BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645515|ref|NP_207690.1| hypothetical protein
[Helicobacter pylori 26695]
(208 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_224130.1| ATP-DEPENDENT DNA HELICASE [Helicobacter p... 34 0.003
ref|NP_223704.1| putative [Helicobacter pylori J99] 30 0.061
ref|NP_224128.1| TYPE III RESTRICTION ENZYME [Helicobacter ... 29 0.10
ref|NP_223847.1| abc transporter, ATP-binding protein [Heli... 29 0.10
ref|NP_223668.1| INTEGRASE/RECOMBINASE (XERCD FAMILY) [Heli... 28 0.18
ref|NP_223306.1| GLUTAMYL-TRNA SYNTHETASE [Helicobacter pyl... 28 0.23
ref|NP_223283.1| DNA MISMATCH REPAIR PROTEIN [Helicobacter ... 27 0.30
ref|NP_223665.1| putative [Helicobacter pylori J99] 27 0.40
ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helico... 26 0.68
ref|NP_223189.1| cag island protein [Helicobacter pylori J99] 26 0.88
ref|NP_223625.1| putative [Helicobacter pylori J99] 25 1.2
ref|NP_222882.1| putative PEPTIDYL-PROLYL CIS-TRANS ISOMERA... 25 1.2
ref|NP_223262.1| PENICILLIN-BINDING PROTEIN [Helicobacter p... 25 1.5
ref|NP_223241.1| SIGNAL PEPTIDASE I [Helicobacter pylori J99] 25 1.5
ref|NP_222754.1| putative [Helicobacter pylori J99] 25 1.5
ref|NP_224149.1| putative [Helicobacter pylori J99] 25 2.0
ref|NP_223620.1| putative [Helicobacter pylori J99] 24 2.6
ref|NP_223025.1| putative [Helicobacter pylori J99] 24 2.6
ref|NP_224015.1| putative TYPE III RESTRICTION ENZYME [Heli... 23 5.7
ref|NP_223735.1| putative [Helicobacter pylori J99] 23 7.5
ref|NP_223658.1| INTEGRASE/RECOMBINASE (XERCD FAMILY) [Heli... 23 7.5
ref|NP_223559.1| PHOSPHOTRANSACETYLASE [Helicobacter pylori... 23 7.5
ref|NP_223429.1| TYROSYL-TRNA SYNTHETASE [Helicobacter pylo... 23 7.5
ref|NP_223055.1| putative [Helicobacter pylori J99] 23 7.5
ref|NP_224152.1| DNA REPAIR PROTEIN(RECOMBINATION PROTEIN N... 22 9.8
ref|NP_224146.1| L-ALANINE DEHYDROGENASE [Helicobacter pylo... 22 9.8
ref|NP_223654.1| putative [Helicobacter pylori J99] 22 9.8
ref|NP_223423.1| MOLYBDOPTERIN COFACTOR BIOSYNTHETIC PROTEI... 22 9.8
ref|NP_223168.1| putative transporter [Helicobacter pylori ... 22 9.8
ref|NP_223086.1| 3-METHYL-2-OXOBUTANOATE HYDROXYMETHYLTRANS... 22 9.8
>ref|NP_224130.1| ATP-DEPENDENT DNA HELICASE [Helicobacter pylori J99]
Length = 623
Score = 33.9 bits (76), Expect = 0.003
Identities = 34/148 (22%), Positives = 59/148 (38%), Gaps = 23/148 (15%)
Query: 7 GALPLGDTPKTKESIIQKLFKKVKLKRYNFIMENGFDPIIYKRYLKKKETFLLFKKIAQA 66
G L +G K + + K+F K N + Y K E+ ++ K+ Q+
Sbjct: 43 GVLEVGILEKKNYAKVLKIFAYSKRFYKNLELVFFNHSAFYYNQFKTGESLFIYGKLEQS 102
Query: 67 S---------------------AFKNLKLQLKRREIINRYVSQALGDLKKGFRYAKVEHQ 105
S FK +K K +E + + +S L +LKK V
Sbjct: 103 SFNQAYIINTPKILTEFGKISLIFKKVKNHKKIQENLQKLLS--LENLKKEGVKENVARL 160
Query: 106 ILKIYFTHPSYLKAFKIEEAYYTNHLKA 133
+L+I+F P ++K F+ + + + HL A
Sbjct: 161 LLEIFFPTPHFVKDFETNKNFPSQHLNA 188
>ref|NP_223704.1| putative [Helicobacter pylori J99]
Length = 252
Score = 29.6 bits (65), Expect = 0.061
Identities = 15/32 (46%), Positives = 18/32 (55%)
Query: 151 FKTIQASVKKRAYQKPVVKKEKPPKSVNVNCE 182
FKT+ +KKR YQKPV E PK + E
Sbjct: 152 FKTLYPFLKKRIYQKPVRLWELEPKELKAFIE 183
>ref|NP_224128.1| TYPE III RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 969
Score = 28.9 bits (63), Expect = 0.10
Identities = 32/125 (25%), Positives = 50/125 (39%), Gaps = 14/125 (11%)
Query: 86 VSQALGDLKKGFRYAKVEHQILKIYFTHPSYLKAFKIEEAYYTNHLKAHLKETQKTLKAL 145
V Q GD + EH ++K F+ K+ +++ YY L ET + L
Sbjct: 541 VPQVEGDFVGAIQQEISEHSLIKQVFSAEELEKSGMVKKGYY-----GVLFETLEGL--- 592
Query: 146 DYPFDFKTIQASVKKRAYQKPVVKKEKPPKSVN----VNCEGLSDFTKKQFLKLKRACND 201
F KT + K Q +KKE + + ++ E L DF K + + R N
Sbjct: 593 --GFGEKTDDENFKLTLNQNEFLKKEPELEKLKDEKYLDFEKLKDFLKDRLIGHFRVRNK 650
Query: 202 NTLRT 206
N +T
Sbjct: 651 NERKT 655
>ref|NP_223847.1| abc transporter, ATP-binding protein [Helicobacter pylori J99]
Length = 578
Score = 28.9 bits (63), Expect = 0.10
Identities = 20/62 (32%), Positives = 31/62 (49%), Gaps = 4/62 (6%)
Query: 94 KKGFRYAKVEHQILKIYFTHPSYLKAFKIEEAYYTNHLKAHLKETQKTLKALDYPFDFKT 153
KKG AK + Q LK++ S K K+++ NH +AH + + KA D + T
Sbjct: 216 KKGEMAAKSKAQTLKVFSKFFSNFKITKLKD----NHEEAHKLFGENSRKAHDTEIIYST 271
Query: 154 IQ 155
+Q
Sbjct: 272 LQ 273
>ref|NP_223668.1| INTEGRASE/RECOMBINASE (XERCD FAMILY) [Helicobacter pylori J99]
Length = 357
Score = 28.1 bits (61), Expect = 0.18
Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 8/94 (8%)
Query: 52 KKKETFLLFKKIAQASAFKNLKLQLKRREIINRYVSQALGDLKKGFRYAKVEHQILKI-- 109
K+ + LL + F+ L L+LK + N + + RYA +E + L++
Sbjct: 182 KRNQCILLLIALGGLRKFEALDLELKNIALENNHYRLLIKGKNNKERYAYIEKEFLQVPL 241
Query: 110 --YFTHPSYLKAFKIEEAYYTNHLKAHLKETQKT 141
+ + LK+FK + KA TQKT
Sbjct: 242 NAWLSDTKRLKSFKGRFVF----KKAKNNTTQKT 271
>ref|NP_223306.1| GLUTAMYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 439
Score = 27.7 bits (60), Expect = 0.23
Identities = 20/85 (23%), Positives = 37/85 (43%)
Query: 96 GFRYAKVEHQILKIYFTHPSYLKAFKIEEAYYTNHLKAHLKETQKTLKALDYPFDFKTIQ 155
G + K+ +Q I + K K +A+Y L+ ++ K PF +
Sbjct: 62 GISWDKLVYQSHNIDYHREMAEKLLKENKAFYCYASAEFLEREKEKAKNEKRPFRYLDEW 121
Query: 156 ASVKKRAYQKPVVKKEKPPKSVNVN 180
A+++K PVV+ + P +V+ N
Sbjct: 122 ATLEKDKNHAPVVRLKAPNHAVSFN 146
>ref|NP_223283.1| DNA MISMATCH REPAIR PROTEIN [Helicobacter pylori J99]
Length = 762
Score = 27.3 bits (59), Expect = 0.30
Identities = 34/156 (21%), Positives = 65/156 (40%), Gaps = 15/156 (9%)
Query: 30 KLKRYNFIMENGFDPIIYKRYLKKKETFLL-FKKIAQASAFKNLKLQLKRREIINRYVSQ 88
+LK+ N +EN K K +LL +K + K L+L+ ++ +N S+
Sbjct: 529 ELKQKNEHLENAL-----KEQEDLKNAWLLEMEKQKEIFHHKKLELEKSYQQALNILKSE 583
Query: 89 ALGDLKKGFRYAKVEHQILKIYFTHPSYLKAFKIEEAYYTNHLKAHLKETQKTLKALDYP 148
K K H+ +I H + + +I ++ N + E+ ++ LD
Sbjct: 584 VAS--KDTSSMHKEIHKASEILNKHKTDQEIPQIITSFQINEKARYKNESVLVIQILDKG 641
Query: 149 FDFKTIQASVKKRAY-------QKPVVKKEKPPKSV 177
+ + ++ +A+ QKP K KPPK++
Sbjct: 642 YYLVETELGMRLKAHGSWLKQIQKPPKNKFKPPKTI 677
>ref|NP_223665.1| putative [Helicobacter pylori J99]
Length = 92
Score = 26.9 bits (58), Expect = 0.40
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 113 HPSYLKAFKIEEAYYTNHLKAHLKE 137
H YL K E YY NH++ LK+
Sbjct: 35 HDHYLSQVKEREEYYKNHIEEALKK 59
>ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helicobacter pylori J99]
Length = 949
Score = 26.2 bits (56), Expect = 0.68
Identities = 19/54 (35%), Positives = 26/54 (47%), Gaps = 5/54 (9%)
Query: 4 PKPGALPLGDTPKTKESIIQKLFKKVKLKRYNFIMENGFDPIIYKRYLKKKETF 57
PKP A TPK +E+ Q KK K K+ + PII K+ ++ TF
Sbjct: 84 PKPLAKKASKTPKKEETKAQPKPKKTKEKK-----KEAPAPIIKKKEIEIVNTF 132
>ref|NP_223189.1| cag island protein [Helicobacter pylori J99]
Length = 481
Score = 25.8 bits (55), Expect = 0.88
Identities = 18/48 (37%), Positives = 27/48 (55%), Gaps = 7/48 (14%)
Query: 136 KETQKT------LKALDYPFDFKTIQASVKKRAYQKP-VVKKEKPPKS 176
KE Q+T LK L+ K ++A +KK+ +KP VV+ PPK+
Sbjct: 310 KEKQETELAKYKLKDLENQKKLKALEAELKKKNTKKPRVVEVPIPPKT 357
Score = 24.6 bits (52), Expect = 2.0
Identities = 18/59 (30%), Positives = 26/59 (43%), Gaps = 6/59 (10%)
Query: 135 LKETQKTLKALDYPFDFKTIQASVKKRAYQKPVVKKEKPPKSVNVNCEGLSDFTKKQFL 193
+ E K +KA + K +KK A Q+ + K P+ V+V D TK Q L
Sbjct: 25 ISEADKVIKATKETKETKKEAKRLKKEAKQRQQIPDNKKPQYVSV------DDTKTQAL 77
>ref|NP_223625.1| putative [Helicobacter pylori J99]
Length = 362
Score = 25.4 bits (54), Expect = 1.2
Identities = 17/54 (31%), Positives = 21/54 (38%), Gaps = 12/54 (22%)
Query: 157 SVKKRAYQKPVVKKEKPPKSVN------------VNCEGLSDFTKKQFLKLKRA 198
S+ A + P + KP K V NC+ L DF KQ LK A
Sbjct: 26 SLNLNAEENPTKTEPKPAKGVKNKPKSPVTNVMMTNCDNLKDFNAKQKEVLKAA 79
>ref|NP_222882.1| putative PEPTIDYL-PROLYL CIS-TRANS ISOMERASE [Helicobacter pylori
J99]
Length = 299
Score = 25.4 bits (54), Expect = 1.2
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 121 KIEEAYYTNHLKAHLKETQKTLKALDYPFDFKTIQASVKKRAYQKPVVKKE-KPPKSVNV 179
K +EA ++ L E + + L+ +FK + +VKK+A + KK+ + K + +
Sbjct: 76 KEKEALIEQAIRTALVENEAKAEKLNQTPEFKAMMEAVKKQALVEFWAKKQAEEVKKIQI 135
Query: 180 NCEGLSDF 187
+ + DF
Sbjct: 136 PEKEMQDF 143
>ref|NP_223262.1| PENICILLIN-BINDING PROTEIN [Helicobacter pylori J99]
Length = 660
Score = 25.0 bits (53), Expect = 1.5
Identities = 15/70 (21%), Positives = 35/70 (49%), Gaps = 2/70 (2%)
Query: 19 ESIIQKLFKKVKLKRYNFIMENGFDPIIYKRYLKKKETFLLFKKIAQASAFKNLKLQLKR 78
+++++ + K K RY ++ L +++T L +K+ +A ++ L +
Sbjct: 99 DAVMRAMIKNAKSGRYTEGGSTLTQQLVKNMVLTREKT--LTRKLKEAIISIRIEKVLSK 156
Query: 79 REIINRYVSQ 88
EI+ RY++Q
Sbjct: 157 EEILERYLNQ 166
>ref|NP_223241.1| SIGNAL PEPTIDASE I [Helicobacter pylori J99]
Length = 290
Score = 25.0 bits (53), Expect = 1.5
Identities = 12/31 (38%), Positives = 18/31 (57%)
Query: 50 YLKKKETFLLFKKIAQASAFKNLKLQLKRRE 80
Y K ETF L +++A A N+ +QL + E
Sbjct: 168 YQKDNETFHLMEQLATQGAEANISMQLIQME 198
>ref|NP_222754.1| putative [Helicobacter pylori J99]
Length = 335
Score = 25.0 bits (53), Expect = 1.5
Identities = 13/29 (44%), Positives = 17/29 (57%)
Query: 149 FDFKTIQASVKKRAYQKPVVKKEKPPKSV 177
+DFK QA KK + QK V ++ PK V
Sbjct: 23 YDFKHCQAFFKKASLQKGGVALKELPKGV 51
>ref|NP_224149.1| putative [Helicobacter pylori J99]
Length = 293
Score = 24.6 bits (52), Expect = 2.0
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 150 DFKTIQASVKKRAYQKPVVKKEKPPKSVNVN 180
D +T++ + K YQ V +E+P K N N
Sbjct: 68 DIETLKELLVKFYYQNWVATREEPKKQTNCN 98
>ref|NP_223620.1| putative [Helicobacter pylori J99]
Length = 93
Score = 24.3 bits (51), Expect = 2.6
Identities = 17/57 (29%), Positives = 27/57 (46%), Gaps = 1/57 (1%)
Query: 35 NFIMENGFDPIIYKRYLKKKETFLLFKKIAQASAFKN-LKLQLKRREIINRYVSQAL 90
+++ E GFD Y K + LL + Q S K+ K +L E + ++QAL
Sbjct: 18 DYLFEKGFDDFFYVECYKYAASSLLLSQKEQVSGRKDYAKFKLFLSEEVALPLAQAL 74
>ref|NP_223025.1| putative [Helicobacter pylori J99]
Length = 501
Score = 24.3 bits (51), Expect = 2.6
Identities = 12/49 (24%), Positives = 26/49 (52%)
Query: 122 IEEAYYTNHLKAHLKETQKTLKALDYPFDFKTIQASVKKRAYQKPVVKK 170
++E ++ + + KETQ+T + + P D +T + + K + V +K
Sbjct: 282 VKEIQENSNDQENKKETQETQENTETPQDIETQELEIPKEEETQEVAEK 330
>ref|NP_224015.1| putative TYPE III RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 779
Score = 23.1 bits (48), Expect = 5.7
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 142 LKALDYP-FDFKTIQASVKKRAYQKPV 167
LKAL+ DFKT++ + KK A+ V
Sbjct: 526 LKALNLKNLDFKTLKKAFKKHAFNNKV 552
>ref|NP_223735.1| putative [Helicobacter pylori J99]
Length = 345
Score = 22.7 bits (47), Expect = 7.5
Identities = 11/38 (28%), Positives = 16/38 (41%)
Query: 110 YFTHPSYLKAFKIEEAYYTNHLKAHLKETQKTLKALDY 147
YFT ++ EE + N LK+ L+ DY
Sbjct: 207 YFTQGDKMRKVDFEELHLRNKLKSFNSNDAAYLQGTDY 244
>ref|NP_223658.1| INTEGRASE/RECOMBINASE (XERCD FAMILY) [Helicobacter pylori J99]
Length = 331
Score = 22.7 bits (47), Expect = 7.5
Identities = 11/24 (45%), Positives = 14/24 (57%)
Query: 25 LFKKVKLKRYNFIMENGFDPIIYK 48
LFKK K K N + F P+I+K
Sbjct: 235 LFKKDKQKSQNSLTLYNFIPLIFK 258
>ref|NP_223559.1| PHOSPHOTRANSACETYLASE [Helicobacter pylori J99]
Length = 519
Score = 22.7 bits (47), Expect = 7.5
Identities = 23/64 (35%), Positives = 31/64 (47%), Gaps = 10/64 (15%)
Query: 58 LLFKKIAQASAFKNLKLQLKRREIINRYVS-------QALGDLKKGFRYAKVEHQIL--- 107
LL K A S KNL L L+ EIIN S ++L +L+K ++ E + L
Sbjct: 239 LLGDKEAINSQAKNLNLNLENVEIINPNTSHYREEFAKSLYELRKSKGLSEQEAERLALD 298
Query: 108 KIYF 111
K YF
Sbjct: 299 KTYF 302
>ref|NP_223429.1| TYROSYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 402
Score = 22.7 bits (47), Expect = 7.5
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 22 IQKLFKKVKLKRYNFIMENGFDP 44
I+KL +K FI++ GFDP
Sbjct: 25 IEKLVRKYYETNERFIVKAGFDP 47
>ref|NP_223055.1| putative [Helicobacter pylori J99]
Length = 778
Score = 22.7 bits (47), Expect = 7.5
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 45 IIYKRYLKKKETFLLFKKIAQ 65
+IY RY+KK E + KI Q
Sbjct: 135 MIYDRYVKKLEELGFYDKIMQ 155
>ref|NP_224152.1| DNA REPAIR PROTEIN(RECOMBINATION PROTEIN N) [Helicobacter pylori
J99]
Length = 522
Score = 22.3 bits (46), Expect = 9.8
Identities = 13/62 (20%), Positives = 26/62 (40%)
Query: 32 KRYNFIMENGFDPIIYKRYLKKKETFLLFKKIAQASAFKNLKLQLKRREIINRYVSQALG 91
+ Y E+ +P++ K+K + L + + K L L +R +R+ L
Sbjct: 75 EEYGIFREDEHEPLVISVIKKEKTRYFLNQTSLSKNTLKALLKGLIKRLSNDRFSQNELN 134
Query: 92 DL 93
D+
Sbjct: 135 DI 136
>ref|NP_224146.1| L-ALANINE DEHYDROGENASE [Helicobacter pylori J99]
Length = 380
Score = 22.3 bits (46), Expect = 9.8
Identities = 11/41 (26%), Positives = 20/41 (47%)
Query: 131 LKAHLKETQKTLKALDYPFDFKTIQASVKKRAYQKPVVKKE 171
L+ HLK QK +D D ++++ ++ PV +E
Sbjct: 254 LRRHLKYMQKQGVVIDVACDLGGCIETIRQTSHSNPVYVEE 294
>ref|NP_223654.1| putative [Helicobacter pylori J99]
Length = 421
Score = 22.3 bits (46), Expect = 9.8
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 9 LPLGDTPKTKESIIQKLFKKVKLKRY 34
LPLG P+TK + L K + L Y
Sbjct: 202 LPLGLIPQTKGMLFSYLKKLISLTLY 227
>ref|NP_223423.1| MOLYBDOPTERIN COFACTOR BIOSYNTHETIC PROTEIN [Helicobacter pylori
J99]
Length = 321
Score = 22.3 bits (46), Expect = 9.8
Identities = 13/51 (25%), Positives = 24/51 (46%)
Query: 9 LPLGDTPKTKESIIQKLFKKVKLKRYNFIMENGFDPIIYKRYLKKKETFLL 59
LPL + + + I + KK+++ ++ G D I K + KE L+
Sbjct: 43 LPLDNVLEFLKIAIDEGVKKIRITGGEPLLRKGLDEFIAKLHAYNKEVALV 93
>ref|NP_223168.1| putative transporter [Helicobacter pylori J99]
Length = 442
Score = 22.3 bits (46), Expect = 9.8
Identities = 14/38 (36%), Positives = 19/38 (49%), Gaps = 2/38 (5%)
Query: 35 NFIMENG--FDPIIYKRYLKKKETFLLFKKIAQASAFK 70
+F+M G F + L KK +FL K A+AFK
Sbjct: 382 SFLMPLGGLFSVLFIGWILNKKRSFLATKHFFSANAFK 419
>ref|NP_223086.1| 3-METHYL-2-OXOBUTANOATE HYDROXYMETHYLTRANSFERASE [Helicobacter
pylori J99]
Length = 270
Score = 22.3 bits (46), Expect = 9.8
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 70 KNLKLQLKRREIINRYVSQALGDLKKG 96
K ++ LK +E+I + Q D+KKG
Sbjct: 234 KFVREYLKGKELIQNAIQQYADDVKKG 260
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.319 0.137 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 244,397
Number of Sequences: 1491
Number of extensions: 12003
Number of successful extensions: 68
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 40
Number of HSP's gapped (non-prelim): 32
length of query: 208
length of database: 494,079
effective HSP length: 74
effective length of query: 134
effective length of database: 383,745
effective search space: 51421830
effective search space used: 51421830
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)