BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645522|ref|NP_207698.1| hypothetical protein
[Helicobacter pylori 26695]
(527 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223560.1| putative [Helicobacter pylori J99] 923 0.0
ref|NP_223025.1| putative [Helicobacter pylori J99] 54 1e-08
ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helico... 43 2e-05
ref|NP_223706.1| histidine kinase [Helicobacter pylori J99] 43 2e-05
ref|NP_223645.1| putative [Helicobacter pylori J99] 42 5e-05
ref|NP_223054.1| septum formation protein [Helicobacter pyl... 42 5e-05
ref|NP_222772.1| putative [Helicobacter pylori J99] 39 3e-04
ref|NP_223322.1| putative [Helicobacter pylori J99] 38 6e-04
ref|NP_223978.1| SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEI... 38 7e-04
ref|NP_223625.1| putative [Helicobacter pylori J99] 38 7e-04
ref|NP_223889.1| putative [Helicobacter pylori J99] 37 0.001
ref|NP_222877.1| putative [Helicobacter pylori J99] 36 0.003
ref|NP_223894.1| PROTEIN-EXPORT MEMBRANE PROTEIN [Helicobac... 35 0.004
ref|NP_223194.1| cag island protein [Helicobacter pylori J99] 35 0.006
ref|NP_223801.1| putative Outer membrane protein [Helicobac... 33 0.018
ref|NP_223147.1| putative Outer membrane protein [Helicobac... 33 0.023
ref|NP_223039.1| putative [Helicobacter pylori J99] 33 0.023
ref|NP_222894.1| putative [Helicobacter pylori J99] 33 0.023
ref|NP_223640.1| Component of conjugal plasmid transfer sys... 32 0.040
ref|NP_223427.1| putative PROBABLE N-ACETYLMURAMOYL-L-ALANI... 32 0.040
ref|NP_223830.1| putative [Helicobacter pylori J99] 32 0.052
ref|NP_223761.1| putative [Helicobacter pylori J99] 32 0.052
ref|NP_223247.1| putative SIDEROPHORE-MEDIATED IRON TRANSPO... 32 0.052
ref|NP_223575.1| putative Outer membrane protein [Helicobac... 31 0.068
ref|NP_223176.1| putative [Helicobacter pylori J99] 31 0.068
ref|NP_223207.1| cag island protein [Helicobacter pylori J99] 31 0.088
ref|NP_223770.1| putative [Helicobacter pylori J99] 30 0.12
ref|NP_222964.1| EXODEOXYRIBONUCLEASE LARGE SUBUNIT [Helico... 30 0.12
ref|NP_223195.1| cag island protein [Helicobacter pylori J99] 30 0.15
ref|NP_222962.1| putative [Helicobacter pylori J99] 30 0.15
ref|NP_223108.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [H... 30 0.20
ref|NP_223617.1| putative [Helicobacter pylori J99] 29 0.34
ref|NP_222829.1| DNA TOPOISOMERASE I [Helicobacter pylori J99] 29 0.34
ref|NP_222812.1| methyl-accepting chemotaxis protein (MCP) ... 29 0.34
ref|NP_223860.1| putative [Helicobacter pylori J99] 28 0.44
ref|NP_223661.1| putative [Helicobacter pylori J99] 28 0.44
ref|NP_223515.1| putative [Helicobacter pylori J99] 28 0.44
ref|NP_223642.1| putative [Helicobacter pylori J99] 28 0.75
ref|NP_223075.1| ATP-DEPENDENT ZINC METALLOPEPTIDASE [Helic... 28 0.75
ref|NP_223787.1| putative [Helicobacter pylori J99] 27 0.98
ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [He... 27 0.98
ref|NP_222767.1| putative TYPE II DNA MODIFICATION ENZYME (... 27 0.98
ref|NP_224124.1| L-SERYL-TRNA(SER) SELENIUM TRANSFERASE [He... 27 1.3
ref|NP_223380.1| putative Outer membrane protein [Helicobac... 27 1.3
ref|NP_222794.1| PEPTIDE CHAIN RELEASE FACTOR 1 [Helicobact... 27 1.3
ref|NP_224015.1| putative TYPE III RESTRICTION ENZYME [Heli... 27 1.7
ref|NP_223759.1| putative [Helicobacter pylori J99] 27 1.7
ref|NP_223532.1| putative [Helicobacter pylori J99] 27 1.7
ref|NP_223415.1| putative [Helicobacter pylori J99] 27 1.7
ref|NP_223219.1| putative [Helicobacter pylori J99] 27 1.7
ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATE... 27 1.7
ref|NP_223210.1| DNA transfer protein (Agrobacterium VirB4 ... 27 1.7
ref|NP_224184.1| FLAGELLAR BASAL-BODY ROD PROTEIN [Helicoba... 26 2.2
ref|NP_223663.1| putative [Helicobacter pylori J99] 26 2.2
ref|NP_222839.1| putative [Helicobacter pylori J99] 26 2.2
ref|NP_223905.1| NADH oxidoreductase I [Helicobacter pylori... 26 2.8
ref|NP_223574.1| putative vacuolating cytotoxin (VacA) para... 26 2.8
ref|NP_223001.1| putative FLAGELLAR-HOOK ASSOCIATED PROTEIN... 26 2.8
ref|NP_223630.1| septum formation protein [Helicobacter pyl... 25 3.7
ref|NP_223569.1| putative IRON-REGULATED OUTER MEMBRANE PRO... 25 3.7
ref|NP_223134.1| TYPE I RESTRICTION ENZYME (MODIFICATION SU... 25 3.7
ref|NP_222998.1| putative [Helicobacter pylori J99] 25 3.7
ref|NP_223624.1| GLYCYL-TRNA SYNTHETASE BETA CHAIN [Helicob... 25 4.9
ref|NP_222841.1| L-SERINE/L-THREONINEDEAMINASE [Helicobacte... 25 4.9
ref|NP_224073.1| putative motility protein [Helicobacter py... 25 6.3
ref|NP_224005.1| ROD SHAPE-DETERMINING PROTEIN [Helicobacte... 25 6.3
ref|NP_223659.1| putative [Helicobacter pylori J99] 25 6.3
ref|NP_223565.1| putative ATP-DEPENDENT HELICASE [Helicobac... 25 6.3
ref|NP_223498.1| putative [Helicobacter pylori J99] 25 6.3
ref|NP_223497.1| PANTOTHENATE METABOLISM FLAVOPROTEIN [Heli... 25 6.3
ref|NP_222835.1| TRANSLATION INITIATION FACTOR IF-3 [Helico... 25 6.3
ref|NP_224131.1| putative [Helicobacter pylori J99] 24 8.3
ref|NP_223797.1| VALYL-TRNA SYNTHETASE [Helicobacter pylori... 24 8.3
>ref|NP_223560.1| putative [Helicobacter pylori J99]
Length = 524
Score = 923 bits (2386), Expect = 0.0
Identities = 474/533 (88%), Positives = 488/533 (90%), Gaps = 15/533 (2%)
Query: 1 MPSPINPIHTNASANANALNSGAKNE--DAKNAPKSASKDFSKILNQKISKDKTAPKENP 58
MPSP+NPIHTNA NALNSGAKNE DAKNAPKSASKDFSKILNQKISKDKTAPKE+P
Sbjct: 1 MPSPVNPIHTNA----NALNSGAKNEVKDAKNAPKSASKDFSKILNQKISKDKTAPKESP 56
Query: 59 N--ALKTTPQNSKEGAKEDAKTLEKTPTLPHQHAQNPAKDQQAPTLKDWLNHKKT--TTP 114
N ALK TP++ AKEDAK LEKTPTLPHQHAQN AKDQQAPTLKDWLNH KT T P
Sbjct: 57 NHSALKATPKD----AKEDAKALEKTPTLPHQHAQNLAKDQQAPTLKDWLNHPKTHPTAP 112
Query: 115 HETQHETHEANETNPKTPNETLNKNEKKPNGVTSSVHQTNLTNKNPITPTNHANNAIKNP 174
HE QHETHEANETNPKTPNETL+KNEKKPN V S+ HQTNL NKNPITP NHANNAIKNP
Sbjct: 113 HEAQHETHEANETNPKTPNETLSKNEKKPNEVASNAHQTNLPNKNPITP-NHANNAIKNP 171
Query: 175 TAPTDTKKEPKTLKDIQTLSQKHDLNASNIQAATTPENKNPLNASDQLALKTTQTPTNHT 234
T PT K+PKTLKDIQTLSQKHDLNASNIQAATTPENKNPLNASD LALKTTQ NHT
Sbjct: 172 TTPTHNVKDPKTLKDIQTLSQKHDLNASNIQAATTPENKNPLNASDHLALKTTQASINHT 231
Query: 235 LAKNDAKNTANLSSVLQSLEKKEPQNKEHANPLNNEKKTPPLKEALEMNAIKRDKTLSKK 294
L KNDAKNTANLSSVLQSLEKKEPQNKEHANP NNEKKTPPLKEAL+MNAIKRDKTLSKK
Sbjct: 232 LTKNDAKNTANLSSVLQSLEKKEPQNKEHANPPNNEKKTPPLKEALQMNAIKRDKTLSKK 291
Query: 295 KSEKTPIHAKTQTTAPSATPENAPKIPLKTPPLMPLIGANPPPNDNIPTPLEKEEKAKEA 354
K EKTPIHAKTQT APSATPENAPKIPLKT PLMPLIGANPPPNDN PTPLEKEEK KE
Sbjct: 292 KPEKTPIHAKTQTIAPSATPENAPKIPLKTLPLMPLIGANPPPNDNAPTPLEKEEKTKEI 351
Query: 355 SDNKEKTKETSNSAQNAQNTQASDKTSDNKSTAPKETIKHFTQQLKQEIQEYKPPMSRIS 414
SDNKEK KET++SAQ+ QNTQASDKTSDNKST PKETI+HFTQQLKQEIQEYKPPMS+IS
Sbjct: 352 SDNKEKAKETNSSAQSVQNTQASDKTSDNKSTTPKETIRHFTQQLKQEIQEYKPPMSKIS 411
Query: 415 MDLFPKELGKVEVIIQKVGKNLKVSVISHNNSLQTFLDNQQDLKNSLNALGFEGVDLSFS 474
MDLFPKELGKVEV IQKVGKNLKVSVISHNNSLQTFLDNQQDLKNSLNALGFEGVDLSFS
Sbjct: 412 MDLFPKELGKVEVTIQKVGKNLKVSVISHNNSLQTFLDNQQDLKNSLNALGFEGVDLSFS 471
Query: 475 QDSSKEQQAPKDQPKEPFKEQELTPLKENALKSYQENTDNENQETSMQITLYA 527
QDSSKEQQAPKDQPKEPFKEQELTPLKENALKSYQENTD+ENQETSMQITLYA
Sbjct: 472 QDSSKEQQAPKDQPKEPFKEQELTPLKENALKSYQENTDHENQETSMQITLYA 524
>ref|NP_223025.1| putative [Helicobacter pylori J99]
Length = 501
Score = 53.9 bits (128), Expect = 1e-08
Identities = 84/368 (22%), Positives = 138/368 (36%), Gaps = 64/368 (17%)
Query: 152 QTNLTNKNPITPTNHANNA----------IKNPTAPTDTKKEPKTLKDIQTLSQKHDLNA 201
+T NKN + N A IK P PT+ K L +K NA
Sbjct: 68 ETISQNKNSVCMYKKGNEAQPFLEGFEMKIKKPFLPTEMLK---------VLQKKLGSNA 118
Query: 202 SNIQAATTPENKNPLNASDQLALKTTQTPTNHTLAKNDAKNTANLSSVLQSLEKKEPQNK 261
S ++ + + PT L N NL L++L K+EP N+
Sbjct: 119 SELEPSQNLD------------------PTQEILETN-WDELENLGD-LEALAKEEPNNE 158
Query: 262 EHANP-LNNEKKTPPLKEALEMNAIKRDKTLSKKKSEKTPIHAKTQTTAPSATPENAPKI 320
E P LN ++ P +EA E + K + ++ EK + Q A + E PK
Sbjct: 159 EQLLPTLNEQEGETPKEEAQEEVKKEEVKEMQEEVKEK-----QKQEVAENPQDEEKPKD 213
Query: 321 PLKTPPLMPLIGANPPPNDNIPTPLEKEEK---AKEASDNKEKTKETSNSAQNAQNTQAS 377
PP ++ + LE +E+ KE + +E KE + + + +
Sbjct: 214 DETQG------SVEPPKDEEVSKELETQEELETPKEETQEQEPIKEETQEIKEEKQEKTQ 267
Query: 378 DKTSDNKSTAPKETIKHF-----TQQLKQEIQE----YKPPMSRISMDL-FPKELGKVEV 427
D S + A +E +K Q+ K+E QE + P + +L PKE EV
Sbjct: 268 DSPSAQELEAMQELVKEIQENSNDQENKKETQETQENTETPQDIETQELEIPKEEETQEV 327
Query: 428 IIQKVGKNLKVSVISHNNSLQTFLDNQQDLKNSLNALGFEGVDLSFSQDSSKEQQAPKDQ 487
+ + L+ I+ + + Q + L A + + +D S ++ A Q
Sbjct: 328 AEKTQVQGLEKEEIAETPQEKEIQETQDETPQELEAQDEKLQENETPKDESMQESAQNLQ 387
Query: 488 PKEPFKEQ 495
KE +E+
Sbjct: 388 DKETPQEE 395
Score = 48.5 bits (114), Expect = 4e-07
Identities = 82/363 (22%), Positives = 144/363 (39%), Gaps = 40/363 (11%)
Query: 72 AKEDAKTLEKT-PTLPHQHAQNPAKDQQAPTLKDWLNHKKTTTPHETQHETHE--ANETN 128
AKE+ E+ PTL Q + P ++ Q K+ + + + + E E +E
Sbjct: 151 AKEEPNNEEQLLPTLNEQEGETPKEEAQEEVKKEEVKEMQEEVKEKQKQEVAENPQDEEK 210
Query: 129 PKTPNETLNKNEKKPNGVTSSVHQTNLTNKNPITPTNHANNAIKNPTAPTDTKKEPKTLK 188
PK +ET E + S +T + P T IK T +K+ KT
Sbjct: 211 PKD-DETQGSVEPPKDEEVSKELETQEELETPKEETQE-QEPIKEETQEIKEEKQEKTQD 268
Query: 189 D--IQTLSQKHDLNASNIQAATTPENKNPLNASDQLALKTTQTPTNHT-----LAKNDAK 241
Q L +L + + ENK + + T+TP + + K +
Sbjct: 269 SPSAQELEAMQELVKEIQENSNDQENKKETQETQE----NTETPQDIETQELEIPKEEET 324
Query: 242 NTANLSSVLQSLEKKE----PQNKEHANPLNNEKKTPPLKEA----LEMNAIKRDKTLSK 293
+ +Q LEK+E PQ KE + +TP EA L+ N +D+++ +
Sbjct: 325 QEVAEKTQVQGLEKEEIAETPQEKEIQE---TQDETPQELEAQDEKLQENETPKDESMQE 381
Query: 294 K----KSEKTPIHAKTQTTAPSATPENAPKIPLKTPPLMPLIG---ANPPPNDN-IPTPL 345
+ ++TP + S P + +P + A P N+N TP
Sbjct: 382 SAQNLQDKETPQEETQEDHYESIEDIPEPVMAKAMGEELPFLNEAVAKIPNNENDTETPK 441
Query: 346 EKEEKAKEASDNKEKTKETSNSAQNAQNTQASDKTSDNKSTAPKETIKHFTQQLKQEIQE 405
E + KA + KE++ +TS+ + N Q K+ + +S K +++ T +K +++
Sbjct: 442 ESDIKAPQ---EKEESDKTSSPLELRLNLQDLLKSLNQESL--KSLLENKTLSIKITLED 496
Query: 406 YKP 408
KP
Sbjct: 497 KKP 499
Score = 30.0 bits (66), Expect = 0.15
Identities = 55/289 (19%), Positives = 104/289 (35%), Gaps = 30/289 (10%)
Query: 26 EDAKNAPKSASKDFSKILNQKISKDKTAPKENPNALKTTPQNSKEGAKEDAKTLEKTPTL 85
+D KD + ++ PKE + + ++E +E + + +P+
Sbjct: 213 DDETQGSVEPPKDEEVSKELETQEELETPKEETQEQEPIKEETQEIKEEKQEKTQDSPSA 272
Query: 86 PHQHAQNPAKDQQAPTLKDWLNHKKTTTPHETQHETHEANETNPKTPNETLNKNEKKPNG 145
A + D N K+T ET E ET + L +++
Sbjct: 273 QELEAMQELVKEIQENSNDQENKKETQ-------ETQENTETPQDIETQELEIPKEEETQ 325
Query: 146 VTSSVHQTNLTNKNPI--TPTNHANNAIKNPTAPTDTKKEPKTLKDIQT-LSQKHDLNAS 202
+ Q K I TP ++ T P + + + + L++ +T + +A
Sbjct: 326 EVAEKTQVQGLEKEEIAETPQEKEIQETQDET-PQELEAQDEKLQENETPKDESMQESAQ 384
Query: 203 NIQAATTPENKNPLNASDQL----------ALKTTQTPTNHTLAKNDAKNTANLSSVLQS 252
N+Q TP+ + + + + A+ N +AK N N + +
Sbjct: 385 NLQDKETPQEETQEDHYESIEDIPEPVMAKAMGEELPFLNEAVAK--IPNNENDTETPKE 442
Query: 253 LEKKEPQNKEH----ANPLNNEKKTPPLKEALEMNAIK---RDKTLSKK 294
+ K PQ KE ++PL L ++L ++K +KTLS K
Sbjct: 443 SDIKAPQEKEESDKTSSPLELRLNLQDLLKSLNQESLKSLLENKTLSIK 491
Score = 26.6 bits (57), Expect = 1.7
Identities = 28/106 (26%), Positives = 47/106 (43%), Gaps = 7/106 (6%)
Query: 419 PKELGKVEVIIQKVGKNLKVSVISHNNSLQTFLDNQQDLKNSLNALGFEGVDLSFSQDSS 478
PKE + EV ++V K ++ V Q +N QD + + V+ ++ S
Sbjct: 173 PKEEAQEEVKKEEV-KEMQEEV--KEKQKQEVAENPQDEEKPKDDETQGSVEPPKDEEVS 229
Query: 479 KEQQAPKD--QPKEPFKEQELTPLKENALKSYQENTDNENQETSMQ 522
KE + ++ PKE +EQE P+KE + +E + S Q
Sbjct: 230 KELETQEELETPKEETQEQE--PIKEETQEIKEEKQEKTQDSPSAQ 273
>ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helicobacter pylori J99]
Length = 949
Score = 43.1 bits (100), Expect = 2e-05
Identities = 48/198 (24%), Positives = 76/198 (38%), Gaps = 36/198 (18%)
Query: 138 KNEKKPNGVTSSVHQTNLTNKNPI-TPTNHANNAIKNPTAP-TDTKKEPKTLKDIQTLSQ 195
K + + N T + Q N + N TP A A K P T + +PK K+ + +
Sbjct: 58 KEQIQANQPTKNPKQDNKDDLNTAATPKPLAKKASKTPKKEETKAQPKPKKTKEKKKEAP 117
Query: 196 KHDLNASNIQAATTPENKNPLNASDQLAL-----------------------KTTQTPTN 232
+ I+ T EN+ PL + A+ K TQ+ TN
Sbjct: 118 APIIKKKEIEIVNTFENQTPLVENTPKAVSHSQIEKAKQKLQEIQKSREALNKLTQSNTN 177
Query: 233 HTLAKNDAKNTANLSSVLQSLEKKEPQNKEHANPLNNEKKTPPLKEALEMNAIKR-DKTL 291
T N A N +N + ++K+E + K H N +K IKR D+T
Sbjct: 178 TTNNANSASNVSNAKKEISEVKKQEQEIKRHEN----------IKRRTGFRVIKRNDETE 227
Query: 292 SKKKSEKTPIHAKTQTTA 309
++ ++ T TQ+ A
Sbjct: 228 NETENSVTESKKPTQSAA 245
Score = 40.8 bits (94), Expect = 9e-05
Identities = 39/148 (26%), Positives = 60/148 (40%), Gaps = 13/148 (8%)
Query: 268 NNEKKTPPLKEALEMNAIKRDKTLSKK-----KSEKTPIHAKTQTTAPSATPENAPKIPL 322
N K P ++N K L+KK K E+T K + T AP I
Sbjct: 64 NQPTKNPKQDNKDDLNTAATPKPLAKKASKTPKKEETKAQPKPKKTKEKKKEAPAPIIKK 123
Query: 323 KTPPLMPLIGANPPPNDNIPTPLEKE--EKAKEASDNKEKTKETSNS-AQNAQNTQASDK 379
K ++ P +N P + EKAK+ +K++E N Q+ NT +
Sbjct: 124 KEIEIVNTFENQTPLVENTPKAVSHSQIEKAKQKLQEIQKSREALNKLTQSNTNTTNNAN 183
Query: 380 TSDNKSTAPKETIKHFTQQLKQEIQEYK 407
++ N S A KE ++K++ QE K
Sbjct: 184 SASNVSNAKKE-----ISEVKKQEQEIK 206
Score = 38.5 bits (88), Expect = 4e-04
Identities = 54/255 (21%), Positives = 103/255 (40%), Gaps = 30/255 (11%)
Query: 29 KNAPKSASKDFSKILNQ-KISKDKTAPKENPNALKTTPQNSKEGAKEDAKTLEKTPTLPH 87
K P+ A K + I++ K P +NP N+ K AK KTP
Sbjct: 40 KMTPEQAGKLYKYIVDGIKEQIQANQPTKNPKQDNKDDLNTAATPKPLAKKASKTPKKEE 99
Query: 88 QHAQ-------NPAKDQQAPTLKDWLNHKKTTTPHETQHETHEANETNPKTPNETLNKNE 140
AQ K+ AP +K K+ + +++T T + + K +
Sbjct: 100 TKAQPKPKKTKEKKKEAPAPIIKK----KEIEIVNTFENQTPLVENTPKAVSHSQIEKAK 155
Query: 141 KKPNGVTSSVHQTNLTNKNPITPTNHANNAIKNPTAPTDTKKEPKTLKDIQTLSQKHDLN 200
+K + S N ++ TN+AN+A + ++ KKE +K + ++H+
Sbjct: 156 QKLQEIQKSREALNKLTQSNTNTTNNANSA----SNVSNAKKEISEVKKQEQEIKRHE-- 209
Query: 201 ASNIQAATTPENKNPLNASDQLALKTTQTPTNHTLAKNDAKNTANLSSVLQSLEKKEPQN 260
NI+ T + +D+ T+ T +++ ++ K T + +++ + + KKE Q
Sbjct: 210 --NIKRRT---GFRVIKRNDE-----TENETENSVTES-KKPTQSAAAIFEDI-KKEWQE 257
Query: 261 KEHANPLNNEKKTPP 275
K+ +K + P
Sbjct: 258 KDKQETKKTKKPSKP 272
>ref|NP_223706.1| histidine kinase [Helicobacter pylori J99]
Length = 815
Score = 42.7 bits (99), Expect = 2e-05
Identities = 40/160 (25%), Positives = 68/160 (42%), Gaps = 9/160 (5%)
Query: 25 NEDAKNAPKSASKDFSKILNQKI--SKDKTAPKENPNALKTTPQNSKEGAKEDAKTLEKT 82
N +N + K I +Q + +K+ + KE P K + +KE AKE+ K KT
Sbjct: 112 NNGKENEIEEVVKKLQAITSQNLEGAKETSGTKEAPE--KEVKKENKEKAKEEVKA-NKT 168
Query: 83 PTLPHQHAQNPAKDQQAPTLKDWLNHKKTTTPHETQHETHEANETNPKTPNETLNKNEKK 142
PT + + NP D+ P L D+ N E + ++ E + + + +++ K
Sbjct: 169 PTTENLTSDNPLADE--PDL-DYANMSAEEVEAEIERLLNKRQEADKERRAQKKQEDQAK 225
Query: 143 PNGVTSSVHQTNLTNKNPITPTNHANNAIKNPTAPTDTKK 182
P + +T T + P T T A A DT++
Sbjct: 226 PKQEVAPAKETPKT-ETPKTETRKVPKAETKAKAKADTEE 264
Score = 29.3 bits (64), Expect = 0.26
Identities = 29/136 (21%), Positives = 57/136 (41%), Gaps = 29/136 (21%)
Query: 368 AQNAQNTQASDKTSDNKSTAPKETIKHFTQQLKQEIQEYKPPMSRISMDLFPKELGKVEV 427
A +QN + + +TS K KE K ++ K+E++ K P +
Sbjct: 128 AITSQNLEGAKETSGTKEAPEKEVKKENKEKAKEEVKANKTPTT---------------- 171
Query: 428 IIQKVGKNL-KVSVISHNNSLQTFLDNQQDLKNSLNALGFEGVDLSFSQDSSKEQQAPKD 486
+NL + ++ L + ++++ + L L+ Q++ KE++A K
Sbjct: 172 ------ENLTSDNPLADEPDLDYANMSAEEVEAEIERL------LNKRQEADKERRAQKK 219
Query: 487 QPKEPFKEQELTPLKE 502
Q + +QE+ P KE
Sbjct: 220 QEDQAKPKQEVAPAKE 235
Score = 25.4 bits (54), Expect = 3.7
Identities = 24/90 (26%), Positives = 36/90 (39%), Gaps = 4/90 (4%)
Query: 10 TNASANANALNSGAKNEDAKNAPKSASK---DFSKILNQKISKDKTAPKENPNALKTTPQ 66
T + N + N A D A SA + + ++LN++ DK + + P+
Sbjct: 168 TPTTENLTSDNPLADEPDLDYANMSAEEVEAEIERLLNKRQEADKERRAQKKQEDQAKPK 227
Query: 67 NSKEGAKEDAKT-LEKTPTLPHQHAQNPAK 95
AKE KT KT T A+ AK
Sbjct: 228 QEVAPAKETPKTETPKTETRKVPKAETKAK 257
Score = 25.0 bits (53), Expect = 4.9
Identities = 20/124 (16%), Positives = 52/124 (41%), Gaps = 12/124 (9%)
Query: 392 IKHFTQQLKQEIQEYKPPMSRISMDLFPKELGKVEVIIQKVGKNLKVSVISHNNSLQTFL 451
+ H T ++ + + +I+ D+ L ++++ K L V++ +
Sbjct: 61 LTHLTHNMEDVLNRARKGEIKITPDIMDVVLRSIDLM-----KTLLVTIRDTGSDTNNGK 115
Query: 452 DNQ-QDLKNSLNALGFEGVDLSFSQDSSKEQQAPKDQPKEPFKEQELTPLKENALKSYQE 510
+N+ +++ L A+ + ++ +KE K+ P++ K++ KE +
Sbjct: 116 ENEIEEVVKKLQAITSQNLE------GAKETSGTKEAPEKEVKKENKEKAKEEVKANKTP 169
Query: 511 NTDN 514
T+N
Sbjct: 170 TTEN 173
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 41.6 bits (96), Expect = 5e-05
Identities = 91/503 (18%), Positives = 189/503 (37%), Gaps = 59/503 (11%)
Query: 27 DAKNAPKSASKDFSKILNQKISKDKTAPKENPNALKTTPQNSKEGAKEDAKTLEKTPTLP 86
DA+ AS S++ N S++K +NP+ + PQ + + + + + +L
Sbjct: 64 DARANSNGASSPASRMENGARSEEKG---DNPSDERGIPQTPQSPSHQQNSSRDLGLSLS 120
Query: 87 HQHAQNPAK------DQQAPTLKDWLNHKKTTTPHETQHETHEANETNPKTPNETLNKNE 140
+ + Q +++ + +E + +ANE K+P + + N+
Sbjct: 121 REQPGQTGRLRLFDHGQMGSLFPTDHENQRKRSDNELDRRSDKANENGDKSPRQNGSANQ 180
Query: 141 KKPNGVTSSVHQTNLTNKNPITPT----NHANNAIKNPTAPTDTKKEPKTLKDIQTLSQK 196
+ + Q + +N++ + P +HA + +N + ++ ++ + LS
Sbjct: 181 ESARSERYGIAQGS-SNQSVLLPAQSRLHHAGLSAQNGLRDLEENRD----QEGRLLS-- 233
Query: 197 HDLNASNIQAATTPENKNPLNASDQLALKTTQTPTNHTLAKNDAKNTANLSSVLQSLEKK 256
N N+++ N + + + + N+ K+ S++ + K
Sbjct: 234 ---NLDNLESLLNAIRNNTIASEPDFRSRLLEAIQNNDPLKD---------SIVGAQLLK 281
Query: 257 EPQNKEHANPLNNEKKTPPLKEALEMNAIKRDKTLSKKKSEKTPIHAKTQTTAPSATPEN 316
+P K + + + E LE KKS +T T T + +
Sbjct: 282 DPTTKIFYDKFQLKISPKKVLEILENRL---------KKSIET-----TNETLNAFNVLD 327
Query: 317 APKIPLKTPPLMPLIGANPPP-----NDNIPTPLEKEEKAKEASDNKEKTKETSNSAQNA 371
+ I L + +G NP ++++ +E+ A+E + ++ T+E + Q
Sbjct: 328 SQAIDLNA--ISNSVGLNPTQESKITDNSVELNNAQEQTAQEQTTQEQTTQEQTTQEQTT 385
Query: 372 QNTQASDKTSDNKSTAPKETIKHFTQQLKQEIQEYKPPMSRISMDLFPKELGKVEVIIQK 431
Q ++T+ ++T ++T ++ +KQE +D P E EV+I+
Sbjct: 386 QEQTTQEQTTQEQTTQEQDTQENAPTTIKQETPITPAIPLNPKIDFKPSE----EVLIKG 441
Query: 432 VGKNLKVSVISHNNSLQTFLDNQQDLKNSLNA-LGFEGVDLSFSQDSSKEQQAPKDQPKE 490
K + I L+ Q+ LK A L + + FS E K Q E
Sbjct: 442 AKTRYKAN-IKAIELLKELQAKQEILKGDYYATLKEQEILAQFSGWGGLESYFKKAQHPE 500
Query: 491 PFKEQELTPLKENALKSYQENTD 513
FKE K+ ++Y D
Sbjct: 501 EFKELNALLTKDEFRRAYLSARD 523
Score = 32.7 bits (73), Expect = 0.023
Identities = 97/535 (18%), Positives = 181/535 (33%), Gaps = 65/535 (12%)
Query: 33 KSASKDFSKILNQKISKDKTAPKENPNALKTTPQNSKEGAKEDAKTLEKTPTL-PHQHAQ 91
K + K +IL ++ K E NA N + D + + L P Q ++
Sbjct: 295 KISPKKVLEILENRLKKSIETTNETLNAF-----NVLDSQAIDLNAISNSVGLNPTQESK 349
Query: 92 NPAKDQQAPTLKDWLNHKKTTTPHETQHETHEANETNPKTPNETLNKNEKKPNGVTSSVH 151
+ ++ ++TT TQ +T + T +T E + + T
Sbjct: 350 ITDNSVELNNAQEQTAQEQTTQEQTTQEQTTQEQTTQEQTTQEQTTQEQTTQEQDTQENA 409
Query: 152 QTNLTNKNPITPTNHANNAIK-NPT-------APTDTKKEPKTLKDIQTLSQKHDLNASN 203
T + + PITP N I P+ A T K K ++ ++ L K ++ +
Sbjct: 410 PTTIKQETPITPAIPLNPKIDFKPSEEVLIKGAKTRYKANIKAIELLKELQAKQEILKGD 469
Query: 204 IQAATTPEN------------------KNPLNASDQLALKTTQTPTNHTLAKNDAKNTAN 245
A + ++P + AL T L+ DA T
Sbjct: 470 YYATLKEQEILAQFSGWGGLESYFKKAQHPEEFKELNALLTKDEFRRAYLSARDAYYTPK 529
Query: 246 L--SSVLQSLEKKEPQNKEHANPLNNEKKTPPLKEALEMNAIKRDKTLSKKKSEKTPIHA 303
L S+ Q L++ N H E P L + DK +E PI A
Sbjct: 530 LVIDSIYQGLDQLGFNNDNHP----KEIFEPSLGTGKFIAHAPSDKNYRFIGTELDPISA 585
Query: 304 K-TQTTAPSATPENAPKIPLKTPPLMPLIGANPP-PNDNIPTPLEKE------------E 349
++ P+ +N + NPP N I + +KE +
Sbjct: 586 NLSKFLYPNQVIQNTALENYQFYQEYDAFVGNPPYGNHKIYSSNDKELSNESIHNYFLGK 645
Query: 350 KAKEASDNKEKTKETSNSAQNAQNTQASDKTSDNKS-----TAPKETIKHFTQQLKQEIQ 404
KE D+ S+ +A+N + + + N + P K ++ +I
Sbjct: 646 AIKELKDDGIGAFVVSSWFMDAKNPKMREHIAKNATFLGAIRLPNSVFKATGAEVTSDIV 705
Query: 405 EYKPPMSRISMDLFPKELGKVEVIIQKVGKNLKVSVISHNNSLQTFLDNQQDLKNSLNAL 464
+K + + + F K + + I+ + + ++ NN +F+ + Q L +
Sbjct: 706 FFKKGVEKATNQSFTKAMPYYDKILNSLDDDTLFAL--QNNRFDSFIPSDQ-----LKIV 758
Query: 465 GFEGVDLSFSQDSSKEQQAPKDQPKEPFKEQELTPLKENALKSYQENTDNENQET 519
F Q+ + D + Q+ +K+ + +N+ N N++T
Sbjct: 759 NAVANHFGFKQEKLQRWYEKIDTANFGYSTQDYKIIKD-FIDKVGKNSINLNEQT 812
Score = 27.7 bits (60), Expect = 0.75
Identities = 74/364 (20%), Positives = 140/364 (38%), Gaps = 45/364 (12%)
Query: 191 QTLSQKHDLNASNIQAATTPENKNPLNASDQLALKTTQTPTNHTLAKNDAKNTANLSSVL 250
+T SQK L A + A ENKNPL+ + +L + L K N
Sbjct: 1790 KTHSQKVSLEA--LDNAHETENKNPLDKAQELLESLSSYDEKGNLIAPSKKELEN----- 1842
Query: 251 QSLEKKEPQN----KEHANPLNNEKKTPPLKEALEMNAIKRDKTL---SKKKSEKTPIHA 303
L++KE ++ +E A + + + L+ ++M + + +K + +K +
Sbjct: 1843 -ELKEKEAKSVNLDEEIAKGCSFDVYSDVLRHLVQMGIPQNEIAFIHDAKTEEQKQDLFK 1901
Query: 304 KTQTTAPSATPENAPKIPLKTPPLMPLIGANPPPNDNIPTPLEKEEKAKEASDNKEKTKE 363
K + K+ + T L+ + P L + E N +
Sbjct: 1902 KLNRGGVRVLLGSPAKMGVGTNVQERLVAMHELDCPWRPDELLQMEGRGIRQGNILHQND 1961
Query: 364 TSNSAQNAQNTQASDKTSDNKSTAPKETIKHFTQQLKQ-------EIQEYKPPMSRISMD 416
N A++KT D++ ET +Q + E++++ S S +
Sbjct: 1962 PENFRMKIYR-YATEKTYDSRMWQIIETKSKGIEQFRNAHKLGLNELEDFNMGSSNAS-E 2019
Query: 417 LFPKELGKVEVIIQKVGKNLKVSVISHNNSLQTFLD----NQQDLKNSLNALGFEGVDLS 472
+ + G +II++V L+ + S + + F N++ LKN+ + L + +L
Sbjct: 2020 MKAEATGN-PLIIEEV--KLRAEIKSEESKYKAFNKEHYFNEESLKNNASKLDYLKQELK 2076
Query: 473 FSQDSSKEQQAP-------------KDQPKEPFKEQELTPLKENALKSYQENTDNENQET 519
+ + P + + E K +E+ PLKENA S +E T + +E
Sbjct: 2077 DLETLQRSVIIPTHTEIKLYDLKNEESKDYELIKVKEVEPLKENASMS-EELTHKKLKEQ 2135
Query: 520 SMQI 523
+ QI
Sbjct: 2136 NKQI 2139
>ref|NP_223054.1| septum formation protein [Helicobacter pylori J99]
Length = 844
Score = 41.6 bits (96), Expect = 5e-05
Identities = 54/209 (25%), Positives = 78/209 (36%), Gaps = 37/209 (17%)
Query: 93 PAKDQQAPTLKDWLNHKKTTTPHETQHET--HEANETNPKTPNETLNKNEKKPNGVTSSV 150
P+ Q+ T D P + H T E+ P N TLN +E + V S
Sbjct: 180 PSDSQKKETNNDKEKENLKENPIDENHNTPNEESFLAIPTPYNTTLNNSEPQEGLVQISP 239
Query: 151 HQ-TNLTNKNPITPTNHANNAIKNPTA-----------PTDTKKEPKTLKDIQTLSQKHD 198
H T+ T I P + + + NPT PT K+ P TLK I +S
Sbjct: 240 HPPTHYT----IYPKRNRFDDLTNPTLKEPKQETKEREPTLKKETPTTLKPIMPIS---- 291
Query: 199 LNASNIQAATTPENKNPLNASDQLALKTTQTPTNHTLAKNDAKNTANLSSVLQSLEKKEP 258
ASN + EN KT P + + ++ +++E+KE
Sbjct: 292 --ASNTENHDKTENH-----------KTPNHPIKEDDLQESPQENPQKENIEENIEEKET 338
Query: 259 QNKEHANP--LNNEKKTPPLKEALEMNAI 285
QN +P L + KK +KE E I
Sbjct: 339 QNAPSFSPLTLTSAKKPVMVKELSENKEI 367
Score = 35.4 bits (80), Expect = 0.004
Identities = 41/184 (22%), Positives = 69/184 (37%), Gaps = 7/184 (3%)
Query: 178 TDTKKEPKTLKDIQTLSQKHDLNASNIQAATTPENKNPLNASDQLALK--TTQTPTNHTL 235
T+ KE + LK+ + N + A TP N N+ Q L + PT++T+
Sbjct: 188 TNNDKEKENLKENPIDENHNTPNEESFLAIPTPYNTTLNNSEPQEGLVQISPHPPTHYTI 247
Query: 236 AKNDAKNTANLSSVLQSLEKKEPQNKEHANPLNNEKKTPPLKEALEMNAIKRDKTLSKKK 295
N L + KEP+ + +K+TP + + + + K +
Sbjct: 248 YPK-----RNRFDDLTNPTLKEPKQETKEREPTLKKETPTTLKPIMPISASNTENHDKTE 302
Query: 296 SEKTPIHAKTQTTAPSATPENAPKIPLKTPPLMPLIGANPPPNDNIPTPLEKEEKAKEAS 355
+ KTP H + + EN K ++ P + T +K KE S
Sbjct: 303 NHKTPNHPIKEDDLQESPQENPQKENIEENIEEKETQNAPSFSPLTLTSAKKPVMVKELS 362
Query: 356 DNKE 359
+NKE
Sbjct: 363 ENKE 366
>ref|NP_222772.1| putative [Helicobacter pylori J99]
Length = 220
Score = 38.9 bits (89), Expect = 3e-04
Identities = 44/195 (22%), Positives = 79/195 (39%), Gaps = 18/195 (9%)
Query: 126 ETNPKTPNETLNKNEK--KPNGVTSSVHQTNLTNKNPITPTNHANNAIKNPTAPTD--TK 181
+ NPK ++ N +EK KP T V + NK T KN TA + TK
Sbjct: 10 QENPKDALKSTNFHEKHTKPTETTELVEE----NKALTTEKERLERENKNLTADKENLTK 65
Query: 182 KEPKTLKDIQTLSQKHDLNASNIQAATTPENKNPLNASDQLALKTTQTPTNHTLAKNDAK 241
++ + K + L + N +A E +N + L + T+ + + + +
Sbjct: 66 EKTELQKQVNELKNSKQV-LENEKADWLREKENLTKDRENLTKEKTELTEKNKVLTTEKE 124
Query: 242 NTANLSSVLQSLEKKEPQNKEHANPLNNEKKTPPLKEALEMNAIKRDKTLSKKKSEKTPI 301
L++ ++L K++ ++++ N L N K+ LE +K K++KT +
Sbjct: 125 R---LATEKENLTKEKTESQKQVNELKNS------KQVLENEKADLTNENTKLKTDKTDL 175
Query: 302 HAKTQTTAPSATPEN 316
K Q T N
Sbjct: 176 TEKNQRLTTEKTELN 190
Score = 37.7 bits (86), Expect = 7e-04
Identities = 37/172 (21%), Positives = 68/172 (39%), Gaps = 3/172 (1%)
Query: 45 QKISKDKTAPKENPNALKTTPQNSKEGAKEDAKTLEKTPTLPHQHAQNPAKDQQAPTLK- 103
++ +K+ TA KEN KT Q K + LE + +N KD++ T +
Sbjct: 50 ERENKNLTADKENLTKEKTELQKQVNELKNSKQVLENEKADWLREKENLTKDRENLTKEK 109
Query: 104 -DWLNHKKTTTPHETQHETHEANETNPKTPNETLNKNEKKPNGVTSSVHQTNLTNKNPIT 162
+ K T + + T + N T KT ++ NE K + + +LTN+N
Sbjct: 110 TELTEKNKVLTTEKERLATEKENLTKEKTESQK-QVNELKNSKQVLENEKADLTNENTKL 168
Query: 163 PTNHANNAIKNPTAPTDTKKEPKTLKDIQTLSQKHDLNASNIQAATTPENKN 214
T+ + KN T+ + + + T ++ + N+ + N
Sbjct: 169 KTDKTDLTEKNQRLTTEKTELNNKITGLATEKERLAADKENLTKESRQRKPN 220
>ref|NP_223322.1| putative [Helicobacter pylori J99]
Length = 413
Score = 38.1 bits (87), Expect = 6e-04
Identities = 40/137 (29%), Positives = 54/137 (39%), Gaps = 26/137 (18%)
Query: 252 SLEKKEPQNKEHANPLNNEKKTPPLKEALEMNAIKRDKTLSKKKSEKTPIHAKTQTTAPS 311
SL+KK Q + N E K LK N ++ +T +K+K H + P
Sbjct: 37 SLDKKIRQELKSKELKNKELKNKDLK-----NKEEKKETKAKRKPRAEVHHGDAKNPTPK 91
Query: 312 ATPENAPKIPLKTPPLMPLIGANPPPNDNIPTPLEKEEKAKEASDNKEKTKETSNSAQ-- 369
TP PKI + + N +N P P EK+ + EK KETS S+Q
Sbjct: 92 ITP---PKIKGSSKGVQ-----NQGVQNNAPKPEEKDTTPQAT----EKNKETSPSSQFN 139
Query: 370 -------NAQNTQASDK 379
NA N DK
Sbjct: 140 SIFGNPNNATNNTLEDK 156
Score = 32.0 bits (71), Expect = 0.040
Identities = 37/180 (20%), Positives = 63/180 (34%), Gaps = 24/180 (13%)
Query: 43 LNQKISKDKTAPKENPNALKTTPQNSKEGAKEDAKTLEKTPTLPHQHAQNPAKDQQAPTL 102
L++KI ++ + + LK +KE KE + + H A+NP P +
Sbjct: 38 LDKKIRQELKSKELKNKELKNKDLKNKEEKKETKAKRKPRAEVHHGDAKNPTPKITPPKI 97
Query: 103 KDWLNHKKTTTPHETQHETHEANETNPKTPNETLNKNEKKPNGVTSSVHQTNLTNKNPIT 162
K + Q++ + N P+ + T EK NK +
Sbjct: 98 KG--------SSKGVQNQGVQNNAPKPEEKDTTPQATEK---------------NKE-TS 133
Query: 163 PTNHANNAIKNPTAPTDTKKEPKTLKDIQTLSQKHDLNASNIQAATTPENKNPLNASDQL 222
P++ N+ NP T+ E K + I L + IQ + A D+L
Sbjct: 134 PSSQFNSIFGNPNNATNNTLEDKVVGGISLLVNGSPITLYQIQEEQEKSKVSKAQARDRL 193
>ref|NP_223978.1| SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEIN [Helicobacter pylori
J99]
Length = 280
Score = 37.7 bits (86), Expect = 7e-04
Identities = 40/145 (27%), Positives = 57/145 (38%), Gaps = 21/145 (14%)
Query: 8 IHTNASANANALNSGAKNEDA---------KNAPKSASKDFSKILNQKISKDKTAPKENP 58
I+TN++ NA ++ K E K PK +K K K K PK P
Sbjct: 58 INTNSNTKTNAESAKPKEEPKEKPKKEEPKKEEPKKETKPKPK------PKPKPKPKPKP 111
Query: 59 NALKTTPQNSKEGAKEDAKTLEKTPTLPHQHAQNPAKDQQAP---TLKDWLNH--KKTTT 113
K P+ E E+ K E + A+ AK++ P T KD + K+ +
Sbjct: 112 KP-KPEPKPKPEPKVEEPKKEEPKEEPKKEEAKEEAKEKSVPKQVTTKDIVKEKDKQEES 170
Query: 114 PHETQHETHEANETNPKTPNETLNK 138
++ T EA NP NE L K
Sbjct: 171 NKTSEGATSEAQAYNPGVSNEFLMK 195
Score = 35.0 bits (79), Expect = 0.005
Identities = 32/130 (24%), Positives = 46/130 (34%), Gaps = 11/130 (8%)
Query: 283 NAIKRDKTLSKKKSEKTPIHAKTQTTAPSATPENAPKIPLKTPPLMPLIGANPPPNDNIP 342
+A +++ K K E+ + T P P+ PK P P P P P P
Sbjct: 70 SAKPKEEPKEKPKKEEPKKEEPKKETKPKPKPKPKPK-PKPKPKPKPEPKPKPEPKVEEP 128
Query: 343 TPLE-KEEKAKEASDNKEKTKETSNSAQNAQNTQASDKTSDNKSTAPKETIKHFTQQLKQ 401
E KEE KE + + K K + DK ++ T+ T
Sbjct: 129 KKEEPKEEPKKEEAKEEAKEKSVPKQVTTKDIVKEKDKQEESNKTSEGAT---------S 179
Query: 402 EIQEYKPPMS 411
E Q Y P +S
Sbjct: 180 EAQAYNPGVS 189
Score = 32.0 bits (71), Expect = 0.040
Identities = 26/131 (19%), Positives = 45/131 (33%), Gaps = 4/131 (3%)
Query: 44 NQKISKDKTAPKENPNALKTTPQNSKEGAKEDAKTLEKTPTLPHQHAQNPAKDQQAPTLK 103
N K + + PKE P + KE K++ K K P + K + P +
Sbjct: 63 NTKTNAESAKPKEEPKEKPKKEEPKKEEPKKETKPKPKPKPKPKPKPKPKPKPEPKPKPE 122
Query: 104 DWLNHKKTTTPHETQHETHEANETNPKT-PNETLNKNEKKPNGVTSSVHQTNLTNKNPIT 162
+ K P E + E K+ P + K+ K ++N T++ +
Sbjct: 123 PKVEEPKKEEPKEEPKKEEAKEEAKEKSVPKQVTTKDIVKEK---DKQEESNKTSEGATS 179
Query: 163 PTNHANNAIKN 173
N + N
Sbjct: 180 EAQAYNPGVSN 190
Score = 24.3 bits (51), Expect = 8.3
Identities = 12/43 (27%), Positives = 23/43 (52%), Gaps = 2/43 (4%)
Query: 464 LGFEGVDLSFSQDSSKEQQAPKDQPKEPFKEQELTPLKENALK 506
+ ++ + + ++ E PK++PKE K++E P KE K
Sbjct: 53 MSLASINTNSNTKTNAESAKPKEEPKEKPKKEE--PKKEEPKK 93
>ref|NP_223625.1| putative [Helicobacter pylori J99]
Length = 362
Score = 37.7 bits (86), Expect = 7e-04
Identities = 55/217 (25%), Positives = 85/217 (38%), Gaps = 40/217 (18%)
Query: 158 KNPITPTNHANNAIKNPTAPTDTKKEPKTLKD-IQTLSQKH--DLNASNIQAATTPENKN 214
K+ I N + KN A D +K + ++D I+ L + D +SN Q N N
Sbjct: 171 KDMIKSYNKGSRWEKNEKANADAEKYYEEIQDRIRRLKESKIFDSQSSNDQELQKSANSN 230
Query: 215 PLNASDQLALKTTQTPTNHTLAKNDAKNTANLSSVLQSLEKKEPQNKEHANPLNNEKKTP 274
L L TLA+ + + + +EK + + + +K+
Sbjct: 231 -------LDLDPIGNAMPQTLAQTETQKS--------QIEKSQIEEAQ-------TQKSQ 268
Query: 275 PLKEALEMNAIKRDKTLSKKKSEKTPIHAKTQTTAPSATPENAPKIPLKTPPLMPLIGAN 334
+KEA AIK K L K+K + P++ +A A + +PK P K P
Sbjct: 269 EMKEAASEQAIK--KPLEKEKDK--PMYLAQINSADFAPAKKSPKKPAKASP-------K 317
Query: 335 PPPNDNIPTPLEKEEKAKEASDNKEKTKETSNSAQNA 371
+NI + K AS NKE K S +NA
Sbjct: 318 RSSKNNISV----KSNTKTASKNKEVCKNCSPGQRNA 350
>ref|NP_223889.1| putative [Helicobacter pylori J99]
Length = 219
Score = 37.4 bits (85), Expect = 0.001
Identities = 40/176 (22%), Positives = 69/176 (38%), Gaps = 18/176 (10%)
Query: 270 EKKTPPLKEALEMNAIKRDKTLSKKKSEKTPIHAKTQTTAPSATPENAPKIPLKTPPLMP 329
+K + P+ +E + +R + K E A TTA P PL T
Sbjct: 38 KKDSAPMSPNVEKSETERQNSTFSPKEE-----ANATTTATEQNPTKDTVPPLDTATQKQ 92
Query: 330 LIGANPPPNDNIPTPLEKEEKAKEASDNKEKTKETSNSAQNAQNTQASDKTSDNKSTAPK 389
I I +++E K + + K++ K+ + Q +N + S ++
Sbjct: 93 EI------KQEIKQEIKQEIKQEIKQEIKQEIKQETKQEQEKENKPKQNSVSPVQNDQKT 146
Query: 390 ETIKHFTQQLKQEIQEYKPPMSRISMDLFPKELGKVEVIIQKVGKNLKVSVISHNN 445
T T + ++ EYK +S +++ FP GK II + KN V V+ N
Sbjct: 147 PT----TPLMGKKPLEYKVAVSGVNVRAFPSTKGK---IIGSLIKNKSVKVLEIQN 195
Score = 28.1 bits (61), Expect = 0.57
Identities = 26/111 (23%), Positives = 46/111 (41%), Gaps = 7/111 (6%)
Query: 171 IKNPTAPTDTKKEP-KTLKDIQTLSQKHDLNASNIQAATTPENKN--PLN-ASDQLALKT 226
+K +AP E +T + T S K + NA+ P PL+ A+ + +K
Sbjct: 37 VKKDSAPMSPNVEKSETERQNSTFSPKEEANATTTATEQNPTKDTVPPLDTATQKQEIKQ 96
Query: 227 TQTPTNHTLAKNDAKNTANLSSVLQSLEKKEPQNKEHAN---PLNNEKKTP 274
K + K ++ +++E +NK N P+ N++KTP
Sbjct: 97 EIKQEIKQEIKQEIKQEIKQEIKQETKQEQEKENKPKQNSVSPVQNDQKTP 147
Score = 24.6 bits (52), Expect = 6.3
Identities = 22/112 (19%), Positives = 42/112 (36%), Gaps = 10/112 (8%)
Query: 11 NASANANALNSGAKNEDAKNAPKSASKDFSKILNQKISKDKTAPKE--------NPNALK 62
+A + N S + +++ +PK + + Q +KD P + +
Sbjct: 41 SAPMSPNVEKSETERQNSTFSPKEEANATTTATEQNPTKDTVPPLDTATQKQEIKQEIKQ 100
Query: 63 TTPQNSKEGAKEDAKTLEKTPTLPHQHAQNPAKDQQAPTLKDWLNHKKTTTP 114
Q K+ K++ K K T Q +N K +++ + K TTP
Sbjct: 101 EIKQEIKQEIKQEIKQEIKQETKQEQEKENKPKQNSVSPVQN--DQKTPTTP 150
>ref|NP_222877.1| putative [Helicobacter pylori J99]
Length = 243
Score = 35.8 bits (81), Expect = 0.003
Identities = 35/147 (23%), Positives = 70/147 (46%), Gaps = 17/147 (11%)
Query: 345 LEKEEKAKEASDNKEK-TKETSNSAQNA----QNTQASDKTSDNKSTAPKETIKH-FTQQ 398
LE +E+AKE + + K +KE SN ++ ++ + K S ++ P T +H Q
Sbjct: 21 LEAKEEAKEPTKEEPKESKENSNYSEKMTVKKEDAEKYGKISPHEWPPPPPTEEHKVVHQ 80
Query: 399 LKQEIQEYKPPMSRI--SMDLFPKELGKVEVIIQKVGKNLKV---------SVISHNNSL 447
L ++ + ++I +DL K+ +++K+ + L+ + H S
Sbjct: 81 LDDVTRDSEVKATQIFDQLDLIGASAEKIAKMVKKIQEPLQKHQEIFDNLHAHFPHVESF 140
Query: 448 QTFLDNQQDLKNSLNALGFEGVDLSFS 474
+T L+ QQ++ N+L ++ E + S S
Sbjct: 141 KTALNEQQEILNALKSIEEEAANCSDS 167
>ref|NP_223894.1| PROTEIN-EXPORT MEMBRANE PROTEIN [Helicobacter pylori J99]
Length = 198
Score = 35.4 bits (80), Expect = 0.004
Identities = 32/117 (27%), Positives = 44/117 (37%), Gaps = 9/117 (7%)
Query: 292 SKKKSEKTPIHAKTQTTAPSATPENAPKI-PLK---TPPLMPLIGANPPPNDNIPTPLEK 347
+K E +P+ T T P+ P P + PL+ T PLMP P + TP +
Sbjct: 84 TKTNKELSPLVPATGTLNPTLNPTLNPTLNPLEQAPTNPLMPTQTPKELPKEPAKTPFVE 143
Query: 348 EEKAKEASDNKEKTKETSNSAQNAQNTQASDKTSDNKSTAPK--ETIKHFTQQLKQE 402
K E EK N + + + + KT PK T T Q K E
Sbjct: 144 SPKQNE---KNEKNDAKENGIKGVEKNKENAKTPPTTHQKPKTHATTNAHTNQKKDE 197
Score = 32.3 bits (72), Expect = 0.030
Identities = 34/116 (29%), Positives = 44/116 (37%), Gaps = 16/116 (13%)
Query: 80 EKTPTLPHQHAQNPAKDQQAPTLKDWLNHKK---------TTTPHETQHETHEANETNPK 130
E +P +P NP + PTL LN + T TP E E +
Sbjct: 89 ELSPLVPATGTLNPTLN---PTLNPTLNPLEQAPTNPLMPTQTPKELPKEPAKTPFVESP 145
Query: 131 TPNETLNKNEKKPNGVTSSVHQTNLTNKNPITPTNHANNAIKNPT-APTDTKKEPK 185
NE KN+ K NG+ V + K P PT H T A T+ KK+ K
Sbjct: 146 KQNEKNEKNDAKENGI-KGVEKNKENAKTP--PTTHQKPKTHATTNAHTNQKKDEK 198
Score = 28.5 bits (62), Expect = 0.44
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 11/44 (25%)
Query: 482 QAPKDQPKEPFK-----------EQELTPLKENALKSYQENTDN 514
Q PK+ PKEP K + E KEN +K ++N +N
Sbjct: 127 QTPKELPKEPAKTPFVESPKQNEKNEKNDAKENGIKGVEKNKEN 170
Score = 25.0 bits (53), Expect = 4.9
Identities = 23/71 (32%), Positives = 29/71 (40%), Gaps = 8/71 (11%)
Query: 29 KNAPKSASKD-FSKILNQKISKDKTAPKENPNALKTTPQNSKEGAKEDAKTLEKTPTLPH 87
K PK +K F + Q +K KEN +K +N KE+AKT T P
Sbjct: 130 KELPKEPAKTPFVESPKQNEKNEKNDAKEN--GIKGVEKN-----KENAKTPPTTHQKPK 182
Query: 88 QHAQNPAKDQQ 98
HA A Q
Sbjct: 183 THATTNAHTNQ 193
>ref|NP_223194.1| cag island protein [Helicobacter pylori J99]
Length = 1819
Score = 34.7 bits (78), Expect = 0.006
Identities = 45/198 (22%), Positives = 79/198 (39%), Gaps = 11/198 (5%)
Query: 211 ENKNPLNASDQLALKTTQTPTNHTLAKNDAKNTANLSSVLQSLEKKEPQNKEHANPLNNE 270
E N + L ++T++ NH + K + + ++ + + E + N
Sbjct: 25 EEATEANHFEDLLKESTESSDNHLDNPTETKTHFDEDKLEETQTQMDSGGNETSESSNGS 84
Query: 271 KKTPPLKEALEMNAIKRDKTLSKKKSEKTPIHAKTQTTAPSATPENAPKIPLKTPPLMPL 330
K+A ++ KR T K E+T Q EN L+
Sbjct: 85 LADKLFKKARKLVDDKRPFTQQKSLDEET------QKLNEEDDQENNEHQEETQTDLIDD 138
Query: 331 IGANPPPNDNIPTPLEKEEKAKEASDNKEKTKETSNSAQNAQN--TQASDKTSDNKS-TA 387
+ D+ P L EE A EA+ ++ KE++ S+ N + T++SD DN + T
Sbjct: 139 ETSEKTQQDS-PQDLSNEE-ATEANHFEDLLKESTESSDNHLDNPTESSDNHLDNPTETK 196
Query: 388 PKETIKHFTQQLKQEIQE 405
+ET HF + +EI +
Sbjct: 197 TQETKTHFDEDKPEEITD 214
Score = 32.0 bits (71), Expect = 0.040
Identities = 43/190 (22%), Positives = 78/190 (40%), Gaps = 20/190 (10%)
Query: 338 NDNIPTPLEKEEKAKEASDNKEKTKETSNSAQNAQNTQASDKTSDNKSTAPKETIKHFTQ 397
ND + T + ++ + + N+E T+ ++T++SD DN P ET HF +
Sbjct: 5 NDKLETSKKAQQDSPQDLSNEEATEANHFEDLLKESTESSDNHLDN----PTETKTHFDE 60
Query: 398 QLKQEIQEYKPPMSRISMDLFPKELGKVEVIIQKVGKNL--KVSVISHNNSL--QTFLDN 453
+++E + M + G + + K + L + SL +T N
Sbjct: 61 ---DKLEETQTQMDSGGNETSESSNGSLADKLFKKARKLVDDKRPFTQQKSLDEETQKLN 117
Query: 454 QQDLKNSLNALGFEGVDLSFSQDSSKEQQ-APKDQPKEPFKE--------QELTPLKENA 504
++D + + DL + S K QQ +P+D E E +E T +N
Sbjct: 118 EEDDQENNEHQEETQTDLIDDETSEKTQQDSPQDLSNEEATEANHFEDLLKESTESSDNH 177
Query: 505 LKSYQENTDN 514
L + E++DN
Sbjct: 178 LDNPTESSDN 187
>ref|NP_223801.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 1237
Score = 33.1 bits (74), Expect = 0.018
Identities = 91/493 (18%), Positives = 163/493 (32%), Gaps = 92/493 (18%)
Query: 61 LKTTPQNSKEGAKEDAKTLEKTPTLPHQHAQNPAKDQQAPTLKDWLNHKKTTTPHETQHE 120
L T QN+ G + LE Q QN PT + N + + Q
Sbjct: 294 LSTNNQNNPNGCANQIQCLE-------QFIQNLTPLAATPTSTNQANQQVQAIAQKLQSV 346
Query: 121 THEANETNPKTPNETLNKNEKKPNGVTSSVHQTNLTNKNPIT----------PTNHANNA 170
A + N N T N N N + +Q+ + N P N N
Sbjct: 347 AINALDNNAIN-NTTYNLNNLH-NALNFQAYQSTIEQYNNALKQISWISFSEPKNLLKNT 404
Query: 171 IKNPTAPTDTKKEPKTLKDIQTLSQKHDLNA---SNIQAATTPENKNPLNASDQLALKTT 227
N T T + + + S L++ S I + T N N+ D + T+
Sbjct: 405 SNNYQIGTVTNDQGQNISAYDCTSATGSLSSDASSGISCSATSSTNNT-NSFDNSLVATS 463
Query: 228 QTPT---NHTLAKNDAKNTANLSSVLQSLEKKEPQNKEHANPLNN---EKKTPPLKEALE 281
+ T + N + + SV SL+ E +++A L N + T P
Sbjct: 464 KVQTINGKEQIGVNSFNLVSQVWSVYNSLKTSEENLQKNAKILCNNGSQSGTSPC----- 518
Query: 282 MNAIKRDKTLSKKKSEKTPIHAKTQTTAPSATPENAPKIPLKTPPLMPLIGANPPPNDNI 341
N+ ++S + + TT + NA K+
Sbjct: 519 -NSSSGGLSISGNAQLQNILSPTNGTTTNTQAKSNASKL--------------------- 556
Query: 342 PTPLEKEEKAKEASDNKEKTKETSNSAQNAQNTQASDKTSDNKSTAPKETIKHFTQQLKQ 401
KA +N+E+ K T+ + + TQ+S+ T + + +F Q ++
Sbjct: 557 --------KAMVMVNNEEEAKTTNFNQSSGPTTQSSNSTVMGALNTVLQNVSNFQQSIQS 608
Query: 402 EIQEYKPPMSRISMDLFPKELGKVEVIIQKVGKNLKVSVISHNNSLQTFLDNQQDLKNSL 461
Q + + + L+ S + N S +N QDL+ L
Sbjct: 609 AFQNQENNIQAWANALY------------------NTSNPNGNQSQNLTTNNNQDLRIQL 650
Query: 462 NALGFEGVDLSFSQDSSKEQQAPKDQPKEPFKEQELTPLKENALKS---------YQENT 512
A ++ ++ + +Q + A +Q ++ + NA S YQ+ +
Sbjct: 651 RANFYQLIN-TINQQVPTDMNALINQSQQTQQTSGSASTTNNACASGMGSSGNWCYQQWS 709
Query: 513 DNENQETSMQITL 525
D++ + +Q L
Sbjct: 710 DSKAYYSGLQSAL 722
Score = 24.3 bits (51), Expect = 8.3
Identities = 14/47 (29%), Positives = 20/47 (41%)
Query: 200 NASNIQAATTPENKNPLNASDQLALKTTQTPTNHTLAKNDAKNTANL 246
N++N T+ N N TT T +N NDA+ AN+
Sbjct: 820 NSTNGSNGTSGSNCYEPNKQQNATTATTTTDSNLQKVYNDAQKIANI 866
>ref|NP_223147.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 371
Score = 32.7 bits (73), Expect = 0.023
Identities = 38/152 (25%), Positives = 68/152 (44%), Gaps = 20/152 (13%)
Query: 115 HETQHETHEANETNPKTPNETLNKNEKKPNGVTSSVHQTNLTNKNPITPTNHANNAIKNP 174
H +H N+ +T + NK K N V + + TN+ N N+ NNA+KN
Sbjct: 42 HAVEHNNPFLNQERIQTISNAQNKIYKL-NQVKNEI--TNMPNT-----FNYINNALKNN 93
Query: 175 TAPTDTKKEPK------TLKDIQTLSQKHDLNASNIQAATTPEN-----KNPLNASDQLA 223
T T+K+ + TL++I+ + ASN + A E NPL + L
Sbjct: 94 AKLTPTEKQAETYYLQSTLQNIEKIVMLSGGVASNPKLAQALEKMQEPITNPLELVENLK 153
Query: 224 -LKTTQTPTNHTLAKNDAKNTANLSSVLQSLE 254
L+ + + +++ + + A +S+ L +L+
Sbjct: 154 NLELQFSQSQNSMLSSLSSQIAQISNSLNALD 185
>ref|NP_223039.1| putative [Helicobacter pylori J99]
Length = 186
Score = 32.7 bits (73), Expect = 0.023
Identities = 15/61 (24%), Positives = 28/61 (45%)
Query: 237 KNDAKNTANLSSVLQSLEKKEPQNKEHANPLNNEKKTPPLKEALEMNAIKRDKTLSKKKS 296
+ DAKN LS++ + + K+ + H N+E L E +K+ + L +K
Sbjct: 124 RKDAKNFEKLSNIAEEIISKKQEESHHKEDSNDENHKDKLSNITEEMILKKQEELKARKD 183
Query: 297 E 297
+
Sbjct: 184 K 184
>ref|NP_222894.1| putative [Helicobacter pylori J99]
Length = 268
Score = 32.7 bits (73), Expect = 0.023
Identities = 32/142 (22%), Positives = 54/142 (37%), Gaps = 24/142 (16%)
Query: 234 TLAKNDAKNTANLSSVLQSLEKKEPQNKEHANPLNNEKKTPPLKEALEMNAIKRDKTLSK 293
+L + K L V+ +++K+E +N + P+ ++ +K E K++
Sbjct: 78 SLNMDSPKQEDKLDKVVDNIKKQESEN---SMPIQTDQAQMEMKTTEE----KQESQKEL 130
Query: 294 KKSEKTPIHAK--TQTTAPSATPENAPKIPLKTPPLMPLIGANPPPNDNIPTPLEKEEKA 351
K E P+ + +Q A TP PK+ P D + + A
Sbjct: 131 KAVEPIPMSTQKESQAVAKKETPHKKPKVA---------------PKDKEAHKDKAKHAA 175
Query: 352 KEASDNKEKTKETSNSAQNAQN 373
KE KE KE S A + N
Sbjct: 176 KEPKVKKEARKEVSKKANSKTN 197
Score = 25.8 bits (55), Expect = 2.8
Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
Query: 340 NIPTPLEKEEKAKEASDNKEKTKETSNSAQNAQNTQASDKTSDNKSTAPK-----ETIKH 394
N+ +P ++E+K + DN +K + ++ Q KT++ K + K E I
Sbjct: 80 NMDSP-KQEDKLDKVVDNIKKQESENSMPIQTDQAQMEMKTTEEKQESQKELKAVEPIPM 138
Query: 395 FTQQLKQEIQEYKPPMSRISMDLFPKELGK 424
TQ+ Q + + + P + + KE K
Sbjct: 139 STQKESQAVAKKETPHKKPKVAPKDKEAHK 168
>ref|NP_223640.1| Component of conjugal plasmid transfer system [Helicobacter pylori
J99]
Length = 511
Score = 32.0 bits (71), Expect = 0.040
Identities = 31/120 (25%), Positives = 54/120 (44%), Gaps = 4/120 (3%)
Query: 191 QTLSQKHDLNASNIQAATTPENKNPLNASDQLALKTTQTPTNHTLAKNDAKNTANLSSVL 250
Q + K N ++ TTP+ KN ++ ++ LA QTP+ A N+ + L V
Sbjct: 384 QDEAMKAKRNNMHLIEDTTPQPKNAISVTELLAQIKNQTPSKECRALNE-EEVKTLEEVK 442
Query: 251 QSLEKKEPQNKEHANPLNNEKKTPPLKEALEMNAIKRDKTL-SKKKSEKTPIHAKTQTTA 309
++ +P K+ N +K T + + + I+R KT +K +K + K Q A
Sbjct: 443 NIIKTPKPLQKDLKK--NAKKHTIKTQYCVPIPYIERLKTTDGLEKHQKGLNNTKKQIQA 500
>ref|NP_223427.1| putative PROBABLE N-ACETYLMURAMOYL-L-ALANINE AMIDASE [Helicobacter
pylori J99]
Length = 469
Score = 32.0 bits (71), Expect = 0.040
Identities = 34/134 (25%), Positives = 49/134 (36%), Gaps = 3/134 (2%)
Query: 252 SLEKKEPQNKEHANPLNNEKKTPPLKEALEMNAIKRDKTLSKKKSEKTPIHAKTQTTAPS 311
S+ +K+P + P K LK K K +KK EKT HA ++
Sbjct: 113 SIMEKKPLIRHQMTP--KPPKHHALKHQTPKPTPKPIKKEAKKAKEKTTKHAHSKHAHSP 170
Query: 312 ATPENAPK-IPLKTPPLMPLIGANPPPNDNIPTPLEKEEKAKEASDNKEKTKETSNSAQN 370
+A K IP K P + P + + K+E K+ KE E+ N
Sbjct: 171 LNERSAKKEIPKKEIPKKEIPKKEIPKKEIPKKEIPKKEIPKKEIPKKEAENESKNQIFI 230
Query: 371 AQNTQASDKTSDNK 384
A+ KT K
Sbjct: 231 AEKNDTWIKTKRKK 244
>ref|NP_223830.1| putative [Helicobacter pylori J99]
Length = 383
Score = 31.6 bits (70), Expect = 0.052
Identities = 18/70 (25%), Positives = 35/70 (49%), Gaps = 1/70 (1%)
Query: 454 QQDLKNSLNALGFEGVDLSFSQDSSKEQQAPKDQPKEPFKEQELTPLKENALKSYQENTD 513
Q++ +N+ + G++L ++ EQ+ K + ++ EQE ++ K+ QE
Sbjct: 107 QKEAENARDRANKSGIELE-QEEQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTEQEKQK 165
Query: 514 NENQETSMQI 523
N ET+ QI
Sbjct: 166 TSNIETNNQI 175
Score = 25.8 bits (55), Expect = 2.8
Identities = 14/68 (20%), Positives = 29/68 (42%)
Query: 346 EKEEKAKEASDNKEKTKETSNSAQNAQNTQASDKTSDNKSTAPKETIKHFTQQLKQEIQE 405
E + KEA + +++ ++ + + +K + E K T+Q KQ+ ++
Sbjct: 102 EVAQAQKEAENARDRANKSGIELEQEEQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTEQ 161
Query: 406 YKPPMSRI 413
K S I
Sbjct: 162 EKQKTSNI 169
Score = 24.6 bits (52), Expect = 6.3
Identities = 11/61 (18%), Positives = 26/61 (42%)
Query: 346 EKEEKAKEASDNKEKTKETSNSAQNAQNTQASDKTSDNKSTAPKETIKHFTQQLKQEIQE 405
E+E++ E K ET+N + Q Q +++ + K+ + Q ++ +
Sbjct: 153 EQEKQKTEQEKQKTSNIETNNQIKVEQEQQKTEQEKQKTNNTQKDLVNKAEQNCQENHNQ 212
Query: 406 Y 406
+
Sbjct: 213 F 213
>ref|NP_223761.1| putative [Helicobacter pylori J99]
Length = 1154
Score = 31.6 bits (70), Expect = 0.052
Identities = 38/152 (25%), Positives = 60/152 (39%), Gaps = 37/152 (24%)
Query: 18 ALNSGAKNEDAKNAPKSASKDFSKILNQKISKDKTAPKENPNALKTTPQNSKEGAKEDAK 77
ALN+G +AK+ S K +++ DK E + QN + G K++ K
Sbjct: 854 ALNNGINEAEAKDYAISVIKTIPEVI------DKGVKVERNGRVAIEYQNIRVGLKDNWK 907
Query: 78 TLEKTPTLPHQHAQNPAKDQQAPTLKDWLNHKKTTTPHETQHETHEANETNPK-TPNETL 136
EK+P W+ T +E + E E+ T+P T ETL
Sbjct: 908 G-EKSPN-------------------HWV-----ITGYEKRLEDSESLYTSPPITKGETL 942
Query: 137 NKNEKKPNGVTSSVHQTNLTNKNPITPTNHAN 168
N KP+ T+++ + P+ P AN
Sbjct: 943 PLNSNKPDPTTNAI-----KTQEPLYPLELAN 969
Score = 29.6 bits (65), Expect = 0.20
Identities = 29/117 (24%), Positives = 47/117 (39%), Gaps = 7/117 (5%)
Query: 15 NANALNSGAKNEDAKNAPKSASKDFSKILNQKISKDKTAPKENPNALKTTPQNSKEGAKE 74
NA+A+ NED K F +I + ++ K+N LKT +++ +
Sbjct: 192 NADAILRTLDNED-----KEVISAFKQINGYAVVVEQAINKKNELVLKTMYKSNGDYKDN 246
Query: 75 DA-KTLEKTPTLPHQHAQNPAKDQQAPTLKDWLNHKKTTTPHETQHETHEANETNPK 130
+A K T TL N + ++ L K T+ + +T NET PK
Sbjct: 247 NAYKKFSSTLTLNADAKVNHGLSSHSGATEN-LTQKPLTSQEDLLKDTENLNETTPK 302
>ref|NP_223247.1| putative SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEIN [Helicobacter
pylori J99]
Length = 317
Score = 31.6 bits (70), Expect = 0.052
Identities = 30/135 (22%), Positives = 47/135 (34%), Gaps = 6/135 (4%)
Query: 291 LSKKKSEKTPIHAKTQTTAPSATPENAPKIPLKTPPLMPLIGANPPPNDNIPTPLEKEEK 350
L K E + + + PS APK P P P PP P P+EK +
Sbjct: 57 LVKLNPENLLVLKRGHSQDPSKNNPGAPK-PTLAGPQKPPTPPTPPTPPTPPKPIEKPKP 115
Query: 351 AKEASDNKEKTKETSNSAQNAQNTQASDKTSDNKSTAPKETIKHFTQQLKQEIQEYKPPM 410
+ E K + + +K + K+ ++ +Q K I+E KP
Sbjct: 116 EPKPKPKPEPKKPNHKHKALKKVEKVEEKKVVEEKKEEKKVVEQKVEQKK--IEEKKPVK 173
Query: 411 SRI---SMDLFPKEL 422
+ PKE+
Sbjct: 174 KEFDPNQLSFLPKEV 188
>ref|NP_223575.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 366
Score = 31.2 bits (69), Expect = 0.068
Identities = 37/152 (24%), Positives = 67/152 (43%), Gaps = 20/152 (13%)
Query: 115 HETQHETHEANETNPKTPNETLNKNEKKPNGVTSSVHQTNLTNKNPITPTNHANNAIKNP 174
H +H N+ +T + NK K N V + + TN+ N N+ NNA+KN
Sbjct: 37 HAVEHNNPFLNQERIQTISNAQNKIYKL-NQVKNEI--TNMPNT-----FNYINNALKNN 88
Query: 175 TAPTDTKKEPK------TLKDIQTLSQKHDLNASNIQAATTPEN-----KNPLNASDQLA 223
T T+K+ + TL++I+ + ASN + E NPL + L
Sbjct: 89 AKLTPTEKQAETYYLQSTLQNIEKIVMLSGGVASNPKLVQALEKMQEPITNPLELVENLK 148
Query: 224 -LKTTQTPTNHTLAKNDAKNTANLSSVLQSLE 254
L+ + + +++ + + A +S+ L +L+
Sbjct: 149 NLELQFSQSQNSMLSSLSSQIAQISNSLNALD 180
>ref|NP_223176.1| putative [Helicobacter pylori J99]
Length = 450
Score = 31.2 bits (69), Expect = 0.068
Identities = 30/157 (19%), Positives = 66/157 (41%), Gaps = 8/157 (5%)
Query: 251 QSLEKKEPQNKEHANPLNNEKKTPPLKEALEMNAIKRDKTLSKKKSEKTPIHAKTQTTAP 310
Q E+K +E + KKT K+A+E +R+K ++ ++T K
Sbjct: 290 QKAERKFDAKEERRRSRDERKKTKATKKAMEFE--EREKEHDERDEKETEERRKALEMDK 347
Query: 311 SATPENAPKIPLKTPPLMPLIGANPPPNDNIPTPLEKEEKA--KEASDNKEKTKETSNSA 368
NA + + + AN P ++N T + E + KE++ KE K +S
Sbjct: 348 GNEKVNAKENERE----INQESANEPSSENNATLKDTENTSVLKESAAKKEAPKPSSKEE 403
Query: 369 QNAQNTQASDKTSDNKSTAPKETIKHFTQQLKQEIQE 405
+ + ++ ++ ++ + ++ ++E++E
Sbjct: 404 KRRLKEEKKKAKAEQRAREFEQRAREHQERDEKELEE 440
Score = 30.8 bits (68), Expect = 0.088
Identities = 38/170 (22%), Positives = 64/170 (37%), Gaps = 18/170 (10%)
Query: 116 ETQHETHEANETNPKTPNETLNKNEKKPNGVTSSVHQTNLTNKNPITPTNHANNAIKNPT 175
E + E +A E + E + + +K G ++ L KN +A +
Sbjct: 248 EKKEERIDARENKREIKQEAIKEPKKANQGTENA---PTLEEKN-YQKAERKFDAKEERR 303
Query: 176 APTDTKKEPKTLKDIQTLSQKHDLNASNIQAATTPENK--------NPLNASDQLALKTT 227
D +K+ K K ++ + + T K +NA + +
Sbjct: 304 RSRDERKKTKATKKAMEFEEREKEHDERDEKETEERRKALEMDKGNEKVNAKEN-EREIN 362
Query: 228 QTPTNHTLAKNDA--KNTANLSSVLQSLEKKE---PQNKEHANPLNNEKK 272
Q N ++N+A K+T N S + +S KKE P +KE L EKK
Sbjct: 363 QESANEPSSENNATLKDTENTSVLKESAAKKEAPKPSSKEEKRRLKEEKK 412
Score = 30.4 bits (67), Expect = 0.12
Identities = 29/136 (21%), Positives = 54/136 (39%), Gaps = 13/136 (9%)
Query: 9 HTNASANANALNSGAKNEDAKNAPKSASK--DFSKILNQKISKDKTAPKENPNALKTTPQ 66
+ A +A ++ D + K+ K +F + + +D+ +E AL+
Sbjct: 289 YQKAERKFDAKEERRRSRDERKKTKATKKAMEFEEREKEHDERDEKETEERRKALEMDKG 348
Query: 67 NSKEGAKEDAKTLEKTPTLPHQHAQNPAKDQQAPTLKDWLNHKKTTTPHETQHETHEANE 126
N K AKE+ + + +Q + N + TLKD N T+ + EA +
Sbjct: 349 NEKVNAKENEREI-------NQESANEPSSENNATLKDTEN----TSVLKESAAKKEAPK 397
Query: 127 TNPKTPNETLNKNEKK 142
+ K L + +KK
Sbjct: 398 PSSKEEKRRLKEEKKK 413
Score = 27.7 bits (60), Expect = 0.75
Identities = 37/183 (20%), Positives = 76/183 (41%), Gaps = 24/183 (13%)
Query: 339 DNIPTPLEKE-EKAKEASDNKEKTKETSNSAQNAQNTQASDKTSDNKSTAPKETIKHFTQ 397
+N PT EK +KA+ D KE+ + + + + + T+ K+ +E K +
Sbjct: 279 ENAPTLEEKNYQKAERKFDAKEERRRSRDERKKTKATK--------KAMEFEEREKEHDE 330
Query: 398 QLKQEIQEYKPPMSRISMDLFPKELGKVEVIIQKVGKNLKVSVISHNNSLQTFLDNQQDL 457
+ ++E +E + + E+ K +KV I+ ++ + +N L
Sbjct: 331 RDEKETEERRKAL----------EMDKGN---EKVNAKENEREINQESANEPSSENNATL 377
Query: 458 KNSLNA--LGFEGVDLSFSQDSSKEQQAPKDQPKEPFKEQELTPLKENALKSYQENTDNE 515
K++ N L + SSKE++ + K+ K ++ E + +QE + E
Sbjct: 378 KDTENTSVLKESAAKKEAPKPSSKEEKRRLKEEKKKAKAEQRAREFEQRAREHQERDEKE 437
Query: 516 NQE 518
+E
Sbjct: 438 LEE 440
>ref|NP_223207.1| cag island protein [Helicobacter pylori J99]
Length = 370
Score = 30.8 bits (68), Expect = 0.088
Identities = 22/79 (27%), Positives = 36/79 (44%), Gaps = 1/79 (1%)
Query: 144 NGVTSSVHQTNLTNKNPITPTNHANNAIKNPTAPTDTKKEPKTLKDIQTLSQKHDLNASN 203
N +S+ +N T KNP +A N I P+ PT + L +I + + K+ L A
Sbjct: 126 NSQIASILASNTTPKNPSAIEAYATNQIAVPSVPTTVEMMSGILGNITSAAPKYAL-ALQ 184
Query: 204 IQAATTPENKNPLNASDQL 222
Q + N + + +D L
Sbjct: 185 EQLRSQASNSSMNDTADSL 203
>ref|NP_223770.1| putative [Helicobacter pylori J99]
Length = 331
Score = 30.4 bits (67), Expect = 0.12
Identities = 26/113 (23%), Positives = 48/113 (42%), Gaps = 11/113 (9%)
Query: 194 SQKHDLNASNIQAATTPENKNPLNASDQLA--LKTTQTPTNHTLAKNDAKNTANLSSVLQ 251
SQ+ N Q+ T + +N ++A+ Q L + L K + ++ + +
Sbjct: 95 SQEVQANTLKQQSQTLEDLRNEIHANQQAIQQLDKQNKEMSELLTKLSQDLVSQIALIQK 154
Query: 252 SLEKKEPQNKEHANPLNNEKKTPPLKEALEMNAIKR---------DKTLSKKK 295
+L+++E + ++ K PPLK N K+ DK LSK+K
Sbjct: 155 ALKEQEEKAEKPLKSSTPANKNPPLKAETPKNQEKKTQEKAKVEFDKDLSKQK 207
>ref|NP_222964.1| EXODEOXYRIBONUCLEASE LARGE SUBUNIT [Helicobacter pylori J99]
Length = 420
Score = 30.4 bits (67), Expect = 0.12
Identities = 33/96 (34%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Query: 244 ANLSSVLQSLEKKEPQNKEHANPLNNEKKTPPL-KEALEMNAIKRDKTLSKKKSEKTPIH 302
A+L + SL++ +NK H N L EK T L + LE +K KTL +K S +
Sbjct: 293 AHLEHLAASLKRLSFENKHHLNALKLEKLTIALDNKTLEFLRLK--KTLLEKISTQLSTS 350
Query: 303 AKTQT-TAPSATPENAPKIP---LKTPPLMPLIGAN 334
QT T ENA K+ LK P L+ N
Sbjct: 351 PFLQTKTERLNRLENALKLAYANLKLPQFGALVSKN 386
>ref|NP_223195.1| cag island protein [Helicobacter pylori J99]
Length = 522
Score = 30.0 bits (66), Expect = 0.15
Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Query: 322 LKTPPLMPLIGANPPPNDNIPTPLEKEEKAKEASDNKEKTKETSNSAQNAQNTQASDKTS 381
LKT L+ + +P + LEKE++AKE + +K K + A+N +A+ +
Sbjct: 126 LKTKKLI-VDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKN-RANLENL 183
Query: 382 DNKSTAPK--ETIKHFTQQLKQEIQEYKPPMSRI 413
N + P+ K+ ++ +KQ+ + M R+
Sbjct: 184 TNAMSNPQNLSNNKNLSELIKQQRENELDQMERL 217
Score = 29.3 bits (64), Expect = 0.26
Identities = 24/130 (18%), Positives = 51/130 (38%), Gaps = 5/130 (3%)
Query: 183 EPKTLKDIQTLSQKHDLNASNIQAATTP--ENKNPLNASDQLALKTTQTPTNHTLAKNDA 240
+PK L++ + +K Q A E + A ++ L+ TN +
Sbjct: 137 DPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANLENL---TNAMSNPQNL 193
Query: 241 KNTANLSSVLQSLEKKEPQNKEHANPLNNEKKTPPLKEALEMNAIKRDKTLSKKKSEKTP 300
N NLS +++ + E E + + + LK+ E+N + ++ + ++ +K
Sbjct: 194 SNNKNLSELIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQAEEAVRQRAKDKIS 253
Query: 301 IHAKTQTTAP 310
I +P
Sbjct: 254 IKTDKSQKSP 263
>ref|NP_222962.1| putative [Helicobacter pylori J99]
Length = 222
Score = 30.0 bits (66), Expect = 0.15
Identities = 30/95 (31%), Positives = 42/95 (43%), Gaps = 8/95 (8%)
Query: 182 KEPKTLKDIQTLSQKHDLNASNIQAATTPENKNPLNASDQL-ALKTTQTPTNHTLAKNDA 240
K+ K K +T S+ D ++ I EN NA + L ALK + LAK D
Sbjct: 116 KQAKDSKIGETYSKMKDSKSALIL-----ENLPTQNALEILMALKPQEL--GKILAKMDP 168
Query: 241 KNTANLSSVLQSLEKKEPQNKEHANPLNNEKKTPP 275
K A L+ + Q K+ +NKE + TPP
Sbjct: 169 KKAAALTELWQKPPKENKENKESQKTTDPTPPTPP 203
>ref|NP_223108.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 455
Score = 29.6 bits (65), Expect = 0.20
Identities = 32/133 (24%), Positives = 50/133 (37%), Gaps = 11/133 (8%)
Query: 24 KNEDAKNAPKSASKDFSKILNQK-ISKDKTAPKENPNALKTTPQNSKEGAKEDAKTL-EK 81
+ E+ K AP + + LN++ + ++ E L N + KTL EK
Sbjct: 52 EEEENKKAPLIPESLYDEELNEEDVVMQLSSTVEEMRKLAGVSSNQRNYTFSKNKTLLEK 111
Query: 82 TPTLPHQHAQNPAKDQQAPTLKDWLNHKKTTTPHETQHETHEANETNPKTPN-------- 133
L + +D LKD NHKK E + E E + N +
Sbjct: 112 DAPLEDTPLEANKQDALLQALKDEANHKKEREKREVKQE-EEIKDINAQLSKIRDSLKLI 170
Query: 134 ETLNKNEKKPNGV 146
+ + +EK PN V
Sbjct: 171 QNMFWDEKNPNSV 183
>ref|NP_223617.1| putative [Helicobacter pylori J99]
Length = 500
Score = 28.9 bits (63), Expect = 0.34
Identities = 22/72 (30%), Positives = 36/72 (49%), Gaps = 9/72 (12%)
Query: 400 KQEIQEYKPPMSRISMDLFPKELGKVEVIIQKVGKNLKVSVISHNNSLQTFLDNQQDLKN 459
+Q +QE P + + +EL K +Q ++LKV +I H + ++ L
Sbjct: 19 EQGLQEKAKPFMSDNAVIKTEELEKTLKEMQAEDRDLKVGIIGHVKAGKSSL-------- 70
Query: 460 SLNALGFEGVDL 471
LNAL FEGV++
Sbjct: 71 -LNALIFEGVEV 81
Score = 24.6 bits (52), Expect = 6.3
Identities = 16/71 (22%), Positives = 38/71 (52%), Gaps = 3/71 (4%)
Query: 345 LEKEEKAKEASDNKEKTKETSNSAQNAQNTQASDKTSDNKSTAPKETIKH---FTQQLKQ 401
+ K+ + + + + +KT+E N+ +N +++ +SD+KS + + ++LK+
Sbjct: 388 MHKDFENQASWERNQKTEEYHNALRNLRDSYPDAFSSDDKSKESSLFLINMGAIEERLKK 447
Query: 402 EIQEYKPPMSR 412
QE + MS+
Sbjct: 448 AAQEKEKIMSQ 458
>ref|NP_222829.1| DNA TOPOISOMERASE I [Helicobacter pylori J99]
Length = 736
Score = 28.9 bits (63), Expect = 0.34
Identities = 18/54 (33%), Positives = 23/54 (42%)
Query: 260 NKEHANPLNNEKKTPPLKEALEMNAIKRDKTLSKKKSEKTPIHAKTQTTAPSAT 313
NK A L +EKK +K LE + + K K TP T T SA+
Sbjct: 211 NKLKAQELIDEKKAQEIKNELEKESYIISSIIKKSKKSPTPPPFMTSTLQQSAS 264
>ref|NP_222812.1| methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
Length = 675
Score = 28.9 bits (63), Expect = 0.34
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 217 NASDQLALKTTQTPTNHTLAKNDAKNTANLSSVLQSLEKKEPQNKEHANPLNNEKKTPPL 276
NA Q K +T +N AK+ A ++ANL +Q+LEK N +H + + K +
Sbjct: 471 NALGQEIQKMLETSSN--FAKDLANDSANLKECVQNLEK--ASNSQHKSLMETSKTIENI 526
Query: 277 KEALEMNAIKRDKTLSKKKSEKT 299
+++ + + + + + K K+
Sbjct: 527 TTSIQGVSSQSEAMIEQGKDIKS 549
>ref|NP_223860.1| putative [Helicobacter pylori J99]
Length = 234
Score = 28.5 bits (62), Expect = 0.44
Identities = 18/52 (34%), Positives = 22/52 (41%)
Query: 171 IKNPTAPTDTKKEPKTLKDIQTLSQKHDLNASNIQAATTPENKNPLNASDQL 222
+KN KK KTLKDI H L + A +T K P + D L
Sbjct: 21 LKNKARAYGHKKGVKTLKDITIWCANHKLECLTLYAFSTENWKRPKSEVDFL 72
>ref|NP_223661.1| putative [Helicobacter pylori J99]
Length = 255
Score = 28.5 bits (62), Expect = 0.44
Identities = 33/141 (23%), Positives = 54/141 (37%), Gaps = 11/141 (7%)
Query: 123 EANETNPKT-------PNETLNKNEKKPNGVTSSVHQTNLTNKNPITPTNHANNAIKNPT 175
E NE + +T E +N +T + + + N+N I + N +K P
Sbjct: 111 ENNEIDARTFKPWDLGSKEASKENASMSEELTQNNSKLSHFNENSIAQNSVGQNNVKEPN 170
Query: 176 APTDTKKEPKTLKDIQTLSQKHDLNASNIQAATTPENKNPLNASDQLALKTTQTPTNHTL 235
++ K+ +L + L+ D N A EN+ N + +TQ N T
Sbjct: 171 TKSNNSKQNHSLSN-SDLTSNTDYNK---LVADMFENQMDANGNYIGKKFSTQAYDNKTP 226
Query: 236 AKNDAKNTANLSSVLQSLEKK 256
K N + SS L S + K
Sbjct: 227 YKVATGNASEYSSYLYSKKTK 247
>ref|NP_223515.1| putative [Helicobacter pylori J99]
Length = 541
Score = 28.5 bits (62), Expect = 0.44
Identities = 21/78 (26%), Positives = 36/78 (45%), Gaps = 7/78 (8%)
Query: 6 NPIHTNASANANALNSGAKNEDA--KNAPKSASKDFSKILNQKISKDKTAPKENPNALKT 63
N I + N + N+ E+A K APK +SK+ + L ++ K K + +
Sbjct: 459 NAIQQGETKNNESKNTPISKENAAKKEAPKPSSKEEKRRLKEEKKKAKAEQR-----ARE 513
Query: 64 TPQNSKEGAKEDAKTLEK 81
Q ++E + D K LE+
Sbjct: 514 FEQRAREHQERDEKELEE 531
Score = 25.4 bits (54), Expect = 3.7
Identities = 21/68 (30%), Positives = 35/68 (50%), Gaps = 10/68 (14%)
Query: 347 KEEKAKEASDNKEKTKETSNSAQNAQ-------NTQASDKTSDNKSTAPKETIKHFTQQL 399
+EE+ K + E TK+ +N+ Q + NT S K + K APK + K ++L
Sbjct: 442 EEEEVK--TRRPEPTKDQNNAIQQGETKNNESKNTPIS-KENAAKKEAPKPSSKEEKRRL 498
Query: 400 KQEIQEYK 407
K+E ++ K
Sbjct: 499 KEEKKKAK 506
Score = 25.0 bits (53), Expect = 4.9
Identities = 15/45 (33%), Positives = 23/45 (50%), Gaps = 1/45 (2%)
Query: 478 SKEQQAPKDQPKEPFKEQELTPLKENALKSYQENTDNENQETSMQ 522
SKE A K+ PK P ++E LKE K+ E E ++ + +
Sbjct: 477 SKENAAKKEAPK-PSSKEEKRRLKEEKKKAKAEQRAREFEQRARE 520
>ref|NP_223642.1| putative [Helicobacter pylori J99]
Length = 195
Score = 27.7 bits (60), Expect = 0.75
Identities = 35/153 (22%), Positives = 62/153 (39%), Gaps = 15/153 (9%)
Query: 232 NHTLAKNDAKNTANLSSVLQSLEKKEP-----QNKEHANPLNNEKKTPPLKEALEMNAIK 286
N + D + L SL KE N+++ L+N++ + L +A +
Sbjct: 47 NEVIKAQDNELVKEFMQELSSLSFKEQLEFYQTNRDYDPSLDNDENSSELLDAFTSSL-- 104
Query: 287 RDKTLSKKKSEKTPIHAKTQTTAPSATPENAPKIPLKTPPLMPLI--GANPPPNDNIPTP 344
+ L K+K PI + + + +N L+ L +NP P D T
Sbjct: 105 --ENLEKQKIN--PIREQKRESGWQNNEDNKENSELEKAFKKDLSFSQSNPIPLDKKET- 159
Query: 345 LEKEEKAKEASDNKEKTKETSNSAQNAQNTQAS 377
KEEK +E +++ KET A + +++ S
Sbjct: 160 -SKEEKEEELESKEKEPKETLGFAHSFSSSRFS 191
>ref|NP_223075.1| ATP-DEPENDENT ZINC METALLOPEPTIDASE [Helicobacter pylori J99]
Length = 632
Score = 27.7 bits (60), Expect = 0.75
Identities = 14/64 (21%), Positives = 30/64 (46%)
Query: 359 EKTKETSNSAQNAQNTQASDKTSDNKSTAPKETIKHFTQQLKQEIQEYKPPMSRISMDLF 418
EK + + + S+KT++ K ++ Q +KQ + +Y+ + + +LF
Sbjct: 538 EKQRNAFLGGGYGSSREFSEKTAEEMDLFIKNLLEERYQHVKQTLSDYREAIEIMVKELF 597
Query: 419 PKEL 422
KE+
Sbjct: 598 DKEV 601
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 27.3 bits (59), Expect = 0.98
Identities = 39/193 (20%), Positives = 68/193 (35%), Gaps = 35/193 (18%)
Query: 109 KKTTTPHETQHETHEANETNPKTPNETLNKNEKKPNGVTSSVHQTNLTNKNPITPTNHAN 168
+K T E + + +T+ + +T+ K ++ T L + I T N
Sbjct: 287 QKETITEEFKKQLESYFDTSYQESTDTIKKMKEDYTNKTDEA----LERLDEIIKTEQNN 342
Query: 169 NAIKNPTAPTDTKKEPKTLKDIQTLSQKHDLNASNIQAAT--TPENKNPLNASDQLALKT 226
+ K T + K+ +TL+ +Q+ ++ S + NKN ++A L K
Sbjct: 343 SQTKLDTE--NLKRIIETLRSKIKANQQKMIDKSKEMSRNFKLDSNKNEIDAIKDLIKKA 400
Query: 227 TQTPTNHTLAKNDA---------------------------KNTANLSSVLQSLEKKEPQ 259
+ TNH D K L + +LEK+ +
Sbjct: 401 NEQITNHNETIKDIEKQKKSCKEQTWKFLINEFKSDIQEYNKKYCGLEKGINNLEKEISE 460
Query: 260 NKEHANPLNNEKK 272
N+E L NE K
Sbjct: 461 NQEKVKKLENEIK 473
Score = 26.9 bits (58), Expect = 1.3
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 345 LEKEEKAKEASDNKEKTKETSNSAQNAQNTQASDK-TSDNKSTAPKETIKHFTQQLKQEI 403
LEK E KE S NKE K+ N A TQ +K D + K K ++ K+ +
Sbjct: 120 LEKIESKKE-SINKENEKKIKNEASLQVLTQKKEKEEKDFTDSCWKNLYKKNEEEFKEIL 178
Query: 404 QEYK 407
+ +K
Sbjct: 179 EGFK 182
Score = 25.8 bits (55), Expect = 2.8
Identities = 24/116 (20%), Positives = 49/116 (41%), Gaps = 17/116 (14%)
Query: 370 NAQNTQASDKTSD---NKSTAPKETIKHFTQQLKQEIQEYKPPMSRISMDL--FPKELGK 424
N Q T ++ D K + ++T K + K +IQEY + + KE+ +
Sbjct: 401 NEQITNHNETIKDIEKQKKSCKEQTWKFLINEFKSDIQEYNKKYCGLEKGINNLEKEISE 460
Query: 425 VEVIIQKVGKNLKVSVISHNNSLQTFLDNQQDLKNSLNAL----GFEGVDLSFSQD 476
+ ++K+ +K L+ + + + + N +N L GF L+ ++D
Sbjct: 461 NQEKVKKLENEIK--------ELEKNMVSIKPIVNEINTLLKGYGFTNFSLACTED 508
Score = 24.3 bits (51), Expect = 8.3
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 352 KEASDNKEKTKETSNSAQNAQNTQASDKTSDNK 384
KE S+N+EK K+ N + + S K N+
Sbjct: 456 KEISENQEKVKKLENEIKELEKNMVSIKPIVNE 488
>ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [Helicobacter pylori J99]
Length = 681
Score = 27.3 bits (59), Expect = 0.98
Identities = 13/50 (26%), Positives = 25/50 (50%)
Query: 344 PLEKEEKAKEASDNKEKTKETSNSAQNAQNTQASDKTSDNKSTAPKETIK 393
P +++AK + + K KE++ +N + + K + K + KET K
Sbjct: 11 PKRAKQEAKTEATQENKAKESNKENKNNKAKEGKIKEAKTKESKVKETAK 60
>ref|NP_222767.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 343
Score = 27.3 bits (59), Expect = 0.98
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 265 NPLNNEKKTPPLKEALEMNAIKRDKTLSKKKSEKTPIHA 303
NP+ NE K P + LE K DK K++ PIHA
Sbjct: 151 NPIFNEPKIPYTPQDLEKRFPKIDK--DKRRYTTVPIHA 187
>ref|NP_224124.1| L-SERYL-TRNA(SER) SELENIUM TRANSFERASE [Helicobacter pylori J99]
Length = 390
Score = 26.9 bits (58), Expect = 1.3
Identities = 15/54 (27%), Positives = 23/54 (41%)
Query: 71 GAKEDAKTLEKTPTLPHQHAQNPAKDQQAPTLKDWLNHKKTTTPHETQHETHEA 124
G KE +TL+ P +L W+NH++ T H H+T +A
Sbjct: 237 GQKEWVETLKNHPLYRALRVGKITLTLLFHSLNAWVNHQEEITIHALLHQTKDA 290
>ref|NP_223380.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 651
Score = 26.9 bits (58), Expect = 1.3
Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 9/111 (8%)
Query: 187 LKDIQTLSQKHDLNASNIQAATTPENKNPLNASDQLALKTTQTPTNHTLAKNDAKNTANL 246
L+ TLSQ + ++++QA T NP A D A Q K ++
Sbjct: 268 LQQAVTLSQSNHTLSASLQAQATGSQTNPKFAKDIYAFAQNQ--------KQVISYAQDI 319
Query: 247 SSVLQSLEKKEPQNKEHAN-PLNNEKKTPPLKEALEMNAIKRDKTLSKKKS 296
++ S+ K + + E A + N KTP E+N + +T+ S
Sbjct: 320 FNLFSSIPKDQYRYLEKAYLKIPNAGKTPTNPYRQEVNLNQEIQTIQNNVS 370
>ref|NP_222794.1| PEPTIDE CHAIN RELEASE FACTOR 1 [Helicobacter pylori J99]
Length = 352
Score = 26.9 bits (58), Expect = 1.3
Identities = 18/62 (29%), Positives = 31/62 (49%), Gaps = 2/62 (3%)
Query: 238 NDAKNTANLSSVLQSLEKKEPQNKEHANPLNNEKKTPPLKEALEMNAIKRD--KTLSKKK 295
+D K LS S+E+ +KE+ + L K+ L E E++ + ++ K L +K
Sbjct: 29 SDIKKLTELSKEQSSIEEISVASKEYLSVLEGIKENKELLEDKELSELAKEELKILEIQK 88
Query: 296 SE 297
SE
Sbjct: 89 SE 90
>ref|NP_224015.1| putative TYPE III RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 779
Score = 26.6 bits (57), Expect = 1.7
Identities = 24/90 (26%), Positives = 39/90 (42%), Gaps = 2/90 (2%)
Query: 434 KNLKVSVISHNNSLQTFLDNQQDLKNSLNALGFEGVDLSFSQDSSKEQQAPKDQPKEPFK 493
+N K ++ + ++ NQ+ L L F ++ F+ + +A K E
Sbjct: 233 ENFKPCILFKSERIEESKKNQERFNAFLENLSFLDLENFFNHSRNAFFKAAKSFFDEQNH 292
Query: 494 EQELTPLKENALK-SYQENTDNENQ-ETSM 521
L L +N K S Q NT+NE + E SM
Sbjct: 293 TPNLVALLQNKFKESVQINTNNEKELEKSM 322
>ref|NP_223759.1| putative [Helicobacter pylori J99]
Length = 267
Score = 26.6 bits (57), Expect = 1.7
Identities = 25/93 (26%), Positives = 45/93 (47%), Gaps = 12/93 (12%)
Query: 217 NASDQLALKTTQTPTNHTLAKNDAKNTAN---LSSVLQSLEKKEPQNKEHANPLNNEKKT 273
NA++Q+ TQ+ T AKN+A N + ++ E K N E +N N +
Sbjct: 156 NANNQITKNKTQSLEAITQAKNNANNEISNNQTQAITNITEAKTNANNEISN--NQTQAI 213
Query: 274 PPLKEALE-----MNAIKRD--KTLSKKKSEKT 299
+ EA E +NA K++ ++++K++ T
Sbjct: 214 TNINEAKESATTQINANKQEAINNITQEKTQAT 246
Score = 25.4 bits (54), Expect = 3.7
Identities = 37/171 (21%), Positives = 71/171 (40%), Gaps = 28/171 (16%)
Query: 134 ETLNKNEKKPNGVTSSVHQTNLTNKNPITPTNHAN-NAIKNPTAPTDTKKEPKTLKDIQT 192
E+L K+ S + + N+ +T T +AN IK+ + + T + + +
Sbjct: 86 ESLKLKMKEYERFFSEFNTSMHANEQEVTNTLNANAENIKSEIKKLENQLIETTTRLLTS 145
Query: 193 ----LSQKHDLNASN---------IQAATTPENKNPLNASDQLALKTTQ---------TP 230
L+Q D NA+N ++A T +N NA+++++ TQ T
Sbjct: 146 YQIFLNQARD-NANNQITKNKTQSLEAITQAKN----NANNEISNNQTQAITNITEAKTN 200
Query: 231 TNHTLAKNDAKNTANLSSVLQSLEKKEPQNKEHANPLNNEKKTPPLKEALE 281
N+ ++ N + N++ +S + NK+ A ++KT E E
Sbjct: 201 ANNEISNNQTQAITNINEAKESATTQINANKQEAINNITQEKTQATSEITE 251
>ref|NP_223532.1| putative [Helicobacter pylori J99]
Length = 117
Score = 26.6 bits (57), Expect = 1.7
Identities = 23/73 (31%), Positives = 33/73 (44%), Gaps = 11/73 (15%)
Query: 102 LKD-WLNHKKTT----TPHETQHETHEANETNPK-TPNETLNKNEKKPNGVTSSVHQTNL 155
LKD W K T +E + E E+ T+P T ETL N KP+ T+++
Sbjct: 25 LKDNWKGEKSPNHWVITGYEKRLEDSESLYTSPPITKGETLPLNSNKPDPTTNAI----- 79
Query: 156 TNKNPITPTNHAN 168
+ P+ P AN
Sbjct: 80 KTQEPLYPLELAN 92
>ref|NP_223415.1| putative [Helicobacter pylori J99]
Length = 529
Score = 26.6 bits (57), Expect = 1.7
Identities = 38/149 (25%), Positives = 61/149 (40%), Gaps = 15/149 (10%)
Query: 345 LEKEEKAKEASDNKEKTKETSNSAQNAQNTQASDKTSD---NKSTAPKETIKHFT-QQLK 400
LEKE+K E + + + Q A +A K D N K+ IK +QL+
Sbjct: 111 LEKEKKELEKERQILEQERENFKKQRAICKEAQAKALDAMLNYMAYTKDEIKSMILEQLE 170
Query: 401 QEIQEYKPPMSRISMDLFPKELGKVE--VIIQKVGKNLKVSVISHNNSLQTFLDNQ---- 454
+E++ K + R + KE GK + I+ + + N + + L
Sbjct: 171 EELEAQKSALIR-RYEKEAKEEGKKKSYAILAEATARFAGDYATENLTSRIALPCSDYVG 229
Query: 455 ----QDLKNSLNALGFEGVDLSFSQDSSK 479
+D KN GVD+ FS+DSS+
Sbjct: 230 RVIGKDGKNIEAFKKISGVDIEFSEDSSE 258
>ref|NP_223219.1| putative [Helicobacter pylori J99]
Length = 321
Score = 26.6 bits (57), Expect = 1.7
Identities = 30/125 (24%), Positives = 47/125 (37%), Gaps = 21/125 (16%)
Query: 259 QNKEHANPLNNEKKTPPLKEALEMNAIKRDKTLSKKKSEKTP---------------IHA 303
+ K+ +P KK PLK L+ + + + +LSKK S+ P I
Sbjct: 113 EQKQETSPEETAKK--PLKVELDYSINQANTSLSKKSSKWKPFVIVLGVVVIILVVVIIQ 170
Query: 304 KTQTTAPSATPENAPKIPLKTPPLMPLIGANPPPNDNI-PTPLEKEEKAKEASDNKEKTK 362
+ + E A K K NP + PTP +E+ ++ KE K
Sbjct: 171 NSSSLKEEREQERAIKPDTKNNSFNE---TNPTEEKKLEPTPKLEEKHKEQDKQGKEAIK 227
Query: 363 ETSNS 367
E N+
Sbjct: 228 ENPNT 232
>ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATED IMMUNODOMINANT ANTIGEN
[Helicobacter pylori J99]
Length = 1167
Score = 26.6 bits (57), Expect = 1.7
Identities = 51/201 (25%), Positives = 78/201 (38%), Gaps = 30/201 (14%)
Query: 5 INPIHTNASANANA-LNS--GAKNED------AKNAPKSASKDFSKILNQKISKDKTAPK 55
INP + N NA LN KN+D AK+ +++ KD I+NQKI+
Sbjct: 735 INPEWISKVENLNAALNEFKNGKNKDFSKVTQAKSDLENSIKDV--IINQKITDKVDNLN 792
Query: 56 ENPNALKTTPQNSK-EGAKEDAKTLEKTPTLPHQHAQNPAKDQQAPTLKDWLNHKKTTTP 114
+ + K T S E A D K K Q AQ K++ T K+ ++
Sbjct: 793 QAVSVAKATGDFSGVEQALADLKNFSK-----EQLAQQAQKNEDFNTGKNSALYQSVKNG 847
Query: 115 HETQHETHEANETNPKTPNETLNKNEKKPNGVTSSVHQTNLTNKNPITPTNHANNAIKNP 174
+ ++ T ++ + +K+ N L N N N+ NN ++N
Sbjct: 848 VNGTLVGNGLSKAEATTLSKNFSDIKKELNA--------KLGNFN-----NNNNNGLENS 894
Query: 175 TAPTDTKKEPKTLKDIQTLSQ 195
T P T+ K I L Q
Sbjct: 895 TEPIYTQVAKKVKAKIDRLDQ 915
Score = 26.6 bits (57), Expect = 1.7
Identities = 51/254 (20%), Positives = 97/254 (38%), Gaps = 16/254 (6%)
Query: 15 NANALNSGAKNEDAKNAPKSASKDFSKIL--NQKISKDKTAPKENPNALKTTPQNSKEGA 72
N N + AKN + K A KD K L +++ KD E+ + K + +
Sbjct: 594 NFNKAVAEAKNTGNYDEVKQAQKDLEKSLKKRERLEKDVAKNLESKSGNKNKMEAKSQAN 653
Query: 73 KEDAKTLEKTPTLPHQHAQNPAKDQQAPTLKDWLNHKKTTTPHETQHETHEANETNPKTP 132
+ + ++ A+ A Q +K L+ K + + + +E
Sbjct: 654 SQKDEIFALINKEANRDARAIAYAQNLKGIKRELSDKLENINKDLKDFSKSFDEFK-NGK 712
Query: 133 NETLNKNEKKPNGVTSSVHQTNLTNK--NPITPTNHANNAIKNP-----TAPTDTKKE-P 184
N+ +K E+ + SV + + + + N A N KN + T K +
Sbjct: 713 NKDFSKAEETLKALKGSVKDLGINPEWISKVENLNAALNEFKNGKNKDFSKVTQAKSDLE 772
Query: 185 KTLKDIQTLSQKHDLNASNIQAATTPENKNPLNASDQLALKTTQTPTNHTLA----KNDA 240
++KD+ ++QK N+ A + + + AL + + LA KN+
Sbjct: 773 NSIKDV-IINQKITDKVDNLNQAVSVAKATGDFSGVEQALADLKNFSKEQLAQQAQKNED 831
Query: 241 KNTANLSSVLQSLE 254
NT S++ QS++
Sbjct: 832 FNTGKNSALYQSVK 845
>ref|NP_223210.1| DNA transfer protein (Agrobacterium VirB4 homolog) [Helicobacter
pylori J99]
Length = 983
Score = 26.6 bits (57), Expect = 1.7
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 420 KELGKVEVIIQKVGKNLKVSVISHNNSLQTFLDNQQDLK-------NSLNALGFEGVDLS 472
KE G + ++ N +++ S+ NSL F D+ + +K +SLNA GF +
Sbjct: 453 KEQGMTLGCLSELVGNGDITLGSYGNSLVLFADSFEKMKQSVKECVSSLNAKGFLANAAT 512
Query: 473 FSQDS 477
FS ++
Sbjct: 513 FSMEN 517
>ref|NP_224184.1| FLAGELLAR BASAL-BODY ROD PROTEIN [Helicobacter pylori J99]
Length = 161
Score = 26.2 bits (56), Expect = 2.2
Identities = 24/87 (27%), Positives = 42/87 (47%), Gaps = 9/87 (10%)
Query: 14 ANANALNSGAKNEDAKNAPKSASKDFSKILNQKISK-DKTAPKENP-------NALKTTP 65
ANAN + + + DF++ILNQKI++ ++ P E+P + T
Sbjct: 28 ANANTTRTSEGGPYRRQEAVFRAFDFNEILNQKIAQNNQIIPYEDPLDEGDDNPLIPITS 87
Query: 66 QNSKEGAKEDAKTLEK-TPTLPHQHAQ 91
+ A++D++ L K P+ P +AQ
Sbjct: 88 VVVDKIARDDSEPLMKYDPSHPDANAQ 114
>ref|NP_223663.1| putative [Helicobacter pylori J99]
Length = 145
Score = 26.2 bits (56), Expect = 2.2
Identities = 15/36 (41%), Positives = 18/36 (49%), Gaps = 2/36 (5%)
Query: 100 PTLKDWLNHKKTTTPHETQHETHEA--NETNPKTPN 133
P++ DW KTTT TQ A NE +P T N
Sbjct: 19 PSITDWSATYKTTTTQTTQPYLRPAQDNEKHPTTYN 54
>ref|NP_222839.1| putative [Helicobacter pylori J99]
Length = 143
Score = 26.2 bits (56), Expect = 2.2
Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 6/94 (6%)
Query: 189 DIQTLSQKHDLN-ASNIQAATTPENKNPLNASDQLALKTTQTPTNHTLAKNDAKNTANLS 247
D +++ K L A + + PE + +N + + + K KN A+LS
Sbjct: 23 DFKSMDNKQLLEQAGKVAPSEVPEFRTEVNKRLEAMKEEERQKYKADFKKAMDKNLASLS 82
Query: 248 SVLQSLEKKEPQNKEHANPLNNEKKTPPLKEALE 281
E + + KE + N+KKT +KE E
Sbjct: 83 Q-----EDRNKRKKEILEVIANKKKTMTMKEYRE 111
>ref|NP_223905.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 849
Score = 25.8 bits (55), Expect = 2.8
Identities = 24/109 (22%), Positives = 48/109 (44%), Gaps = 14/109 (12%)
Query: 348 EEKAKEASDNKEKTKETSNSAQNAQNTQASDKTSDNKSTAPKETIKHFTQQLKQEIQEYK 407
EE+ K+A + E+ + + A ++ + + + ++ APKE + K E++E K
Sbjct: 461 EEERKKALEQAEQGCSIGENKEEAVASKENKEENKTEAAAPKEN----QTENKTEVKEEK 516
Query: 408 PPMSRISMDLFPKELG-------KVEVIIQKVGKNLKV---SVISHNNS 446
+ + L +E G K+ ++QK L V + SH +
Sbjct: 517 IEVPTKTTYLLLEEAGINLETYEKILALLQKSNNTLLVVGEEIYSHKQA 565
Score = 24.6 bits (52), Expect = 6.3
Identities = 17/56 (30%), Positives = 27/56 (47%), Gaps = 4/56 (7%)
Query: 472 SFSQDSSKEQQAPKDQPKEPFKEQELTPLKENALKSYQENTDNENQETSMQITLYA 527
S ++S+KE +A + +P +P KE+ + NA Y E N S + L A
Sbjct: 726 SHFENSAKECEATECEPIKPLKEK----IAFNAYLKYPETQFNNATHKSENLQLKA 777
>ref|NP_223574.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2399
Score = 25.8 bits (55), Expect = 2.8
Identities = 20/65 (30%), Positives = 29/65 (43%), Gaps = 7/65 (10%)
Query: 455 QDLKNSLNALGFEGVDLSFSQDSSKE--QQAPKDQPKEP-----FKEQELTPLKENALKS 507
Q N N LG EG+D F+Q + Q ++ K+ F E L+PL + S
Sbjct: 1402 QATDNIFNLLGQEGIDKIFNQGNLANVLSQMAMEKIKQAGGLGNFIENALSPLSKELPAS 1461
Query: 508 YQENT 512
Q+ T
Sbjct: 1462 LQDET 1466
Score = 24.6 bits (52), Expect = 6.3
Identities = 41/172 (23%), Positives = 66/172 (37%), Gaps = 21/172 (12%)
Query: 338 NDNIPTPLEKEEKAKEASDNKEKTKETSNSAQNAQNTQASDKTSDNKST----APKETIK 393
N +I T ++ ++A ++ + +NS QNA N ASD T N T + TI
Sbjct: 430 NQSIITQFLGDDLQQQAQQTYQE--DVANS-QNALNKVASDNTIANNDTSYTQSSNPTIL 486
Query: 394 HFTQQLKQEIQEYKPPMSRISMDLFP-KELGKVEVIIQKVGKNLKVSVISHNNSLQTFLD 452
Q L+ Q+ + + DL K+L G N + + Q
Sbjct: 487 KDAQGLENTNQQIQQDEKALEKDLAQIKQLAN-----STTGFNEQAFTQAQKQEQQ---- 537
Query: 453 NQQDLKNSLNALGFEGVDLSFSQDSSKEQQAPKDQPKEPFKEQELTPLKENA 504
++Q L+N NA E L + ++K + P TP+K A
Sbjct: 538 DEQALQNDENAFNTEQEGLEQAIANAKHANPTPNPTPSPTP----TPIKHTA 585
Score = 24.3 bits (51), Expect = 8.3
Identities = 16/52 (30%), Positives = 24/52 (45%), Gaps = 5/52 (9%)
Query: 328 MPLIGANPPPNDNIPT-----PLEKEEKAKEASDNKEKTKETSNSAQNAQNT 374
M + A N+NI T PL + +E+ N + T E N+ +A NT
Sbjct: 1100 MKIQNATYSDNNNIQTWSFINPLNSSQIIQESIKNGDLTIEVLNNPNSASNT 1151
>ref|NP_223001.1| putative FLAGELLAR-HOOK ASSOCIATED PROTEIN 3 (HAP3) [Helicobacter
pylori J99]
Length = 828
Score = 25.8 bits (55), Expect = 2.8
Identities = 14/37 (37%), Positives = 18/37 (47%)
Query: 344 PLEKEEKAKEASDNKEKTKETSNSAQNAQNTQASDKT 380
P + ++ NKE K SN AQ AQN A+ T
Sbjct: 492 PTNNASEYQKTYFNKEGAKLESNVAQTAQNDAANGST 528
>ref|NP_223630.1| septum formation protein [Helicobacter pylori J99]
Length = 493
Score = 25.4 bits (54), Expect = 3.7
Identities = 12/32 (37%), Positives = 18/32 (55%)
Query: 151 HQTNLTNKNPITPTNHANNAIKNPTAPTDTKK 182
HQ+N T +PT + +K P+AP +T K
Sbjct: 435 HQSNPTPHIHSSPTERNLSDLKTPSAPLNTAK 466
>ref|NP_223569.1| putative IRON-REGULATED OUTER MEMBRANE PROTEIN [Helicobacter pylori
J99]
Length = 815
Score = 25.4 bits (54), Expect = 3.7
Identities = 22/89 (24%), Positives = 38/89 (41%), Gaps = 11/89 (12%)
Query: 348 EEKAKEASDNKEKTKETSNSAQNAQNTQASDKTSDNKSTAPKETIKHFTQQLKQEIQEYK 407
E +AKE ++KT+ + +NAQ+T K T I ++ Q +E +
Sbjct: 23 ELEAKEEEKEEKKTERNKDKEKNAQHTL-------GKVTTQAAKIFNYNNQTTISSKELE 75
Query: 408 PPMSRISMDLFPK----ELGKVEVIIQKV 432
+ D+F + +G VI QK+
Sbjct: 76 RRQANQISDMFRRNPNINVGGGAVIAQKI 104
>ref|NP_223134.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
pylori J99]
Length = 543
Score = 25.4 bits (54), Expect = 3.7
Identities = 13/49 (26%), Positives = 23/49 (46%)
Query: 271 KKTPPLKEALEMNAIKRDKTLSKKKSEKTPIHAKTQTTAPSATPENAPK 319
+KTP KE + ++A K + ++ K++KT + APK
Sbjct: 421 QKTPSAKEVILIDASKLGEEYTENKNKKTRLRPSDMDLILETFQNKAPK 469
>ref|NP_222998.1| putative [Helicobacter pylori J99]
Length = 290
Score = 25.4 bits (54), Expect = 3.7
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 438 VSVISHNNSLQTFLDNQQ--DLKNSLNALGFEGVDLSFSQDSSKE 480
+ +I+ N +Q+ L+N + DLK L + E V SF + ++E
Sbjct: 178 IGLINENKGIQSVLENYESLDLKGGLIRVNGEIVSFSFGEVLNEE 222
>ref|NP_223624.1| GLYCYL-TRNA SYNTHETASE BETA CHAIN [Helicobacter pylori J99]
Length = 701
Score = 25.0 bits (53), Expect = 4.9
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 172 KNPTAPTDTKKEPKTLKDIQTLSQKHDL 199
KN K+E K L++I+ L +KHD+
Sbjct: 218 KNHVILDPKKREAKILQEIKGLEKKHDI 245
>ref|NP_222841.1| L-SERINE/L-THREONINEDEAMINASE [Helicobacter pylori J99]
Length = 455
Score = 25.0 bits (53), Expect = 4.9
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 458 KNSLNALGFEGVDLSFSQDSSKEQQAPKDQPKEPFKEQELTPLKENALKSYQENT 512
+ L+ L EG + S + D S ++ + K E+ L+ENALK++ + T
Sbjct: 154 EKELDNLSEEGENESVAYDFSSAKELLELCQKHQKSIAEIVRLRENALKNHPDAT 208
>ref|NP_224073.1| putative motility protein [Helicobacter pylori J99]
Length = 195
Score = 24.6 bits (52), Expect = 6.3
Identities = 21/81 (25%), Positives = 40/81 (48%), Gaps = 2/81 (2%)
Query: 415 MDLFPKELGKVEVIIQKVGKNLKVSVISHNNSLQTFLDNQQDLKNSLNALGFEGVDLSFS 474
+ +F K+L + IQKV N +V I + F +++++ +SLN E D +
Sbjct: 22 LKMFDKKLSSNDWHIQKVEMNHQVYDIETMLADSAFREHEEEQDSSLNTALPE--DKTAI 79
Query: 475 QDSSKEQQAPKDQPKEPFKEQ 495
+ +EQ+ + E FK++
Sbjct: 80 EAKEQEQKEKRKHWYELFKKK 100
>ref|NP_224005.1| ROD SHAPE-DETERMINING PROTEIN [Helicobacter pylori J99]
Length = 347
Score = 24.6 bits (52), Expect = 6.3
Identities = 13/52 (25%), Positives = 25/52 (48%)
Query: 361 TKETSNSAQNAQNTQASDKTSDNKSTAPKETIKHFTQQLKQEIQEYKPPMSR 412
T E S Q + + +SD+ A K+ ++ + L+ ++E KP + R
Sbjct: 234 TMEVSGRDQVSGLLHTIELSSDDVFEAIKDQVREISSALRSVLEEVKPDLVR 285
>ref|NP_223659.1| putative [Helicobacter pylori J99]
Length = 677
Score = 24.6 bits (52), Expect = 6.3
Identities = 22/100 (22%), Positives = 41/100 (41%), Gaps = 9/100 (9%)
Query: 179 DTKKEPKTLKDIQTLSQKHDLNASNIQAATTPENKNPLNASDQLALKTTQTPTNHTLAK- 237
D +KE K L+ I++ + DLN + +Q E K+ A TP ++K
Sbjct: 243 DLEKEEKALEQIKSPQDEWDLNKA-LQKEYLQELKDKNKAKALDIQNNHSTPLKQKISKF 301
Query: 238 -------NDAKNTANLSSVLQSLEKKEPQNKEHANPLNNE 270
D + S + ++K++P ++ N +E
Sbjct: 302 KIALFNHKDTSDDEKESLSIDRIDKRKPVSEHLKNMSKHE 341
>ref|NP_223565.1| putative ATP-DEPENDENT HELICASE [Helicobacter pylori J99]
Length = 676
Score = 24.6 bits (52), Expect = 6.3
Identities = 27/132 (20%), Positives = 51/132 (38%), Gaps = 5/132 (3%)
Query: 151 HQTNLTNKNPITPTNHANNAIKNPTAPTDTKKEPKTLKDIQTLSQKHDLNASNIQAATTP 210
H NL+ K P + + A TD K+P T + + L + +
Sbjct: 96 HYPNLSLKQPKELRKLLESIVDTKNALTDEDKKPYTSQHLYALYSLYTNALKQEDFSAWL 155
Query: 211 ENKNPLNASDQLALKTTQTPTNHTLAKNDAKNTANLSSVLQS--LEKKEPQNKEHANPLN 268
+KNP +A + +T K+D + +L + + LE+ P + +
Sbjct: 156 SSKNPEHAPYAAFYENILEEFENTKKKHDYIDYNDLLLLFKKAMLERSSPYKEVLCDEFQ 215
Query: 269 NEKKTPPLKEAL 280
+ T PL+E++
Sbjct: 216 D---TNPLQESI 224
>ref|NP_223498.1| putative [Helicobacter pylori J99]
Length = 245
Score = 24.6 bits (52), Expect = 6.3
Identities = 18/41 (43%), Positives = 19/41 (45%), Gaps = 10/41 (24%)
Query: 55 KENPNALKTTPQNSKEGAKEDAKTL----------EKTPTL 85
KE LKTT Q +KE KE TL EKTP L
Sbjct: 193 KEKQLFLKTTLQRTKEVLKEAQNTLLGFSFVEIVCEKTPML 233
>ref|NP_223497.1| PANTOTHENATE METABOLISM FLAVOPROTEIN [Helicobacter pylori J99]
Length = 425
Score = 24.6 bits (52), Expect = 6.3
Identities = 43/180 (23%), Positives = 68/180 (36%), Gaps = 21/180 (11%)
Query: 340 NIPTPLEKEEKAKEASDNKEKTKETSNSAQNAQNTQASDKTSDNKSTA---PKETIKH-- 394
N PTPL KE + SD + +A+N Q + + + PK + H
Sbjct: 253 NFPTPLPKEIASVLVSDTASYENALNEAAKNLQKHALKPLLFNLAAISDYLPKTSFNHKL 312
Query: 395 ----FTQQLKQEIQEYKPPMSRISMDLFPKELGKVEVIIQKVGKNLKVSVISHNNSLQTF 450
+ L E + K ++ ++ + F K K E Q KN + N L+
Sbjct: 313 KKSELGETLNVECVQNKDLLASVNPNQFVKIGFKAEDDQQNAIKNAQ-------NLLKPS 365
Query: 451 LDNQQDLK-NSLNAL----GFEGVDLSFSQDSSKEQQAPKDQPKEPFKEQELTPLKENAL 505
DN +D +LN + F +D S K+ Q K + L +K+NAL
Sbjct: 366 QDNGKDCSVAALNLIKDSRPFGSLDNELWLFSHKKTQKIPSMNKLEASFKILDFIKDNAL 425
>ref|NP_222835.1| TRANSLATION INITIATION FACTOR IF-3 [Helicobacter pylori J99]
Length = 203
Score = 24.6 bits (52), Expect = 6.3
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 350 KAKEASDNKEKTKETSNSAQNAQNTQASDKTSDNK 384
KAKEA N++KTKE +N N N + + N+
Sbjct: 169 KAKEAPKNEKKTKE-NNPPFNRINLMKGENHAKNE 202
>ref|NP_224131.1| putative [Helicobacter pylori J99]
Length = 115
Score = 24.3 bits (51), Expect = 8.3
Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 25/116 (21%)
Query: 347 KEEKAKEASDNKEKTKETSNSAQNAQNTQASDKTSDNKSTAPKETIKHFTQQLKQEIQEY 406
K+E K + ++ TK T N N+ P + IK K E +E
Sbjct: 22 KDEPKKSSQSHQNNTKTTQN----------------NQINQPNKDIK------KIEHEEE 59
Query: 407 KPPMSRISMDLFPKELGKVEVIIQKVGKNLKVSVISHNNSLQTFLDNQQDLKNSLN 462
+++ DL E K++ I + +N S NN LQ ++Q +L + LN
Sbjct: 60 DEKVTKEVNDLINNE-NKIDEINNE--ENADPSQKRTNNVLQRATNHQDNLSSPLN 112
>ref|NP_223797.1| VALYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 872
Score = 24.3 bits (51), Expect = 8.3
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 45 QKISKDKTAPK-ENPNALKTTPQNSKEGAKEDAKTL 79
+K+ K+K N N +K P++ E A+E KTL
Sbjct: 820 EKLEKEKLKLNLHNENFVKNAPKSVLEKARESLKTL 855
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.299 0.118 0.316
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 624,333
Number of Sequences: 1491
Number of extensions: 33233
Number of successful extensions: 268
Number of sequences better than 10.0: 73
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 115
Number of HSP's gapped (non-prelim): 145
length of query: 527
length of database: 494,079
effective HSP length: 82
effective length of query: 445
effective length of database: 371,817
effective search space: 165458565
effective search space used: 165458565
T: 11
A: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.7 bits)
S2: 51 (24.3 bits)