BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644723|ref|NP_206893.1| hypothetical protein
[Helicobacter pylori 26695]
(146 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222807.1| putative ALPHA(1,2)FUCOSYLTRANSFERASE [Hel... 299 2e-83
ref|NP_222898.1| Fumarate reductase [Helicobacter pylori J99] 25 0.87
ref|NP_223502.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUB... 25 1.1
ref|NP_223221.1| putative [Helicobacter pylori J99] 22 5.6
ref|NP_223148.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 22 5.6
ref|NP_224147.1| ZINC-DEPENDENT ALCOHOL DEHYDROGENASE [Heli... 22 7.4
ref|NP_224007.1| UDP-N-ACETYLGLUCOSAMINE ACYLTRANSFERASE [H... 22 9.6
ref|NP_223992.1| QUINOLINATE SYNTHETASE [Helicobacter pylor... 22 9.6
ref|NP_223621.1| putative cation efflux system protein [Hel... 22 9.6
>ref|NP_222807.1| putative ALPHA(1,2)FUCOSYLTRANSFERASE [Helicobacter pylori J99]
Length = 299
Score = 299 bits (765), Expect = 2e-83
Identities = 138/146 (94%), Positives = 143/146 (97%)
Query: 1 MILAAKNSVFVHIRRGDYVGIGCQLGIDYQKKALEYMAKRVPNMELFVFCEDLEFTQNLD 60
+ILAAKNSVF HIRRGDYVGIGCQLGIDYQKKA+EYMAKRVPNMELFVFCEDL+FTQNLD
Sbjct: 154 LILAAKNSVFAHIRRGDYVGIGCQLGIDYQKKAVEYMAKRVPNMELFVFCEDLKFTQNLD 213
Query: 61 LGYPFMDMTTRDKEEEAYWDMLLMQSCQHGIIANSTYSWWAAYLIENPEKIIIGPKHWLF 120
LGYPFMDMTTRDK+EEAYWDMLLMQSC+HGIIANSTYSWWAAYLI NP KIIIGPKHWLF
Sbjct: 214 LGYPFMDMTTRDKDEEAYWDMLLMQSCKHGIIANSTYSWWAAYLINNPGKIIIGPKHWLF 273
Query: 121 GHENILCKEWVKIESHFEVKSQKYNA 146
GHENILCKEWVKIESHFEVKSQKYNA
Sbjct: 274 GHENILCKEWVKIESHFEVKSQKYNA 299
>ref|NP_222898.1| Fumarate reductase [Helicobacter pylori J99]
Length = 245
Score = 25.0 bits (53), Expect = 0.87
Identities = 11/32 (34%), Positives = 17/32 (52%)
Query: 35 EYMAKRVPNMELFVFCEDLEFTQNLDLGYPFM 66
EY K P+M LF+ + Q+ DL + F+
Sbjct: 28 EYQLKETPSMTLFIALNLIREHQDPDLSFDFV 59
>ref|NP_223502.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUBUNIT) [Helicobacter
pylori J99]
Length = 875
Score = 24.6 bits (52), Expect = 1.1
Identities = 18/70 (25%), Positives = 31/70 (43%), Gaps = 9/70 (12%)
Query: 24 QLGIDYQKKALEYMAKRVPNMELF--------VFCEDLEFTQNLDLGYPFMDMTTRDKEE 75
++ IDY +E AK P++E+ + +E DL F+D +D+E
Sbjct: 711 EVNIDYILTLIEKYAKE-PDLEIQGVKTQIEPILNSSIELRNKKDLIMGFIDKYNKDEEV 769
Query: 76 EAYWDMLLMQ 85
AY+ + Q
Sbjct: 770 HAYFQNYIHQ 779
>ref|NP_223221.1| putative [Helicobacter pylori J99]
Length = 145
Score = 22.3 bits (46), Expect = 5.6
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 98 SWWAAYLIENPEKIIIG 114
+WWA + IE +++G
Sbjct: 112 NWWAVFFIEAGADLLVG 128
>ref|NP_223148.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 545
Score = 22.3 bits (46), Expect = 5.6
Identities = 12/39 (30%), Positives = 18/39 (45%)
Query: 49 FCEDLEFTQNLDLGYPFMDMTTRDKEEEAYWDMLLMQSC 87
F + Q+LD F + +E AY +LL +SC
Sbjct: 224 FKQQFNLHQSLDSASLFFMASLNCLKENAYLGLLLPESC 262
>ref|NP_224147.1| ZINC-DEPENDENT ALCOHOL DEHYDROGENASE [Helicobacter pylori J99]
Length = 365
Score = 21.9 bits (45), Expect = 7.4
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 2 ILAAKNSVFVHIRRGDYVGIGCQL 25
+++A S + GD+ G+GC +
Sbjct: 78 VVSAVGSKVTKFKVGDHAGVGCMV 101
>ref|NP_224007.1| UDP-N-ACETYLGLUCOSAMINE ACYLTRANSFERASE [Helicobacter pylori J99]
Length = 270
Score = 21.6 bits (44), Expect = 9.6
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 2 ILAAKNSVFVHIRRGDYVGIG 22
ILA ++ HI GDYV IG
Sbjct: 130 ILANGVTLAGHIEIGDYVNIG 150
>ref|NP_223992.1| QUINOLINATE SYNTHETASE [Helicobacter pylori J99]
Length = 336
Score = 21.6 bits (44), Expect = 9.6
Identities = 10/38 (26%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 76 EAYWDMLLM--QSCQHGIIANSTYSWWAAYLIENPEKI 111
+ Y D+L+ C+ +++N+ +S + +IE EK+
Sbjct: 214 QKYPDILIAVHPECEPSVVSNADFSGSTSQIIEFVEKL 251
>ref|NP_223621.1| putative cation efflux system protein [Helicobacter pylori J99]
Length = 1019
Score = 21.6 bits (44), Expect = 9.6
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 94 NSTYSWWAAYLIENPEKIIIG 114
N Y+ + + NP+K+I+G
Sbjct: 506 NRIYAPLLEFFVHNPKKVILG 526
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.323 0.139 0.446
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 154,971
Number of Sequences: 1491
Number of extensions: 6355
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 9
length of query: 146
length of database: 494,079
effective HSP length: 70
effective length of query: 76
effective length of database: 389,709
effective search space: 29617884
effective search space used: 29617884
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 44 (21.6 bits)