BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645521|ref|NP_207697.1| phosphotransacetylase (pta)
[Helicobacter pylori 26695]
(223 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223559.1| PHOSPHOTRANSACETYLASE [Helicobacter pylori... 377 e-106
ref|NP_224102.1| putative PHOSPHATE PERMEASE [Helicobacter ... 28 0.15
ref|NP_224081.1| DNA POLYMERASE I [Helicobacter pylori J99] 27 0.34
ref|NP_223453.1| MOLYBDOPTERIN BIOSYNTHESIS PROTEIN [Helico... 26 0.98
ref|NP_223252.1| putative [Helicobacter pylori J99] 26 0.98
ref|NP_223194.1| cag island protein [Helicobacter pylori J99] 25 1.3
ref|NP_223418.1| FUNCTIONAL HOMOLOG OF SRP RECEPTOR [Helico... 25 1.7
ref|NP_223868.1| ASPARTOKINASE 2 ALPHA AND BETA SUBUNITS [H... 25 2.2
ref|NP_223538.1| putative lipopolysaccharide biosynthesis p... 24 2.9
ref|NP_223593.1| putative AMINO ACID ABC TRANSPORTER, BINDI... 24 3.7
ref|NP_222955.1| putative [Helicobacter pylori J99] 24 3.7
ref|NP_224142.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUB... 23 4.9
ref|NP_224138.1| glutamine fructose-6-phosphate aminotransf... 23 4.9
ref|NP_223158.1| putative [Helicobacter pylori J99] 23 4.9
ref|NP_223106.1| putative proline peptidase [Helicobacter p... 23 4.9
ref|NP_224079.1| BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE... 23 6.4
ref|NP_223761.1| putative [Helicobacter pylori J99] 23 6.4
ref|NP_222868.1| putative lipopolysaccharide biosynthesis p... 23 6.4
ref|NP_222838.1| putative Outer membrane protein [Helicobac... 23 8.3
ref|NP_222792.1| phosphoglucosamine mutase [Helicobacter py... 23 8.3
>ref|NP_223559.1| PHOSPHOTRANSACETYLASE [Helicobacter pylori J99]
Length = 519
Score = 377 bits (967), Expect = e-106
Identities = 192/218 (88%), Positives = 199/218 (91%)
Query: 1 MQGLWIYPEDTEVLGVACKSLLKALTPRYQKVALFSPISGGCESLEECESLNPLEFHSAI 60
MQ LWIYPEDTEVLG ACKSLLKAL PRYQK+ALFSPISGGCE ECESL+ LE HSAI
Sbjct: 1 MQSLWIYPEDTEVLGAACKSLLKALKPRYQKIALFSPISGGCEGFGECESLSSLEVHSAI 60
Query: 61 SKQKALELASTAQEELLFETILKRYDELQSTHDFVINLGCAPKFFLNAPLDLNTILAKHL 120
KQKALEL STAQEELLFETILKRYDELQSTHDFVINLG APKFFLNA LDLNTILAKHL
Sbjct: 61 DKQKALELVSTAQEELLFETILKRYDELQSTHDFVINLGYAPKFFLNALLDLNTILAKHL 120
Query: 121 NASVVAVAQTSLEYLKAMHSHILKKEAPFAVGLFAGETLEKPHFLSMSLCKQQCELEADL 180
NA VVAVAQTSL++LKAMHSHILKKEAPFA+GLF GETLEKPHFLS SLCKQQCELEA
Sbjct: 121 NAPVVAVAQTSLDHLKAMHSHILKKEAPFAIGLFVGETLEKPHFLSASLCKQQCELEASA 180
Query: 181 IESVLQIKSEIITPLAFQRGLEKKAKKQIKKVVLPESE 218
IE++LQ KSEIITPLAFQR LEKKAKKQIKKVVLPESE
Sbjct: 181 IENLLQTKSEIITPLAFQRSLEKKAKKQIKKVVLPESE 218
>ref|NP_224102.1| putative PHOSPHATE PERMEASE [Helicobacter pylori J99]
Length = 533
Score = 28.5 bits (62), Expect = 0.15
Identities = 41/185 (22%), Positives = 71/185 (38%), Gaps = 11/185 (5%)
Query: 37 PISGGCESLEECES-----LNPLEFHSAISKQKALELASTAQEELLFETILKRYDELQST 91
P++ ++LE+ S LN + + + L + L +T+ EL
Sbjct: 316 PLAAISQTLEDASSPMGSTLNSVPLWIMVVGAAGIALGLSLYGPKLIKTVGSEITELDKM 375
Query: 92 HDFVINLGCAPKFFLNAPLDLNTILAKHLNASVVAVAQTSLEYLKAMHSHILKKEAPFAV 151
F I L L + L L + + H+ V E L+ + V
Sbjct: 376 QAFCIALSAVITVLLASQLGL-PVSSTHIVVGAVFGVGFLRERLREQSRRRFARIRDNIV 434
Query: 152 GLFAGETLEKPHFLSMSLCKQQCELEADLIESVLQIKSEIITPLAFQRGLEKKAKKQIKK 211
GE LE+ K + ++ ++ES+ + K+ T +A + L+KK KK +KK
Sbjct: 435 AAHFGEDLEEIEGFLERFDKANLKEKSLMLESLKKSKN---TAIALE--LKKKEKKSLKK 489
Query: 212 VVLPE 216
V E
Sbjct: 490 VYKEE 494
>ref|NP_224081.1| DNA POLYMERASE I [Helicobacter pylori J99]
Length = 897
Score = 27.3 bits (59), Expect = 0.34
Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
Query: 44 SLEECESLNPLEFHSAISKQKALELASTAQEELLFETILKRYDELQSTHDFVINLGCAPK 103
S + L L+ ++ L +EL+FE K ELQ ++N P
Sbjct: 819 SASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRILNDEVYP- 877
Query: 104 FFLNAPLDLNTILAKHLN 121
L PL+ + +AK N
Sbjct: 878 --LRVPLETSAFIAKRWN 893
>ref|NP_223453.1| MOLYBDOPTERIN BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 176
Score = 25.8 bits (55), Expect = 0.98
Identities = 24/86 (27%), Positives = 36/86 (40%), Gaps = 12/86 (13%)
Query: 51 LNPLEFHSAISKQKALELASTAQEELLFETILKRYDELQSTHDFVINL-GCAPKFFLNAP 109
LNPLEFH I + +L+ ++++K DE Q D V+ G P P
Sbjct: 37 LNPLEFHYEIVAD---------ERDLIEKSLIKMCDEYQC--DLVVTTGGTGPALRDITP 85
Query: 110 LDLNTILAKHLNASVVAVAQTSLEYL 135
+ K L + TSL+Y+
Sbjct: 86 EATKKVCQKMLPGFGELMRMTSLKYV 111
>ref|NP_223252.1| putative [Helicobacter pylori J99]
Length = 978
Score = 25.8 bits (55), Expect = 0.98
Identities = 22/86 (25%), Positives = 34/86 (38%), Gaps = 14/86 (16%)
Query: 110 LDLNTILAKHLNASVVAVAQTSLEYLKAMHSHILKKEAPFAVGLFAGETLEKPHFLSMSL 169
LDLN L S + L + + +L K + TL+KP
Sbjct: 889 LDLN------LEVSTIKALSNVLNKIPIVGYLVLGKGGKITTNVNVKGTLDKP------- 935
Query: 170 CKQQCELEADLIESVLQIKSEIITPL 195
K Q L +D+I++ +I I TP+
Sbjct: 936 -KTQVTLASDIIQAPFKILRRIFTPI 960
>ref|NP_223194.1| cag island protein [Helicobacter pylori J99]
Length = 1819
Score = 25.4 bits (54), Expect = 1.3
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 171 KQQC--ELEADLIESVLQIKSEIITPLAFQRGLEKKAKKQIKKVVLPESEKM 220
K++C +L DL + VL +S R +K KK+ +K++ PE+ K+
Sbjct: 1105 KKRCVKDLPKDLQKKVLAKESVKAYLDCVSRARNEKEKKECEKLLTPEARKL 1156
>ref|NP_223418.1| FUNCTIONAL HOMOLOG OF SRP RECEPTOR [Helicobacter pylori J99]
Length = 293
Score = 25.0 bits (53), Expect = 1.7
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 7/45 (15%)
Query: 175 ELEADLIESVLQIKSEIITP-------LAFQRGLEKKAKKQIKKV 212
+++ DLIES+L+ ++ITP L F RG K ++K +
Sbjct: 38 DIQYDLIESLLKHLGDLITPKQLEVALLRFVRGESYYDKTRLKTI 82
>ref|NP_223868.1| ASPARTOKINASE 2 ALPHA AND BETA SUBUNITS [Helicobacter pylori J99]
Length = 405
Score = 24.6 bits (52), Expect = 2.2
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 154 FAGETLEKPHFLSMSLCKQQCELEADLIESVLQIKSEIITPLAFQR 199
F GE +E P ++L K Q + + +E I +EI LA R
Sbjct: 245 FKGERMETPIVSGIALDKNQARVSMEGVEDRPGIAAEIFGALAEYR 290
>ref|NP_223538.1| putative lipopolysaccharide biosynthesis protein [Helicobacter
pylori J99]
Length = 373
Score = 24.3 bits (51), Expect = 2.9
Identities = 7/20 (35%), Positives = 15/20 (75%)
Query: 16 VACKSLLKALTPRYQKVALF 35
+ C+ LL ++ P+Y+K+ +F
Sbjct: 118 ILCRLLLASIFPQYEKIIMF 137
>ref|NP_223593.1| putative AMINO ACID ABC TRANSPORTER, BINDING PROTEIN PRECURSOR
[Helicobacter pylori J99]
Length = 257
Score = 23.9 bits (50), Expect = 3.7
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 62 KQKALELASTAQEELLFETILKRYDE 87
++KALEL + A L+ + +LKR E
Sbjct: 222 QEKALELINQAMRRLINKGVLKRLGE 247
>ref|NP_222955.1| putative [Helicobacter pylori J99]
Length = 179
Score = 23.9 bits (50), Expect = 3.7
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 184 VLQIKSEIITPLAFQRGLEKKAKKQIKKVVLPESEKMKGF 223
VL+ + AF+ ++K +K K+ +LPE K+ F
Sbjct: 120 VLKNPHNFVEERAFKWFVKKSYEKTFKEKILPEESKVFSF 159
>ref|NP_224142.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUBUNIT) [Helicobacter
pylori J99]
Length = 991
Score = 23.5 bits (49), Expect = 4.9
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 127 VAQTSLEYLKAMHSHILKKEAPFAVGLFAGETLEKPHFLSMSLCKQQCELEADLIESVLQ 186
+AQ + S + K E+ A + A T ++ S K +L + L + +LQ
Sbjct: 827 LAQMDINDFNKALSQVFKNESSMAESI-ANNTRKRIIEKEASDPKYYEKLSSLLNDLILQ 885
Query: 187 IKSEIITPLAFQRGLEKKAKKQIKK 211
+ + +T L + + ++ AKK I K
Sbjct: 886 FREKKLTYLEYLQQIQDLAKKVIDK 910
>ref|NP_224138.1| glutamine fructose-6-phosphate aminotransferase [Helicobacter
pylori J99]
Length = 597
Score = 23.5 bits (49), Expect = 4.9
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 15 GVACKSLLKALTPRYQKVALFSPISGGCESLEECESLNPLE 55
GV S L L P+ + + S G SLE + LN +E
Sbjct: 187 GVFFASSLSVLAPKVDQFVILEENSVGQISLENFKDLNNIE 227
>ref|NP_223158.1| putative [Helicobacter pylori J99]
Length = 912
Score = 23.5 bits (49), Expect = 4.9
Identities = 17/59 (28%), Positives = 31/59 (51%), Gaps = 2/59 (3%)
Query: 37 PISGGCESLEECESLNP--LEFHSAISKQKALELASTAQEELLFETILKRYDELQSTHD 93
P SG + +LNP +EF K+ A+E AS + ELL + + ++++++ D
Sbjct: 742 PTSGRDAVIFGKNNLNPEIVEFIHKNHKRMAIEKASNKEIELLQDANFRHPEDVRASLD 800
>ref|NP_223106.1| putative proline peptidase [Helicobacter pylori J99]
Length = 357
Score = 23.5 bits (49), Expect = 4.9
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 110 LDLNTILAKHLNASVVAVAQTSLEYLKAMHSHIL 143
L ILA + NAS ++ ++LKA HS +L
Sbjct: 181 LSFEPILALNANASKPHALPSAKDFLKADHSILL 214
>ref|NP_224079.1| BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE [Helicobacter pylori
J99]
Length = 340
Score = 23.1 bits (48), Expect = 6.4
Identities = 13/37 (35%), Positives = 15/37 (40%)
Query: 15 GVACKSLLKALTPRYQKVALFSPISGGCESLEECESL 51
G AC LKA + K LF P+ CE L
Sbjct: 55 GQACFEGLKAYRSQKGKALLFRPLENAKRLQTSCERL 91
>ref|NP_223761.1| putative [Helicobacter pylori J99]
Length = 1154
Score = 23.1 bits (48), Expect = 6.4
Identities = 18/66 (27%), Positives = 33/66 (49%), Gaps = 4/66 (6%)
Query: 37 PISGGCESLEECESLNP--LEFHSAISKQKALELASTAQEELLFETILKRYDELQST--H 92
P SG +LNP +EF +K+ +E AS + ELL + K + ++++ H
Sbjct: 95 PTSGRDAITFGTNNLNPEMVEFLHKNNKKMIIEKASNKELELLKDANFKHPENIRASLDH 154
Query: 93 DFVINL 98
D + ++
Sbjct: 155 DAIAHI 160
>ref|NP_222868.1| putative lipopolysaccharide biosynthesis protein [Helicobacter
pylori J99]
Length = 377
Score = 23.1 bits (48), Expect = 6.4
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 16 VACKSLLKALTPRYQKVALF 35
V C+ L +L P+Y K+ +F
Sbjct: 123 VMCRLFLASLFPQYDKIIMF 142
>ref|NP_222838.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 286
Score = 22.7 bits (47), Expect = 8.3
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 14 LGVACKSLLKALTPRYQKVALFSPISGG 41
+ +A SLL A TP+ +K SP G
Sbjct: 10 ISLAMTSLLSAETPKQEKAIKTSPTKKG 37
>ref|NP_222792.1| phosphoglucosamine mutase [Helicobacter pylori J99]
Length = 445
Score = 22.7 bits (47), Expect = 8.3
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 41 GCESLEECESLNPLEFHSAISKQKA 65
GC E+C +L+P + + K +A
Sbjct: 211 GCNINEQCGALHPNQLSQEVKKYRA 235
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.318 0.134 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 220,620
Number of Sequences: 1491
Number of extensions: 9208
Number of successful extensions: 49
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 35
Number of HSP's gapped (non-prelim): 22
length of query: 223
length of database: 494,079
effective HSP length: 74
effective length of query: 149
effective length of database: 383,745
effective search space: 57178005
effective search space used: 57178005
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)