BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645519|ref|NP_207694.1| hypothetical protein
[Helicobacter pylori 26695]
         (41 letters)

Database: NC_000921.faa
           1491 sequences; 494,079 total letters

Searching...done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_223556.1|  putative [Helicobacter pylori J99]               73  1e-15
ref|NP_223080.1|  putative [Helicobacter pylori J99]               25  0.25
ref|NP_223535.1|  putative [Helicobacter pylori J99]               22  2.8
ref|NP_223225.1|  putative [Helicobacter pylori J99]               20  8.1

>ref|NP_223556.1| putative [Helicobacter pylori J99]
          Length = 42

 Score = 72.8 bits (177), Expect = 1e-15
 Identities = 35/39 (89%), Positives = 38/39 (96%)

Query: 1  MMKAVFINVWYLLLTIILLIIIWRIIRLVLKNKDDSNDK 39
          MMKAVFINVWYLLLTIILLIIIWRII+LVLK+K+DS DK
Sbjct: 1  MMKAVFINVWYLLLTIILLIIIWRIIKLVLKDKNDSGDK 39



>ref|NP_223080.1| putative [Helicobacter pylori J99]
          Length = 97

 Score = 25.4 bits (54), Expect = 0.25
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 12 LLLTIILLIIIWRIIRLVLKNKDDSND 38
          L + I LLII+W + RL L+ K   +D
Sbjct: 19 LRILIPLLIIVWVLWRLFLRQKPHKDD 45



 Score = 21.9 bits (45), Expect = 2.8
 Identities = 8/27 (29%), Positives = 16/27 (58%)

Query: 12 LLLTIILLIIIWRIIRLVLKNKDDSND 38
          L+  +I++ ++WR+      +KDD  D
Sbjct: 22 LIPLLIIVWVLWRLFLRQKPHKDDHRD 48



>ref|NP_223535.1| putative [Helicobacter pylori J99]
          Length = 460

 Score = 21.9 bits (45), Expect = 2.8
 Identities = 9/13 (69%), Positives = 9/13 (69%)

Query: 5   VFINVWYLLLTII 17
           V IN WYLLL  I
Sbjct: 96  VAINFWYLLLVFI 108



>ref|NP_223225.1| putative [Helicobacter pylori J99]
          Length = 26

 Score = 20.4 bits (41), Expect = 8.1
 Identities = 6/20 (30%), Positives = 16/20 (80%)

Query: 7  INVWYLLLTIILLIIIWRII 26
          + + YL+L +I++ +++RI+
Sbjct: 1  MGIIYLILFLIVIYLLYRIL 20



  Database: NC_000921.faa
    Posted date:  Dec 10, 2001  4:36 PM
  Number of letters in database: 494,079
  Number of sequences in database:  1491
  
Lambda     K      H
   0.335    0.150    0.462 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,483
Number of Sequences: 1491
Number of extensions: 830
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 5
length of query: 41
length of database: 494,079
effective HSP length: 17
effective length of query: 24
effective length of database: 468,732
effective search space: 11249568
effective search space used: 11249568
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 41 (20.4 bits)