BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645517|ref|NP_207692.1| hydrogenase
expression/formation protein (hypC) [Helicobacter pylori 26695]
(77 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223554.1| Hydrogenase expression/formation protein [... 142 1e-36
ref|NP_223303.1| putative 3-HYDROXYACID DEHYDROGENASE [Heli... 23 1.4
ref|NP_224015.1| putative TYPE III RESTRICTION ENZYME [Heli... 22 2.5
ref|NP_223486.1| INOSINE-5'-MONOPHOSPHATE DEHYDROGENASE [He... 22 2.5
ref|NP_223312.1| ASPARTATE AMMONIA-LYASE [Helicobacter pylo... 22 2.5
ref|NP_222962.1| putative [Helicobacter pylori J99] 22 2.5
ref|NP_223991.1| NICOTINATE-NUCLEOTIDE PYROPHOSPHORYLASE [H... 22 3.2
ref|NP_223779.1| ATP synthase F1, subunit alpha [Helicobact... 22 3.2
ref|NP_222958.1| putative Outer membrane protein [Helicobac... 22 3.2
ref|NP_223710.1| putative [Helicobacter pylori J99] 21 5.5
ref|NP_222903.1| UDP-3-O-[3-hydroxymyristoyl [Helicobacter ... 21 5.5
ref|NP_223871.1| DIHYDROPTEROATE SYNTHASE [Helicobacter pyl... 20 7.2
ref|NP_224114.1| putative component of cation transport for... 20 9.4
ref|NP_223744.1| GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE [Helic... 20 9.4
ref|NP_223579.1| stress protein [Helicobacter pylori J99] 20 9.4
>ref|NP_223554.1| Hydrogenase expression/formation protein [Helicobacter pylori
J99]
Length = 78
Score = 142 bits (358), Expect = 1e-36
Identities = 73/76 (96%), Positives = 74/76 (97%)
Query: 1 MCLAIPSKVIAIKDNVVLLETLGVQREASLDLMGESVKVGDYVLLHIGYVMSKIDEKEAL 60
MCLAIPSKVIAI DNV LLETLGVQREASLDLMGESVKVGDYVLLHIGYVMSKIDEKEAL
Sbjct: 1 MCLAIPSKVIAINDNVALLETLGVQREASLDLMGESVKVGDYVLLHIGYVMSKIDEKEAL 60
Query: 61 ESIELYQEMIARMNET 76
ESIELYQEMIA+MNET
Sbjct: 61 ESIELYQEMIAKMNET 76
>ref|NP_223303.1| putative 3-HYDROXYACID DEHYDROGENASE [Helicobacter pylori J99]
Length = 285
Score = 22.7 bits (47), Expect = 1.4
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 10 IAIKDNVVLLETLGVQREASLDLMGES 36
+A + ++L + LGV E+ L ++G+S
Sbjct: 179 VAYSEALLLAKRLGVDAESFLQIIGQS 205
>ref|NP_224015.1| putative TYPE III RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 779
Score = 21.9 bits (45), Expect = 2.5
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 13 KDNVVLLETLGVQREASLDLMGESVKVGDYVL 44
KDN++L + + +E S++ E++KV Y L
Sbjct: 156 KDNLLLEFSATIPKEKSVEDKYENLKVVTYTL 187
>ref|NP_223486.1| INOSINE-5'-MONOPHOSPHATE DEHYDROGENASE [Helicobacter pylori J99]
Length = 481
Score = 21.9 bits (45), Expect = 2.5
Identities = 11/30 (36%), Positives = 16/30 (52%)
Query: 38 KVGDYVLLHIGYVMSKIDEKEALESIELYQ 67
KV D + +G V S + + A +ELYQ
Sbjct: 421 KVSDMIFQLVGGVRSSMGYQGAKNILELYQ 450
>ref|NP_223312.1| ASPARTATE AMMONIA-LYASE [Helicobacter pylori J99]
Length = 468
Score = 21.9 bits (45), Expect = 2.5
Identities = 10/17 (58%), Positives = 12/17 (69%)
Query: 46 HIGYVMSKIDEKEALES 62
HIGY S + KEAL+S
Sbjct: 413 HIGYEKSAMIAKEALKS 429
>ref|NP_222962.1| putative [Helicobacter pylori J99]
Length = 222
Score = 21.9 bits (45), Expect = 2.5
Identities = 8/22 (36%), Positives = 16/22 (72%)
Query: 47 IGYVMSKIDEKEALESIELYQE 68
+G +++K+D K+A EL+Q+
Sbjct: 159 LGKILAKMDPKKAAALTELWQK 180
>ref|NP_223991.1| NICOTINATE-NUCLEOTIDE PYROPHOSPHORYLASE [Helicobacter pylori J99]
Length = 273
Score = 21.6 bits (44), Expect = 3.2
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 33 MGESVKVGDYVLLHIGYVMSKIDEKEALESIELY 66
+GE+ ++ Y H +V+ + +LESI Y
Sbjct: 213 VGETKEIAAYREAHYPFVLLEASGNISLESINAY 246
>ref|NP_223779.1| ATP synthase F1, subunit alpha [Helicobacter pylori J99]
Length = 503
Score = 21.6 bits (44), Expect = 3.2
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 5 IPSKVIAIKDNVVLLET 21
IP+ +I+I D + LET
Sbjct: 331 IPTNIISITDGQIFLET 347
>ref|NP_222958.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 479
Score = 21.6 bits (44), Expect = 3.2
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 12 IKDNVVLLETLGVQREASLDLMGESVK 38
I+D V L+T + LD++G K
Sbjct: 58 IRDGAVRLQTSAIPLSYYLDILGNKTK 84
>ref|NP_223710.1| putative [Helicobacter pylori J99]
Length = 243
Score = 20.8 bits (42), Expect = 5.5
Identities = 7/20 (35%), Positives = 15/20 (75%)
Query: 11 AIKDNVVLLETLGVQREASL 30
++K+N+ LLE++G + +L
Sbjct: 210 SLKENIALLESVGFKHVEAL 229
>ref|NP_222903.1| UDP-3-O-[3-hydroxymyristoyl [Helicobacter pylori J99]
Length = 336
Score = 20.8 bits (42), Expect = 5.5
Identities = 12/43 (27%), Positives = 25/43 (57%), Gaps = 2/43 (4%)
Query: 32 LMGESVKVGDYVLLHIGYVMSKIDEKEALESIELYQEMIARMN 74
++GE V++G+ L++ G V++ D + ++ LY +I N
Sbjct: 116 VIGEGVEIGENSLIYPGVVIA--DGVKIGKNCILYPRVILYQN 156
>ref|NP_223871.1| DIHYDROPTEROATE SYNTHASE [Helicobacter pylori J99]
Length = 380
Score = 20.4 bits (41), Expect = 7.2
Identities = 10/19 (52%), Positives = 13/19 (67%), Gaps = 2/19 (10%)
Query: 49 YVMSKIDEKEALESIELYQ 67
Y S+ D K+ALE E+YQ
Sbjct: 133 YEKSRFDSKKALE--EIYQ 149
>ref|NP_224114.1| putative component of cation transport for cbb3-type oxidase
[Helicobacter pylori J99]
Length = 788
Score = 20.0 bits (40), Expect = 9.4
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 20 ETLGVQREASLDLMGESVKVGDYVLLHIGYVMSK 53
ETL V L+ MG +KV + + +G+ +K
Sbjct: 575 ETLLVGSLKFLNAMGVDLKVKESANIMVGFAKNK 608
>ref|NP_223744.1| GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE [Helicobacter pylori J99]
Length = 425
Score = 20.0 bits (40), Expect = 9.4
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 40 GDYVLLHIGYVMSKIDEKEALESI 63
G+ L HI Y+ ++D + E +
Sbjct: 68 GEEFLTHISYLRVRLDNPKDFEEL 91
>ref|NP_223579.1| stress protein [Helicobacter pylori J99]
Length = 310
Score = 20.0 bits (40), Expect = 9.4
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 6 PSKVIAIKDNVVLLETLGVQREASL 30
PSKV++ K+N + L + EA L
Sbjct: 93 PSKVLSSKENQIHRLLLELLEEAKL 117
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.317 0.135 0.353
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,276
Number of Sequences: 1491
Number of extensions: 2261
Number of successful extensions: 15
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of query: 77
length of database: 494,079
effective HSP length: 53
effective length of query: 24
effective length of database: 415,056
effective search space: 9961344
effective search space used: 9961344
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.2 bits)
S2: 40 (20.0 bits)