BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645525|ref|NP_207701.1| hypothetical protein
[Helicobacter pylori 26695]
(201 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223563.1| putative [Helicobacter pylori J99] 351 9e-99
ref|NP_224171.1| putative [Helicobacter pylori J99] 30 0.059
ref|NP_222770.1| Proline/pyrroline-5-carboxylate dehydrogen... 29 0.10
ref|NP_223887.1| RIBONUCLEASE II FAMILY PROTEIN [Helicobact... 27 0.29
ref|NP_223191.1| cag island protein, DNA transfer protein [... 26 0.65
ref|NP_223562.1| putative FLAGELLAR BASAL-BODY/ROD/HOOKPROT... 26 0.85
ref|NP_223068.1| putative [Helicobacter pylori J99] 24 2.5
ref|NP_222758.1| DNA transformation compentancy [Helicobact... 24 2.5
ref|NP_223744.1| GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE [Helic... 24 3.2
ref|NP_223242.1| METHYLENETETRAHYDROFOLATE DEHYDROGENASE/ME... 23 5.5
ref|NP_223535.1| putative [Helicobacter pylori J99] 23 7.2
ref|NP_223394.1| putative [Helicobacter pylori J99] 23 7.2
ref|NP_223231.1| DIAMINOPIMELATE EPIMERASE [Helicobacter py... 23 7.2
ref|NP_223790.1| putative [Helicobacter pylori J99] 22 9.4
ref|NP_223232.1| putative Inner membrane protein [Helicobac... 22 9.4
>ref|NP_223563.1| putative [Helicobacter pylori J99]
Length = 193
Score = 351 bits (900), Expect = 9e-99
Identities = 168/189 (88%), Positives = 178/189 (93%), Gaps = 2/189 (1%)
Query: 1 MIPTQLNEIAEFLKTNPYNLSQPLQDGRLNSSVNEEEILNIIKDYFPIQLPKAREWWDFS 60
M+PTQLNEIAEFLKTNPYNLSQPLQDGRLNSSVNEEEILN IKDYFPIQLP+ REWWDFS
Sbjct: 1 MVPTQLNEIAEFLKTNPYNLSQPLQDGRLNSSVNEEEILNTIKDYFPIQLPRVREWWDFS 60
Query: 61 FKKNDIFYPVNI--TTTKTADNLNGKLGIYYALCGLLPTFNNEIAWEKYFQKLHKDLGKN 118
F++N IFYPVNI TTTKTADNLNGKLGIYYALCGL+P FNNEIAWEKYFQKLHKDLG N
Sbjct: 61 FEENKIFYPVNIKTTTTKTADNLNGKLGIYYALCGLVPEFNNEIAWEKYFQKLHKDLGTN 120
Query: 119 TNRDYYFLIISKNDPKDVFINSLKGIQTLQPNNLPFQCKWDNNREIIQRDFDGSKNSILS 178
TNRDYYFLII+KNDPKD+FINSLKGIQTLQPNNLPFQCKWDNNR+I+QR F SKN ILS
Sbjct: 121 TNRDYYFLIINKNDPKDIFINSLKGIQTLQPNNLPFQCKWDNNRKIVQRSFIESKNFILS 180
Query: 179 ALAKSVELR 187
ALAKSV+LR
Sbjct: 181 ALAKSVKLR 189
>ref|NP_224171.1| putative [Helicobacter pylori J99]
Length = 170
Score = 29.6 bits (65), Expect = 0.059
Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 10/69 (14%)
Query: 71 NITTTKTADNLNGKLGIYYALCGLLPTFNNEIAWEKYFQKLHKDLGKNTNRDYYFLIISK 130
N+T T N G Y A + T++N+ +K FQ N YY ++
Sbjct: 82 NVTDTSITQNKEGFTTFYRATVSVNYTYDNKRGTQKTFQ----------NSGYYNYAVNL 131
Query: 131 NDPKDVFIN 139
DP + F N
Sbjct: 132 QDPLNTFQN 140
>ref|NP_222770.1| Proline/pyrroline-5-carboxylate dehydrogenase [Helicobacter pylori
J99]
Length = 1185
Score = 28.9 bits (63), Expect = 0.10
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 15/72 (20%)
Query: 84 KLGIYYALCGLLPTFNNEIAWEKYFQKLHKDLGKNTNRD-----YYFLIISKNDPKDV-- 136
KL +Y +C FNN IA+ L + L +NT+ D ++ L + ++ KD
Sbjct: 387 KLILYAPVCDEAH-FNNAIAY------LVRRLDENTSSDNFMKAFFNLKVGTSEWKDQEQ 439
Query: 137 -FINSLKGIQTL 147
F+NSLKGI TL
Sbjct: 440 RFLNSLKGIATL 451
>ref|NP_223887.1| RIBONUCLEASE II FAMILY PROTEIN [Helicobacter pylori J99]
Length = 644
Score = 27.3 bits (59), Expect = 0.29
Identities = 23/95 (24%), Positives = 41/95 (42%), Gaps = 3/95 (3%)
Query: 105 EKYFQKLHKDLGK--NTNRDYYFLIISKNDPKDVFINSL-KGIQTLQPNNLPFQCKWDNN 161
++Y K D+GK +F+ ++KN PKD I +L +T +C
Sbjct: 37 DRYLLKEGFDIGKIERVKNKAFFISLAKNYPKDPLIKNLPPSFKTDALILCQIECSKKRP 96
Query: 162 REIIQRDFDGSKNSILSALAKSVELRVYLAFKEVF 196
+ + +++++ LAK V + FKE F
Sbjct: 97 IAFFKAALLNADHAMIAYLAKEKNQIVAIPFKEPF 131
>ref|NP_223191.1| cag island protein, DNA transfer protein [Helicobacter pylori J99]
Length = 748
Score = 26.2 bits (56), Expect = 0.65
Identities = 18/44 (40%), Positives = 26/44 (58%), Gaps = 10/44 (22%)
Query: 79 DNLNGKLGIYYALCGLLPTFNNEIAWEKYFQKLHKDLGKNTNRD 122
DNL+ L +YY + NN+ +E +F+KL K LGK T +D
Sbjct: 603 DNLS--LNMYYGI-------NNDNYYE-HFEKLSKVLGKYTRQD 636
>ref|NP_223562.1| putative FLAGELLAR BASAL-BODY/ROD/HOOKPROTEIN [Helicobacter pylori
J99]
Length = 605
Score = 25.8 bits (55), Expect = 0.85
Identities = 34/131 (25%), Positives = 57/131 (42%), Gaps = 30/131 (22%)
Query: 24 LQDGRLNSSVNEEEILNIIKDYF-PIQLPKAREWWDFSFKKNDIFYPVNITTTKTADNLN 82
++DG LNS+ +E+I + + P+Q+P+ D +++ PV T + NLN
Sbjct: 152 IKDGTLNSTARDEDIEKLHGNTLSPLQIPQ-----DLTYQ------PVLSTKVNISVNLN 200
Query: 83 GKLGIYYALCGLLPTFNN---EIAWEKYFQKLHKDLGKNTNRDYYFLIISKNDPKDVFIN 139
K L G+ F N EI E++ L++D+ N D N+P D N
Sbjct: 201 PK----DHLKGVQDFFLNDKGEIIKERF---LNQDINALANDD--------NEPIDAITN 245
Query: 140 SLKGIQTLQPN 150
+ + N
Sbjct: 246 RKLNVSIQKEN 256
>ref|NP_223068.1| putative [Helicobacter pylori J99]
Length = 173
Score = 24.3 bits (51), Expect = 2.5
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 1 MIPTQLNEIAEFLKTNPYNLSQPLQDGRLNSSVNEEEILNII 42
+I +L EI E N L+ PL D +LN ++N+E I+
Sbjct: 74 IIKQELREIVE----NCQFLASPLFDTQLNIAINDEVFSMIV 111
>ref|NP_222758.1| DNA transformation compentancy [Helicobacter pylori J99]
Length = 376
Score = 24.3 bits (51), Expect = 2.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 29 LNSSVNEEEILNIIKDYFPIQL 50
LN+ N+EE+ N DY +QL
Sbjct: 297 LNNRGNKEEVTNFFGDYLLLQL 318
>ref|NP_223744.1| GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE [Helicobacter pylori J99]
Length = 425
Score = 23.9 bits (50), Expect = 3.2
Identities = 15/63 (23%), Positives = 31/63 (48%), Gaps = 9/63 (14%)
Query: 131 NDPKDVFINSLKGIQTLQPNNLPFQCKWDNNREIIQRDFDGSKNSILSALAKSVELRVYL 190
ND KD+ +K ++TLQP D +++I+ + G ++ + + K + ++
Sbjct: 239 NDLKDLRQEKIKVLKTLQPPK-------DFTKQVIRAQYQGYRDE--NKVHKESQTETFV 289
Query: 191 AFK 193
A K
Sbjct: 290 AIK 292
>ref|NP_223242.1| METHYLENETETRAHYDROFOLATE DEHYDROGENASE/METHENYLTETRAHYDROFOLATE
CYCLOHYDROLASE [Helicobacter pylori J99]
Length = 290
Score = 23.1 bits (48), Expect = 5.5
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 29 LNSSVNEEEILNIIKDY 45
L ++ E E+L++IKDY
Sbjct: 73 LKENITEAELLSLIKDY 89
>ref|NP_223535.1| putative [Helicobacter pylori J99]
Length = 460
Score = 22.7 bits (47), Expect = 7.2
Identities = 13/34 (38%), Positives = 17/34 (49%)
Query: 104 WEKYFQKLHKDLGKNTNRDYYFLIISKNDPKDVF 137
W+ F+ L KNTN+ Y L +K D K F
Sbjct: 180 WDLLFKGLLGFKTKNTNKKEYRLNRAKKDLKAFF 213
>ref|NP_223394.1| putative [Helicobacter pylori J99]
Length = 241
Score = 22.7 bits (47), Expect = 7.2
Identities = 13/36 (36%), Positives = 18/36 (49%)
Query: 136 VFINSLKGIQTLQPNNLPFQCKWDNNREIIQRDFDG 171
VF S I P N F W +++EI+Q+ F G
Sbjct: 12 VFDISYTFIDHHSPLNALFLHGWGSSKEIMQQAFQG 47
>ref|NP_223231.1| DIAMINOPIMELATE EPIMERASE [Helicobacter pylori J99]
Length = 273
Score = 22.7 bits (47), Expect = 7.2
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 50 LPKAREWWDFSFKKNDIFY 68
+PK+ E+ + S K + IFY
Sbjct: 233 IPKSNEFLELSLKNDGIFY 251
>ref|NP_223790.1| putative [Helicobacter pylori J99]
Length = 285
Score = 22.3 bits (46), Expect = 9.4
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 155 QCKWDNNREIIQRDFDGSKNSILSALAKSVELR 187
+ W+ E+ + S NS+ S L KS +R
Sbjct: 212 EAAWEKGFEVFIANIQESPNSVPSDLKKSCNVR 244
>ref|NP_223232.1| putative Inner membrane protein [Helicobacter pylori J99]
Length = 349
Score = 22.3 bits (46), Expect = 9.4
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 85 LGIYYALCGLLPTFNNEIAW 104
LGI Y L L+P + W
Sbjct: 224 LGILYGLASLVPAVGGALIW 243
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.319 0.139 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 244,959
Number of Sequences: 1491
Number of extensions: 12500
Number of successful extensions: 39
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 27
Number of HSP's gapped (non-prelim): 15
length of query: 201
length of database: 494,079
effective HSP length: 73
effective length of query: 128
effective length of database: 385,236
effective search space: 49310208
effective search space used: 49310208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)