BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645534|ref|NP_207710.1| hypothetical protein
[Helicobacter pylori 26695]
(143 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223570.1| putative [Helicobacter pylori J99] 261 5e-72
ref|NP_222812.1| methyl-accepting chemotaxis protein (MCP) ... 25 0.83
ref|NP_223339.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 ALP... 24 1.4
ref|NP_223640.1| Component of conjugal plasmid transfer sys... 24 1.9
ref|NP_223136.1| putative [Helicobacter pylori J99] 24 1.9
ref|NP_222817.1| 2',3'-CYCLIC-NUCLEOTIDE 2'-PHOSPHODIESTERA... 24 1.9
ref|NP_223573.1| GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE [... 23 3.2
ref|NP_223518.1| TRANSCRIPTION ELONGATION FACTOR (TRANSCRIP... 23 3.2
ref|NP_223479.1| HOMOSERINE DEHYDROGENASE [Helicobacter pyl... 23 3.2
ref|NP_223541.1| putative [Helicobacter pylori J99] 22 9.2
ref|NP_223331.1| putative [Helicobacter pylori J99] 22 9.2
>ref|NP_223570.1| putative [Helicobacter pylori J99]
Length = 143
Score = 261 bits (667), Expect = 5e-72
Identities = 132/143 (92%), Positives = 138/143 (96%)
Query: 1 MALVYLVQSDTTIGLLSKDSEKLNALKGRPKNQSVLIESADFSTLKSLVRAPNAFKNLIR 60
MALVYL QSDTTIGLLSKDSEKLNALKGRPKNQSVLIES DF+TLKSLVRAPNAFKNL+R
Sbjct: 1 MALVYLAQSDTTIGLLSKDSEKLNALKGRPKNQSVLIESTDFTTLKSLVRAPNAFKNLVR 60
Query: 61 RSAKTTFIYPNSKAVRVIRGRHGDFLNRFKTLYSTSANLTQCAYDKEIASNLADVIVSDE 120
RSAKTTFIYPNSKAVRV++GRHGDFL RFKTLYSTSANLTQCAYDKEIASNLADVIVSDE
Sbjct: 61 RSAKTTFIYPNSKAVRVVKGRHGDFLKRFKTLYSTSANLTQCAYDKEIASNLADVIVSDE 120
Query: 121 RGLFESSSSKIFRLYKDKKVRIR 143
RGLFES SSKIF+LYK KKVR+R
Sbjct: 121 RGLFESGSSKIFKLYKHKKVRVR 143
>ref|NP_222812.1| methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
Length = 675
Score = 25.0 bits (53), Expect = 0.83
Identities = 16/43 (37%), Positives = 22/43 (50%), Gaps = 6/43 (13%)
Query: 87 NRFKTLYSTSANLTQCAYDKEIASNLADVIVSDERGLFESSSS 129
N K L + SANL +C + E ASN S + L E+S +
Sbjct: 486 NFAKDLANDSANLKECVQNLEKASN------SQHKSLMETSKT 522
>ref|NP_223339.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 ALPHA CHAIN [Helicobacter
pylori J99]
Length = 788
Score = 24.3 bits (51), Expect = 1.4
Identities = 18/56 (32%), Positives = 28/56 (49%), Gaps = 4/56 (7%)
Query: 52 PNAFKNLIRRSAKTTFIYPNSKAVRV-IRGRHGDFLNRF---KTLYSTSANLTQCA 103
PNA +IR S T I+ N+ ++ + D F K L +T +N+T+CA
Sbjct: 413 PNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKELVTTDSNITKCA 468
>ref|NP_223640.1| Component of conjugal plasmid transfer system [Helicobacter pylori
J99]
Length = 511
Score = 23.9 bits (50), Expect = 1.9
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 51 APNAFKNLIRRSAKTTFIYPNSKAVRVIRGRHGDF 85
A N K +R + TTFI+ N + V G DF
Sbjct: 95 AGNTNKIRLRYAMTTTFIFDNDPIIYVSLGDPSDF 129
>ref|NP_223136.1| putative [Helicobacter pylori J99]
Length = 255
Score = 23.9 bits (50), Expect = 1.9
Identities = 15/59 (25%), Positives = 28/59 (47%)
Query: 4 VYLVQSDTTIGLLSKDSEKLNALKGRPKNQSVLIESADFSTLKSLVRAPNAFKNLIRRS 62
++ +Q+ TT+ L K + L+A N + DF +LK + A +N ++ S
Sbjct: 197 LFEIQTHTTMQDLEKKALDLSAPYYHKMNDNKRYSEQDFISLKKIALASQLLENDLKDS 255
>ref|NP_222817.1| 2',3'-CYCLIC-NUCLEOTIDE 2'-PHOSPHODIESTERASE [Helicobacter pylori
J99]
Length = 581
Score = 23.9 bits (50), Expect = 1.9
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 12/73 (16%)
Query: 27 KGRPKNQSV-LIESADF-----------STLKSLVRAPNAFKNLIRRSAKTTFIYPNSKA 74
K R +N++V LI+S D + LVRA N K IR F +
Sbjct: 60 KQRAENKNVVLIDSGDLLQGNSAELFNDEPIHPLVRAENDLKFDIRVLGNHEFNFSKDFL 119
Query: 75 VRVIRGRHGDFLN 87
+ I+G +GD +N
Sbjct: 120 EKNIKGFNGDVVN 132
>ref|NP_223573.1| GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE [Helicobacter pylori
J99]
Length = 332
Score = 23.1 bits (48), Expect = 3.2
Identities = 9/17 (52%), Positives = 14/17 (81%)
Query: 3 LVYLVQSDTTIGLLSKD 19
L YL++ D+T GLL+K+
Sbjct: 43 LAYLLEHDSTHGLLNKE 59
>ref|NP_223518.1| TRANSCRIPTION ELONGATION FACTOR (TRANSCRIPT CLEAVAGE FACTOR)
[Helicobacter pylori J99]
Length = 164
Score = 23.1 bits (48), Expect = 3.2
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 3 LVYLVQSDTTIGLLSKDSEKLNALKGRPKNQSVLIE----SADFSTL 45
+V V+SD GL+S S +L G+ K +V I+ +DF L
Sbjct: 106 IVGSVESDPAKGLISFGSPIAKSLIGKSKGDAVSIQLPNGESDFEIL 152
>ref|NP_223479.1| HOMOSERINE DEHYDROGENASE [Helicobacter pylori J99]
Length = 421
Score = 23.1 bits (48), Expect = 3.2
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 7/29 (24%)
Query: 101 QCAYDKEIASNLADVIVSDERGLFESSSS 129
QCAY A ++VSDE+G+F S+
Sbjct: 339 QCAY-------YARLLVSDEKGVFSQISA 360
>ref|NP_223541.1| putative [Helicobacter pylori J99]
Length = 271
Score = 21.6 bits (44), Expect = 9.2
Identities = 12/40 (30%), Positives = 17/40 (42%)
Query: 86 LNRFKTLYSTSANLTQCAYDKEIASNLADVIVSDERGLFE 125
LN+ +Y+ S + T C D+ VSD L E
Sbjct: 20 LNQGYKVYALSRHATLCVALNHALCECVDIDVSDSNALKE 59
>ref|NP_223331.1| putative [Helicobacter pylori J99]
Length = 1167
Score = 21.6 bits (44), Expect = 9.2
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 56 KNLIRRSAKTTFIYPNSKAVRVI 78
KNLI R ++ I+P+ A V+
Sbjct: 906 KNLINRQSQLPKIFPDKSARNVV 928
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.318 0.132 0.353
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 127,851
Number of Sequences: 1491
Number of extensions: 4739
Number of successful extensions: 17
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 11
length of query: 143
length of database: 494,079
effective HSP length: 70
effective length of query: 73
effective length of database: 389,709
effective search space: 28448757
effective search space used: 28448757
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 44 (21.6 bits)