BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645520|ref|NP_207695.1| hypothetical protein
[Helicobacter pylori 26695]
(99 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223557.1| putative [Helicobacter pylori J99] 179 2e-47
ref|NP_223405.1| putative [Helicobacter pylori J99] 23 1.2
ref|NP_223893.1| putative [Helicobacter pylori J99] 23 1.6
ref|NP_223703.1| putative [Helicobacter pylori J99] 23 2.0
ref|NP_223402.1| putative [Helicobacter pylori J99] 23 2.0
ref|NP_223276.1| DNA LIGASE [Helicobacter pylori J99] 23 2.0
ref|NP_222792.1| phosphoglucosamine mutase [Helicobacter py... 23 2.0
ref|NP_223373.1| DNA POLYMERASE III SUBUNITS GAMMA AND TAU ... 22 4.5
ref|NP_222862.1| RECA PROTEIN. [Helicobacter pylori J99] 22 4.5
ref|NP_223266.1| FLAGELLIN A [Helicobacter pylori J99] 21 5.9
ref|NP_222801.1| putative [Helicobacter pylori J99] 21 5.9
ref|NP_223662.1| putative [Helicobacter pylori J99] 21 7.7
ref|NP_223007.1| DIPEPTIDE TRANSPORT SYSTEM ATP-BINDING PRO... 21 7.7
>ref|NP_223557.1| putative [Helicobacter pylori J99]
Length = 99
Score = 179 bits (453), Expect = 2e-47
Identities = 91/99 (91%), Positives = 95/99 (95%)
Query: 1 MEVVHFLEGVCFEKLHIEVLNENSSHKEIRICMPKGAVMDKHKAPGAISVQVLEGKIVFE 60
M +VHFLEGV FEKLHIE L+ENSS+KEIRICMPKGA+MDKHKAPGAISVQVLEGKIVFE
Sbjct: 1 MRMVHFLEGVHFEKLHIEALSENSSNKEIRICMPKGAIMDKHKAPGAISVQVLEGKIVFE 60
Query: 61 VGDEKIEMPKGALISLEAQVLHRLDALENSVIRLSLSKK 99
VGDEKIEMPKGALISLEAQV HRLDALENSVIRLSLSKK
Sbjct: 61 VGDEKIEMPKGALISLEAQVSHRLDALENSVIRLSLSKK 99
>ref|NP_223405.1| putative [Helicobacter pylori J99]
Length = 400
Score = 23.5 bits (49), Expect = 1.2
Identities = 14/32 (43%), Positives = 19/32 (58%), Gaps = 3/32 (9%)
Query: 43 KAPGAISVQVLEGKIVFEVGDEKIEMPKGALI 74
K P A+ VL+GKIVF ++I M K +I
Sbjct: 312 KTPNALVRNVLDGKIVFA---KEINMLKKVVI 340
>ref|NP_223893.1| putative [Helicobacter pylori J99]
Length = 245
Score = 23.1 bits (48), Expect = 1.6
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 5 HFLEGVCFEKLHIEVL 20
HF + + FEKL EVL
Sbjct: 222 HFFQNMAFEKLSYEVL 237
>ref|NP_223703.1| putative [Helicobacter pylori J99]
Length = 222
Score = 22.7 bits (47), Expect = 2.0
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 53 LEGKIVFEVGDEKIEMPKGALISLEAQVLHRLDALE 88
LE ++ + + KI AL+SL+ +LH LD+L+
Sbjct: 73 LEWHMIGSLQENKIN----ALLSLKPALLHSLDSLK 104
>ref|NP_223402.1| putative [Helicobacter pylori J99]
Length = 400
Score = 22.7 bits (47), Expect = 2.0
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 13 EKLHIEVLNENSSHKEIRICMPKG 36
EK H VL+E ++ +R+ P+G
Sbjct: 202 EKKHRRVLSEKFLNEALRVLKPRG 225
>ref|NP_223276.1| DNA LIGASE [Helicobacter pylori J99]
Length = 656
Score = 22.7 bits (47), Expect = 2.0
Identities = 12/39 (30%), Positives = 24/39 (60%)
Query: 47 AISVQVLEGKIVFEVGDEKIEMPKGALISLEAQVLHRLD 85
A+++Q L K++ ++ +EK+ L +L+ + L RLD
Sbjct: 437 ALNIQGLGDKVIEQLFEEKLIFNALDLYALKLEDLMRLD 475
>ref|NP_222792.1| phosphoglucosamine mutase [Helicobacter pylori J99]
Length = 445
Score = 22.7 bits (47), Expect = 2.0
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 48 ISVQVLEGKIVFEVGDEKIEMPKGALISLEAQVLHRLDALE 88
+S VLE K+V + E+ +L++L Q L++L+
Sbjct: 350 VSALVLESKLVSSIALNPFELYPQSLVNLNIQKKPPLESLK 390
>ref|NP_223373.1| DNA POLYMERASE III SUBUNITS GAMMA AND TAU [Helicobacter pylori J99]
Length = 582
Score = 21.6 bits (44), Expect = 4.5
Identities = 11/36 (30%), Positives = 21/36 (57%), Gaps = 1/36 (2%)
Query: 49 SVQVLEGKIVFEVGDEKIEMPKGALISLEAQVLHRL 84
S + +EG+ E E+IE P+ ++S + ++ H L
Sbjct: 369 STERIEGREKLEKR-ERIETPQTPMLSAKDRIFHNL 403
>ref|NP_222862.1| RECA PROTEIN. [Helicobacter pylori J99]
Length = 347
Score = 21.6 bits (44), Expect = 4.5
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 70 KGALISLEAQVLHRLDALENSVIRLSLS 97
KGAL+ L + + ++DA+ + L L+
Sbjct: 24 KGALVRLGDKQVEKIDAISTGSLGLDLA 51
>ref|NP_223266.1| FLAGELLIN A [Helicobacter pylori J99]
Length = 510
Score = 21.2 bits (43), Expect = 5.9
Identities = 14/58 (24%), Positives = 25/58 (42%)
Query: 18 EVLNENSSHKEIRICMPKGAVMDKHKAPGAISVQVLEGKIVFEVGDEKIEMPKGALIS 75
EV+N+NS+ ++ D G++S L G + + D K G L++
Sbjct: 219 EVINKNSNRTGVKAYASVITTSDVAVQSGSLSNLTLNGIHLGNIADIKKNDSDGRLVA 276
>ref|NP_222801.1| putative [Helicobacter pylori J99]
Length = 450
Score = 21.2 bits (43), Expect = 5.9
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 12 FEKLHIEVLNENSSHKEI---RICMPKGAVMDKHKAPGAIS 49
F ++ +VL+ E+ +IC KG + +PGA S
Sbjct: 374 FGEVRPQVLDRTKRKLELGEKKICTHKGITFNMTPSPGATS 414
>ref|NP_223662.1| putative [Helicobacter pylori J99]
Length = 668
Score = 20.8 bits (42), Expect = 7.7
Identities = 12/42 (28%), Positives = 21/42 (49%)
Query: 39 MDKHKAPGAISVQVLEGKIVFEVGDEKIEMPKGALISLEAQV 80
+D + GAI +V+ GK VF+V A S++ ++
Sbjct: 51 IDANLLNGAIESRVVLGKRVFKVEAHGFYFRNNATNSIDIEI 92
>ref|NP_223007.1| DIPEPTIDE TRANSPORT SYSTEM ATP-BINDING PROTEIN [Helicobacter
pylori J99]
Length = 268
Score = 20.8 bits (42), Expect = 7.7
Identities = 9/19 (47%), Positives = 12/19 (62%)
Query: 3 VVHFLEGVCFEKLHIEVLN 21
V+H L G+ FE EVL+
Sbjct: 25 VIHALNGISFEVEQNEVLS 43
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.319 0.137 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,685
Number of Sequences: 1491
Number of extensions: 3414
Number of successful extensions: 17
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 13
length of query: 99
length of database: 494,079
effective HSP length: 64
effective length of query: 35
effective length of database: 398,655
effective search space: 13952925
effective search space used: 13952925
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 42 (20.8 bits)