K +++ + F EK+ K E K ++ +
Sbjct: 478 PTQSEQAKNLKIAKKKCEEIIKYANEKKTQVEEAFLKVAEFLEKVEKLHEKNKLEELDFE 537
Query: 57 KIDALNELLQKISQAFDDKR 76
+++ L+ + + + FDDKR
Sbjct: 538 ELENLSAEIDNVKELFDDKR 557
>ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter pylori J99]
Length = 831
Score = 24.3 bits (51), Expect = 1.1
Identities = 14/58 (24%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 11 TKYSKKQLFNLIHQLERKIKKMQNDRISFKEKMAKELEKRDQNFKDKIDALNELLQKI 68
T+ +K++ + +HQ K Q ++ F ++ K+++K K + + LN+ QK+
Sbjct: 204 TQKLQKEIKSKVHQ-----KMEQTNKEYFLKEQLKQIQKELGTDKQRDEDLNQYYQKL 256
>ref|NP_223987.1| CARBOXYL-TERMINAL PROTEASE [Helicobacter pylori J99]
Length = 459
Score = 24.3 bits (51), Expect = 1.1
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 2 PNTTAKKDYTKYSKKQL--FNLIHQLERKIKKMQNDRISFKEKMAKELEKRDQNFKDKID 59
P K+D + + K++ F+ + +I+K D+IS E M K +E N
Sbjct: 33 PVKPVKEDPQELAAKRVEAFSRFSNVVTEIEKKYVDKISISEIMTKAIEGLLSNLDAHSA 92
Query: 60 ALNELLQKISQA 71
LNE K QA
Sbjct: 93 YLNEKKFKEFQA 104
>ref|NP_224093.1| putative [Helicobacter pylori J99]
Length = 86
Score = 23.9 bits (50), Expect = 1.5
Identities = 10/29 (34%), Positives = 16/29 (54%)
Query: 15 KKQLFNLIHQLERKIKKMQNDRISFKEKM 43
KK +H LER I ++ + +S K+ M
Sbjct: 24 KKSFEEHVHSLERVIDRLNDPNLSLKDGM 52
>ref|NP_224063.1| putative thiophene/furan oxidation protein [Helicobacter pylori
J99]
Length = 461
Score = 23.9 bits (50), Expect = 1.5
Identities = 17/61 (27%), Positives = 31/61 (49%), Gaps = 1/61 (1%)
Query: 8 KDYTKYSKKQLFNLIHQLERKIKKMQNDRIS-FKEKMAKELEKRDQNFKDKIDALNELLQ 66
K + + ++ L L+ E I + D S F ++++ LEK+ +FKD +D N Q
Sbjct: 161 KIFIEEARNNLLKLLASSEVLIDYSEEDIPSDFLKEVSFNLEKQIASFKDLLDFSNAQKQ 220
Query: 67 K 67
+
Sbjct: 221 R 221
>ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATED IMMUNODOMINANT ANTIGEN
[Helicobacter pylori J99]
Length = 1167
Score = 23.9 bits (50), Expect = 1.5
Identities = 28/119 (23%), Positives = 55/119 (45%), Gaps = 13/119 (10%)
Query: 3 NTTAKKDYTKYSKKQLFNLIHQLERKIKKMQNDRISFKEKMAKELEKRDQNFKDKIDALN 62
N K K ++F LI++ + +R + A+ L+ + DK++ +N
Sbjct: 644 NKMEAKSQANSQKDEIFALINK--------EANRDARAIAYAQNLKGIKRELSDKLENIN 695
Query: 63 ELLQKISQAFDDKRDCCLGHEIPNIETQQAM----RDVG-NKETDLIVEDFSSYSNERK 116
+ L+ S++FD+ ++ ET +A+ +D+G N E VE+ ++ NE K
Sbjct: 696 KDLKDFSKSFDEFKNGKNKDFSKAEETLKALKGSVKDLGINPEWISKVENLNAALNEFK 754
>ref|NP_223788.1| putative [Helicobacter pylori J99]
Length = 433
Score = 23.5 bits (49), Expect = 1.9
Identities = 17/93 (18%), Positives = 41/93 (43%), Gaps = 6/93 (6%)
Query: 22 IHQLERKIKKMQNDRISFKEKMAKELEKRDQNFKDKIDALNELLQKISQAFDDKRDCCLG 81
+HQ E +I++++ + + ++ E EK+ +K++ E KI +A +K +
Sbjct: 131 LHQKEAEIERLKRENNEAESRLKAENEKK---LNEKLELERE---KIEKALHEKNELKFK 184
Query: 82 HEIPNIETQQAMRDVGNKETDLIVEDFSSYSNE 114
+ +E + ++ +L + F E
Sbjct: 185 QQEEQLEMLRNELKNAQRKAELSSQQFQGEVQE 217
>ref|NP_222732.1| DNA PRIMASE [Helicobacter pylori J99]
Length = 559
Score = 23.5 bits (49), Expect = 1.9
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 13 YSKKQLFNLIHQLERKIKKMQNDRISFKEKM 43
+ K+ ++ ER++K++ +SF EKM
Sbjct: 508 FEKELRLLILRYFERQLKEIPKSPLSFSEKM 538
>ref|NP_224081.1| DNA POLYMERASE I [Helicobacter pylori J99]
Length = 897
Score = 23.1 bits (48), Expect = 2.5
Identities = 15/66 (22%), Positives = 33/66 (49%), Gaps = 1/66 (1%)
Query: 8 KDYTKYSKKQLFNLIHQL-ERKIKKMQNDRISFKEKMAKELEKRDQNFKDKIDALNELLQ 66
K+ +K F L++ + +K+ + + +S + + KR + KD ++ + E +
Sbjct: 720 KEKRSIAKSINFGLVYGMGSKKLSETLSIPLSEAKSYIEAYFKRFPSIKDYLNGMREEIL 779
Query: 67 KISQAF 72
K S+AF
Sbjct: 780 KTSKAF 785
>ref|NP_223296.1| putative [Helicobacter pylori J99]
Length = 512
Score = 23.1 bits (48), Expect = 2.5
Identities = 11/37 (29%), Positives = 20/37 (53%)
Query: 17 QLFNLIHQLERKIKKMQNDRISFKEKMAKELEKRDQN 53
Q+FNL+ Q E+ + ++N F + A+ +E N
Sbjct: 334 QIFNLLKQDEKASRMLKNYATKFPDFYARIVELSQYN 370
>ref|NP_222816.1| methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
Length = 564
Score = 23.1 bits (48), Expect = 2.5
Identities = 23/117 (19%), Positives = 51/117 (42%), Gaps = 11/117 (9%)
Query: 11 TKYSKKQLFNLIHQLERK---IKKMQNDRISFKEKMAKELEKRDQNFKDKIDALNELLQK 67
T+ S K ++ ++ K I M N I + + K L + K+ DA+ +L +
Sbjct: 310 TQKSMKNSSTTLNSVKNKATDIASMMNASIEQSQGLRKRLIETQGLVKESKDAIGDLFSQ 369
Query: 68 ISQAFDDKRDCCLGHEIPNIETQQAMRDVGNKETDL-IVEDFSSYSNERKRALGVEA 123
I+++ + + + + +Q R+ + ++ L I+ D + +N +EA
Sbjct: 370 ITESAHTEEEL-------SSKVEQLSRNADDVKSILDIINDIADQTNLLALNAAIEA 419
>ref|NP_224149.1| putative [Helicobacter pylori J99]
Length = 293
Score = 22.7 bits (47), Expect = 3.3
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 33 QNDRISFKEKMAKELEKRDQNFKDKIDAL 61
+ND + E M K LEKR + +I+++
Sbjct: 262 KNDVCRYTEWMPKNLEKRKEELIKRIESV 290
>ref|NP_223610.1| putative [Helicobacter pylori J99]
Length = 267
Score = 22.7 bits (47), Expect = 3.3
Identities = 11/42 (26%), Positives = 23/42 (54%)
Query: 17 QLFNLIHQLERKIKKMQNDRISFKEKMAKELEKRDQNFKDKI 58
+L NL+ + IK+ Q KE++ ++ E + +F ++I
Sbjct: 141 ELENLVENEVKNIKETQQIIFKKKEELVEKTEPKIYSFYERI 182
>ref|NP_222912.1| putative [Helicobacter pylori J99]
Length = 916
Score = 22.7 bits (47), Expect = 3.3
Identities = 18/84 (21%), Positives = 36/84 (42%)
Query: 24 QLERKIKKMQNDRISFKEKMAKELEKRDQNFKDKIDALNELLQKISQAFDDKRDCCLGHE 83
+L + K+ +++ I F L+ + K+ I+ L EL DD R C +
Sbjct: 765 KLYLRYKEYKDNPIPFTFLPISGLKNDSNDMKETIEKLCELDNHPIVLTDDDRKCVFNQQ 824
Query: 84 IPNIETQQAMRDVGNKETDLIVED 107
+ ++A ++ + T L + D
Sbjct: 825 ATSERFKRANEEMHDPITILQLSD 848
>ref|NP_224146.1| L-ALANINE DEHYDROGENASE [Helicobacter pylori J99]
Length = 380
Score = 22.3 bits (46), Expect = 4.3
Identities = 11/30 (36%), Positives = 15/30 (49%)
Query: 1 MPNTTAKKDYTKYSKKQLFNLIHQLERKIK 30
MP AK T YS + L++ LE +K
Sbjct: 304 MPGIVAKTSSTAYSHASVPYLLYYLEHGLK 333
>ref|NP_223415.1| putative [Helicobacter pylori J99]
Length = 529
Score = 22.3 bits (46), Expect = 4.3
Identities = 18/87 (20%), Positives = 43/87 (48%), Gaps = 11/87 (12%)
Query: 8 KDYTKYSKKQLFNLIHQLERKIKKMQNDRISFKEKMA--KELEKRDQNFKDKIDALNELL 65
K++ + K+ L +LE++ + ++ +R +FK++ A KE + + AL+ +L
Sbjct: 101 KEFVRDEKRYLEKEKKELEKERQILEQERENFKKQRAICKEAQAK---------ALDAML 151
Query: 66 QKISQAFDDKRDCCLGHEIPNIETQQA 92
++ D+ + L +E Q++
Sbjct: 152 NYMAYTKDEIKSMILEQLEEELEAQKS 178
>ref|NP_223338.1| putative LIPOPOLYSACCHARIDE BIOSYNTHESIS PROTEIN [Helicobacter
pylori J99]
Length = 315
Score = 22.3 bits (46), Expect = 4.3
Identities = 13/49 (26%), Positives = 25/49 (50%), Gaps = 6/49 (12%)
Query: 8 KDYTKYSKKQLFNLIHQLERKIKKMQNDRISFKEKMAKELEKRDQNFKD 56
KD +K++F+L+ ++ D ++ KEK+ EL+K + D
Sbjct: 113 KDLEVKYQKRVFSLLPL------RLHCDTLALKEKIKSELDKNPEKVFD 155
>ref|NP_222759.1| phosphomannose isomerase/GDP-mannose pyrophosphorylase
[Helicobacter pylori J99]
Length = 470
Score = 22.3 bits (46), Expect = 4.3
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 101 TDLIVEDFSSYSNERKRALGV 121
+D +++DF +Y N K+A+ +
Sbjct: 110 SDHLIKDFQAYENAIKKAINL 130
>ref|NP_224014.1| putative TYPE III DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 620
Score = 21.9 bits (45), Expect = 5.6
Identities = 13/51 (25%), Positives = 25/51 (48%), Gaps = 3/51 (5%)
Query: 47 LEKRDQNFKDKIDAL---NELLQKISQAFDDKRDCCLGHEIPNIETQQAMR 94
++K+ N K + L N+L ++I + D+K D E N++ + R
Sbjct: 532 IKKQILNAKSASECLKIFNDLNKRILKRADNKMDAIHSEEFQNLDLNEQKR 582
>ref|NP_223959.1| putative [Helicobacter pylori J99]
Length = 376
Score = 21.9 bits (45), Expect = 5.6
Identities = 10/24 (41%), Positives = 14/24 (57%)
Query: 5 TAKKDYTKYSKKQLFNLIHQLERK 28
T K K SK L+ L+H LE++
Sbjct: 221 TQLKKELKTSKDTLYKLLHALEKQ 244
>ref|NP_223544.1| IS606 TRANSPOSASE [Helicobacter pylori J99]
Length = 442
Score = 21.9 bits (45), Expect = 5.6
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 107 DFSSYSNERKRALGVE 122
DF YS + K LG+E
Sbjct: 215 DFKRYSTDMKELLGIE 230
>ref|NP_223452.1| MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN C [Helicobacter pylori
J99]
Length = 158
Score = 21.6 bits (44), Expect = 7.3
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 86 NIETQQAMRDVGNKET 101
N E Q M D+G+KET
Sbjct: 7 NEENQPKMVDIGDKET 22
>ref|NP_223351.1| putative HYDANTOIN UTILIZATION [Helicobacter pylori J99]
Length = 712
Score = 21.6 bits (44), Expect = 7.3
Identities = 13/54 (24%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 60 ALNELLQKISQAFDDKRDCCLGHEIPNIETQQAMRDVGNKETDLIVEDFSSYSN 113
A+ ELL+ ++A CL N E+++ +RD+ KE + + ++ +++
Sbjct: 161 AVKELLEAGAKAIV----ICLLQSHKNAESERIVRDIALKEIEKLGKNIPVFAS 210
>ref|NP_223202.1| cag island protein [Helicobacter pylori J99]
Length = 114
Score = 21.6 bits (44), Expect = 7.3
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 25 LERKIKKMQNDRISFKEKMAKELEK 49
++R I K++ + + FK K L+K
Sbjct: 1 MKRPISKLKQNFLQFKHSFNKHLDK 25
>ref|NP_223140.1| OLIGOPEPTIDASE [Helicobacter pylori J99]
Length = 578
Score = 21.6 bits (44), Expect = 7.3
Identities = 11/36 (30%), Positives = 21/36 (57%), Gaps = 6/36 (16%)
Query: 14 SKKQLFNLIHQLERKIKKMQNDRISFKEKMAKELEK 49
S++++ L+H +RKI+K ++ +K LEK
Sbjct: 177 SEEEILALLHNPKRKIRKKS------QKAFSKSLEK 206
>ref|NP_222776.1| putative [Helicobacter pylori J99]
Length = 522
Score = 21.6 bits (44), Expect = 7.3
Identities = 12/34 (35%), Positives = 15/34 (43%)
Query: 12 KYSKKQLFNLIHQLERKIKKMQNDRISFKEKMAK 45
KY K Q + ER +KK + EK AK
Sbjct: 135 KYEKHQAEKIRESFERGLKKSLPRHVFDDEKTAK 168
>ref|NP_223782.1| ATP synthase B' [Helicobacter pylori J99]
Length = 144
Score = 21.2 bits (43), Expect = 9.5
Identities = 10/42 (23%), Positives = 22/42 (51%)
Query: 6 AKKDYTKYSKKQLFNLIHQLERKIKKMQNDRISFKEKMAKEL 47
A + Y K++ L + E K++QN++ KE++ ++
Sbjct: 86 ATESYDAVIKQKENELNQEFEAFAKQLQNEKQILKEQLQAQM 127
>ref|NP_223578.1| putative [Helicobacter pylori J99]
Length = 381
Score = 21.2 bits (43), Expect = 9.5
Identities = 15/35 (42%), Positives = 19/35 (53%), Gaps = 3/35 (8%)
Query: 37 ISFKEKMAKELEKRDQNFKD---KIDALNELLQKI 68
IS +K A LEK NF++ KI +LN KI
Sbjct: 90 ISLPKKYAPLLEKNTSNFQERNLKILSLNYHHNKI 124
>ref|NP_223463.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 183
Score = 21.2 bits (43), Expect = 9.5
Identities = 12/39 (30%), Positives = 18/39 (45%)
Query: 20 NLIHQLERKIKKMQNDRISFKEKMAKELEKRDQNFKDKI 58
NL+ Q R+ K EK+ E++ +D KD I
Sbjct: 96 NLVSQNGRRYLKASISLELSNEKLLNEVKVKDTAIKDTI 134
>ref|NP_223197.1| cag island protein [Helicobacter pylori J99]
Length = 252
Score = 21.2 bits (43), Expect = 9.5
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 13 YSKKQLFNLIHQLERKIKKMQNDRISFKEKMAKELEKRDQNFKDKIDA 60
YSK L +RK + MQ +SF+ + + + + F DK+ A
Sbjct: 108 YSKNSL------RDRKDQLMQYCDVSFQTQAMRMFNENIRQFVDKVRA 149
>ref|NP_223108.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 455
Score = 21.2 bits (43), Expect = 9.5
Identities = 10/24 (41%), Positives = 15/24 (61%)
Query: 45 KELEKRDQNFKDKIDALNELLQKI 68
KE EKR+ +++I +N L KI
Sbjct: 140 KEREKREVKQEEEIKDINAQLSKI 163
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.313 0.130 0.350
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 138,222
Number of Sequences: 1491
Number of extensions: 6327
Number of successful extensions: 52
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 49
length of query: 125
length of database: 494,079
effective HSP length: 68
effective length of query: 57
effective length of database: 392,691
effective search space: 22383387
effective search space used: 22383387
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 43 (21.2 bits)