BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645538|ref|NP_207714.1| toxin-like outer membrane
protein [Helicobacter pylori 26695]
(2529 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223574.1| putative vacuolating cytotoxin (VacA) para... 3959 0.0
ref|NP_223274.1| putative vacuolating cytotoxin (VacA) para... 1654 0.0
ref|NP_222995.1| putative vacuolating cytotoxin (VacA) para... 1249 0.0
ref|NP_223537.1| vacuolating cytotoxin [Helicobacter pylori... 198 1e-51
ref|NP_223801.1| putative Outer membrane protein [Helicobac... 69 1e-12
ref|NP_222772.1| putative [Helicobacter pylori J99] 51 4e-07
ref|NP_223025.1| putative [Helicobacter pylori J99] 47 6e-06
ref|NP_222774.1| putative [Helicobacter pylori J99] 46 1e-05
ref|NP_223770.1| putative [Helicobacter pylori J99] 45 2e-05
ref|NP_223194.1| cag island protein [Helicobacter pylori J99] 45 2e-05
ref|NP_223979.1| putative Outer membrane protein [Helicobac... 42 2e-04
ref|NP_222933.1| putative Outer membrane protein [Helicobac... 42 2e-04
ref|NP_222831.1| putative [Helicobacter pylori J99] 42 3e-04
ref|NP_224039.1| putative histidine and glutamine-rich meta... 41 4e-04
ref|NP_223662.1| putative [Helicobacter pylori J99] 40 6e-04
ref|NP_223195.1| cag island protein [Helicobacter pylori J99] 40 6e-04
ref|NP_223567.1| Outer membrane protein/porin [Helicobacter... 40 0.001
ref|NP_223830.1| putative [Helicobacter pylori J99] 39 0.002
ref|NP_223759.1| putative [Helicobacter pylori J99] 38 0.004
ref|NP_223645.1| putative [Helicobacter pylori J99] 38 0.004
ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helico... 38 0.004
ref|NP_223761.1| putative [Helicobacter pylori J99] 36 0.011
ref|NP_223176.1| putative [Helicobacter pylori J99] 36 0.011
ref|NP_224090.1| putative [Helicobacter pylori J99] 36 0.014
ref|NP_223739.1| putative Outer membrane protein [Helicobac... 35 0.032
ref|NP_223655.1| putative [Helicobacter pylori J99] 34 0.054
ref|NP_223108.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [H... 34 0.054
ref|NP_222743.1| putative Outer membrane protein [Helicobac... 34 0.054
ref|NP_223800.1| putative Outer membrane protein [Helicobac... 33 0.071
ref|NP_223773.1| putative [Helicobacter pylori J99] 33 0.071
ref|NP_223380.1| putative Outer membrane protein [Helicobac... 33 0.071
ref|NP_223706.1| histidine kinase [Helicobacter pylori J99] 33 0.093
ref|NP_223610.1| putative [Helicobacter pylori J99] 33 0.093
ref|NP_222962.1| putative [Helicobacter pylori J99] 33 0.093
ref|NP_222822.1| 70kDa chaperone [Helicobacter pylori J99] 33 0.093
ref|NP_223642.1| putative [Helicobacter pylori J99] 32 0.16
ref|NP_223889.1| putative [Helicobacter pylori J99] 32 0.21
ref|NP_223158.1| putative [Helicobacter pylori J99] 32 0.27
ref|NP_223882.1| outer membrane protein - adhesin [Helicoba... 31 0.35
ref|NP_223407.1| putative FLAGELLAR HOOK-ASSOCIATED PROTEIN... 31 0.35
ref|NP_222796.1| putative [Helicobacter pylori J99] 31 0.35
ref|NP_222729.1| putative Outer membrane protein [Helicobac... 31 0.35
ref|NP_222935.1| Outer membrane protein/porin [Helicobacter... 31 0.46
ref|NP_222886.1| putative [Helicobacter pylori J99] 31 0.46
ref|NP_223377.1| putative Outer membrane protein [Helicobac... 30 0.60
ref|NP_222739.1| putative chemotaxis protein [Helicobacter ... 30 0.60
ref|NP_224064.1| putative Outer membrane protein [Helicobac... 30 0.79
ref|NP_223697.1| 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYL TRANSFER... 30 0.79
ref|NP_223560.1| putative [Helicobacter pylori J99] 30 0.79
ref|NP_223551.1| outer membrane protein - adhesin [Helicoba... 30 0.79
ref|NP_223515.1| putative [Helicobacter pylori J99] 30 0.79
ref|NP_223266.1| FLAGELLIN A [Helicobacter pylori J99] 30 0.79
ref|NP_223247.1| putative SIDEROPHORE-MEDIATED IRON TRANSPO... 30 0.79
ref|NP_223054.1| septum formation protein [Helicobacter pyl... 30 0.79
ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (... 30 1.0
ref|NP_223782.1| ATP synthase B' [Helicobacter pylori J99] 30 1.0
ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATE... 30 1.0
ref|NP_223981.1| MAGNESIUM AND COBALT TRANSPORT PROTEIN [He... 29 1.3
ref|NP_223788.1| putative [Helicobacter pylori J99] 29 1.3
ref|NP_223566.1| Outer membrane protein/porin [Helicobacter... 29 1.3
ref|NP_223474.1| putative TYPE II DNA MODIFICATION ENZYME (... 29 1.3
ref|NP_223147.1| putative Outer membrane protein [Helicobac... 29 1.3
ref|NP_222894.1| putative [Helicobacter pylori J99] 29 1.3
ref|NP_223820.1| putative Outer membrane function [Helicoba... 29 1.7
ref|NP_223775.1| BIOPOLYMER TRANSPORT PROTEIN [Helicobacter... 29 1.7
ref|NP_223200.1| cag island protein [Helicobacter pylori J99] 29 1.7
ref|NP_223725.1| putative outer membrane protein [Helicobac... 28 2.3
ref|NP_223575.1| putative Outer membrane protein [Helicobac... 28 2.3
ref|NP_223978.1| SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEI... 28 3.0
ref|NP_222952.1| FLAGELLAR P-RING PROTEIN [Helicobacter pyl... 28 3.0
ref|NP_223625.1| putative [Helicobacter pylori J99] 28 3.9
ref|NP_223215.1| TRANSCRIPTION TERMINATION FACTOR [Helicoba... 28 3.9
ref|NP_223072.1| COPPER-TRANSPORTING P-TYPE ATPASE [Helicob... 28 3.9
ref|NP_222812.1| methyl-accepting chemotaxis protein (MCP) ... 28 3.9
ref|NP_224144.1| putative IRON(III) DICITRATE TRANSPORT PRO... 27 5.1
ref|NP_223779.1| ATP synthase F1, subunit alpha [Helicobact... 27 5.1
ref|NP_223536.1| CYSTEINYL-TRNA SYNTHETASE [Helicobacter py... 27 5.1
ref|NP_223169.1| putative PHOSPHOLIPASE A1 [Helicobacter py... 27 5.1
ref|NP_223001.1| putative FLAGELLAR-HOOK ASSOCIATED PROTEIN... 27 5.1
ref|NP_222990.1| putative [Helicobacter pylori J99] 27 5.1
ref|NP_222793.1| 30S RIBOSOMAL PROTEIN S20 [Helicobacter py... 27 5.1
ref|NP_223767.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 27 6.6
ref|NP_222961.1| putative [Helicobacter pylori J99] 27 6.6
ref|NP_222850.1| L-lactate permease [Helicobacter pylori J99] 27 6.6
ref|NP_223657.1| putative [Helicobacter pylori J99] 27 8.7
ref|NP_223423.1| MOLYBDOPTERIN COFACTOR BIOSYNTHETIC PROTEI... 27 8.7
ref|NP_223234.1| putative [Helicobacter pylori J99] 27 8.7
ref|NP_223137.1| putative [Helicobacter pylori J99] 27 8.7
>ref|NP_223574.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2399
Score = 3959 bits (10267), Expect = 0.0
Identities = 2077/2537 (81%), Positives = 2189/2537 (85%), Gaps = 146/2537 (5%)
Query: 1 MAFKKARLISKFISKGSFKLNKISKKIFTLNQILKCEKPLKRHKKALKPIKKLSNRNKSF 60
MAFKKARLIS+FISKGSFKLNKISKK FTLNQILK EKPLKRHKK K I+K N+NKSF
Sbjct: 1 MAFKKARLISRFISKGSFKLNKISKKFFTLNQILKREKPLKRHKKT-KSIEKPFNKNKSF 59
Query: 61 LKASVLLIGALGGLSHLRANECRYWSWSSWSYQDNIESGPNSPTHNSYCLFSSTQGSGTY 120
LKASVLLIGALGGLSHLRANECRYWSWSSWSYQDNIESGPNSPTHNSYCLFSS QGSGTY
Sbjct: 60 LKASVLLIGALGGLSHLRANECRYWSWSSWSYQDNIESGPNSPTHNSYCLFSSAQGSGTY 119
Query: 121 YLNTLTTYSAGGASFTQKFNNGTLNVGENIRFGGTGINGGDVGYITGTYDAQTINFNSSH 180
YLNTLTTYSAGGASFTQKFN GTL++G NIRFGGTGINGGDVGYITGTY+AQ
Sbjct: 120 YLNTLTTYSAGGASFTQKFNGGTLDIGGNIRFGGTGINGGDVGYITGTYNAQ-------- 171
Query: 181 LTTGNSYADGGGATLNFNAANNITINQASFDNSHAGTQKSYMNFKGSN-IKVSGSSFTDD 239
T+NFN+++ T NS+A + +NF +N I ++ +SF D+
Sbjct: 172 -------------TMNFNSSHITT------GNSYADGGGTTLNFNATNNITINQASF-DN 211
Query: 240 TDGGFSFSGNSNNSTISFNQTSFNQGTYHFSNSATLSFNHSAFNQGTYNFNSTQSAFNNS 299
+D G Q +Y + + + S+F T N
Sbjct: 212 SDAG-------------------TQKSYMNFKGSNIKISGSSFTDDT-----------NG 241
Query: 300 AFNQGTYHFNGNASFDNDTFNQGTYSF-NTSKVSFSGINTLNSSSPFASLKGSVSFGSDA 358
FN + N SF+ +FNQGTY+F N++ +SF+ N + F S + +
Sbjct: 242 GFNFSGNNNNSTISFNQTSFNQGTYNFSNSATLSFNNSNFNQGTYHFNSAQSTFE----- 296
Query: 359 IFNLNQTLNNQTYDILTTNGAIQYGVYQSYLWDLINYKGDKAISHVEVGNNTYDVTFDIN 418
N N TY N+ + + + N+T++
Sbjct: 297 ----NSNFNQGTY----------------------NFNDNTSFN-----NDTFN------ 319
Query: 419 GQDETLQETFNKQSIITQFLGDDLQQQAQKTYQQDLSNSQSALNNAASDNKIANSDTDYT 478
Q T+N S F G + S+ ++L + S N A + + T
Sbjct: 320 ------QGTYNFNSSKVSFSGANTLNS---------SSPFASLKGSVSFNSGAIFNLNQT 364
Query: 479 KNKNATIKKDAQGLENTNQQIAQDE-QALQGDLDKLK-QLANSPTGFSEQAFNQAQKQEQ 536
N N T + TN I Q+ DL K A S S ++
Sbjct: 365 LNNNQTYD-----ILTTNGAIQYGVYQSYLWDLINYKGDKAISHVEVSNNTYDVTFDING 419
Query: 537 QDEQTLQNEEKTFNSEQEGLKQAIQQAQAQQQKQQQKQEQQQAQQTYQEDLTHSQSALND 596
QDE TLQ +TF S Q + Q + QQQAQQTYQED+ +SQ+ALN
Sbjct: 420 QDE-TLQ---ETF-SNQSIITQFLGD-----------DLQQQAQQTYQEDVANSQNALNK 463
Query: 597 VASDNTIASNDTNYTNNQNTAIKEDAQGLENTNQQIAQDEQALQGDLDKLKQLANSPTGF 656
VASDNTIA+NDT+YT + N I +DAQGLENTNQQI QDE+AL+ DL ++KQLANS TGF
Sbjct: 464 VASDNTIANNDTSYTQSSNPTILKDAQGLENTNQQIQQDEKALEKDLAQIKQLANSTTGF 523
Query: 657 SEQAFNQAQKQEQQDEQTLQNEEKTFNSEQERLKQAIANAK---PT-SPTPSHAPTPTKH 712
+EQAF QAQKQEQQDEQ LQN+E FN+EQE L+QAIANAK PT +PTPS PTP KH
Sbjct: 524 NEQAFTQAQKQEQQDEQALQNDENAFNTEQEGLEQAIANAKHANPTPNPTPSPTPTPIKH 583
Query: 713 TAPNTPPNKVPPTPPTQNPPAESVWSGVYWLQNKTYSNKGIYYIDPNLSGQSGQSGNTLS 772
TAPNTPP++VPPTPP+QN P +VW+GVYWLQNKTYSNKGIYYIDPNLSGQSGQSGNTLS
Sbjct: 584 TAPNTPPSQVPPTPPSQNLPKTNVWNGVYWLQNKTYSNKGIYYIDPNLSGQSGQSGNTLS 643
Query: 773 TYTANLFGRSFSVNIQNGTLIIGNNTESVNSNGLIWIGHGGFGYITGTFSAANIYLTNNF 832
TYTANL GRSF VN NGTLIIGNNTESVN NGLIWIGHGGFGYITGTFSAANIYLTNNF
Sbjct: 644 TYTANLLGRSFGVNANNGTLIIGNNTESVNDNGLIWIGHGGFGYITGTFSAANIYLTNNF 703
Query: 833 KTGEGVSNSDGGGANITFKASDNITMDGLNYNDAETVTKMIQTGASQHSYATFDALNNIS 892
KTGEGVSNSDGGGANITFKASDNITMDGLNYN+AETVTKMIQTGASQHSY TFDA NNIS
Sbjct: 704 KTGEGVSNSDGGGANITFKASDNITMDGLNYNNAETVTKMIQTGASQHSYTTFDATNNIS 763
Query: 893 VTNSSFSDMTWGKFSFSAKNISFSNASFSGFTNPGGSSVISANATNSLSFINSRLNGGAV 952
VT+S FSDMTWGKFSFSAKNISFSNASFSGFTNPGGSS IS NA+NSLSF +SRLNGGA+
Sbjct: 764 VTDSDFSDMTWGKFSFSAKNISFSNASFSGFTNPGGSSTISTNASNSLSFTDSRLNGGAI 823
Query: 953 YNLQANSLIFNNTQAVFNVLYSRGTSNFNATTQLLGNTNFTLSSQSLLNFNGDTTLQNNA 1012
YNLQANSLIFNNTQAVFNVLYSRGTSNFNATTQLLGNT+FTLSSQSLLNFNGDTTLQNNA
Sbjct: 824 YNLQANSLIFNNTQAVFNVLYSRGTSNFNATTQLLGNTSFTLSSQSLLNFNGDTTLQNNA 883
Query: 1013 NITLGNKSQAAFKNSLTLDNNSNLSLDNQSVLNANNTSAFNNQASLNIYNGSQATFNSLF 1072
NITLGNKSQAAFKNSLTLDNNSNLSLDNQSVLNAN TSAFNNQASLNIYNGSQA F+SLF
Sbjct: 884 NITLGNKSQAAFKNSLTLDNNSNLSLDNQSVLNANGTSAFNNQASLNIYNGSQAAFSSLF 943
Query: 1073 FNGGTLSLNASSKLNASNASFSNNTTINLDDSVLSASNTSSLNANINFQGASQADFGGNT 1132
FNGGTLSLNA+SKLNAS+ASFSNNTTINLDDSVL+A+NTSSLNANINFQGASQADFGGNT
Sbjct: 944 FNGGTLSLNANSKLNASSASFSNNTTINLDDSVLNANNTSSLNANINFQGASQADFGGNT 1003
Query: 1133 IIDTASFNFDSASSLNFNNLTANGALNFNGYTPSLTKALMSVSGQFVLGNNGDINLSDIN 1192
IDTASFNFDSASSLNFNNLTANGALNFNGY PSLTKALM+VSGQFVLGNNGDINLSDIN
Sbjct: 1004 TIDTASFNFDSASSLNFNNLTANGALNFNGYAPSLTKALMNVSGQFVLGNNGDINLSDIN 1063
Query: 1193 IFDNITKSVTYNILNAQKGITGISGANGYEKILFYGMKIQNATYSDNNNIQTWSFINPLN 1252
IFDNITKSVTYNILNAQKGITGISGANGYEKILFYGMKIQNATYSDNNNIQTWSFINPLN
Sbjct: 1064 IFDNITKSVTYNILNAQKGITGISGANGYEKILFYGMKIQNATYSDNNNIQTWSFINPLN 1123
Query: 1253 SSQIIQESIKNGDLTIEVLNNPNSASNTIFNIAPELYNYQASKQNPTGYSYDYSDNQAGT 1312
SSQIIQESIKNGDLTIEVLNNPNSASNTIFNIAPELYNYQ SKQNPTGYSYDYSDNQAGT
Sbjct: 1124 SSQIIQESIKNGDLTIEVLNNPNSASNTIFNIAPELYNYQDSKQNPTGYSYDYSDNQAGT 1183
Query: 1313 YYLTSNIKGLFTPKGSQTPQAPGTYSPFNQPLSSLNIYNKGFSSENLKTLLGILSQNSAT 1372
YYLTSNIKGLFTPKGSQTPQ PGTYSPFNQPL+SLNIYNKGFSSENLKTLLGILSQNSAT
Sbjct: 1184 YYLTSNIKGLFTPKGSQTPQTPGTYSPFNQPLNSLNIYNKGFSSENLKTLLGILSQNSAT 1243
Query: 1373 LKEMIESNQLDNITNINEVLQLLDKIKITQVQKQALLETINHLTDNINQTFNNGNLIIGA 1432
LKEMIESNQLDNITNINEVLQLLDKIKITQ QKQALLETINHLTDNINQTFNNGNL+IGA
Sbjct: 1244 LKEMIESNQLDNITNINEVLQLLDKIKITQAQKQALLETINHLTDNINQTFNNGNLVIGA 1303
Query: 1433 TQDNVTNSTSSIWFGGNGYSSPCTLDSATCSSFRNTYLGQLLGSTSPYLGYINADFKAKS 1492
TQDNVTNSTSSIWFGGNGYSSPC LDSATCSSFRNTYLGQLLGSTSPYLGYINADFKAKS
Sbjct: 1304 TQDNVTNSTSSIWFGGNGYSSPCALDSATCSSFRNTYLGQLLGSTSPYLGYINADFKAKS 1363
Query: 1493 IYITGTIGSGNAFESGGSADVTFQSANNLVLNKANIEAQATDNIFNLLGQKGIEKIFNQG 1552
IYITGTIGS NAFESGGSADVTFQSANNLVLNKANIEAQATDNIFNLLGQ+GI+KIFNQG
Sbjct: 1364 IYITGTIGSSNAFESGGSADVTFQSANNLVLNKANIEAQATDNIFNLLGQEGIDKIFNQG 1423
Query: 1553 NLANVLSQVAMEKIKQAGGLGNFIENALSPLSKELPASLQNETLGQLIGQNNLDDLLNNS 1612
NLANVLSQ+AMEKIKQAGGLGNFIENALSPLSKELPASLQ+ETLGQLIGQNNLDDLLNNS
Sbjct: 1424 NLANVLSQMAMEKIKQAGGLGNFIENALSPLSKELPASLQDETLGQLIGQNNLDDLLNNS 1483
Query: 1613 GVMNAIQNIISKKLSIFGNFVTPSIIENYLAKQSLKSMLDDKGLLNFIGGYMNASELSSI 1672
GVMN IQNIIS+KLSIFGNFVTPSIIENYLAKQSLKSMLDDKGLLNFIGGY++ASELSSI
Sbjct: 1484 GVMNEIQNIISQKLSIFGNFVTPSIIENYLAKQSLKSMLDDKGLLNFIGGYIDASELSSI 1543
Query: 1673 LSVVLKDITNPPTSLQKDIGVVANDLLNEFLGQDVIKKLESQGLVSNIINNIISQGGLSG 1732
L V+LKDITNPPTSLQKDIGVVANDLLNEFLGQDV+KKLESQGLVSNIINN+ISQGGLSG
Sbjct: 1544 LGVILKDITNPPTSLQKDIGVVANDLLNEFLGQDVVKKLESQGLVSNIINNVISQGGLSG 1603
Query: 1733 VYNQGLGSVLPPSLQNALKENDLGTLLSPRGLHDFWQKGYFNFLSNGYVFVNNSSFSNAT 1792
VYNQGLGSVLPPSLQNALKENDLGTLLSPRGLHDFWQKGYFNFLSNGYVFVNNSSFSNAT
Sbjct: 1604 VYNQGLGSVLPPSLQNALKENDLGTLLSPRGLHDFWQKGYFNFLSNGYVFVNNSSFSNAT 1663
Query: 1793 GGSLNFVANKSIIFNGDNTIDFSKYQGALIFASNDVSNINITTLNATNGLSLNAGLNNVS 1852
GGSLNFVANKSIIFNGDNTIDFSKYQGALIFASN VSNINITTLNATNGLSLNAGLNNVS
Sbjct: 1664 GGSLNFVANKSIIFNGDNTIDFSKYQGALIFASNGVSNINITTLNATNGLSLNAGLNNVS 1723
Query: 1853 VQKGEICVNLANCPTTKNSSSTNSSVTPTNESLSVRANNFTFLGAIASNGAIDLSQVKNN 1912
VQKGEIC+NLANCPTTKNSS NSSVTPTNESLSV ANNFTFLG I SNGAIDLSQV NN
Sbjct: 1724 VQKGEICINLANCPTTKNSSPANSSVTPTNESLSVHANNFTFLGTIISNGAIDLSQVTNN 1783
Query: 1913 SVIDTLNLNENAALQANNLTITNAFNNASNSTANINGNFTLNQQATLSTNASGLNVMGNF 1972
SVI TLNLNENA LQANNLTITNAFNNASNSTANI+GNFTLNQQATLSTNASGLNVMGNF
Sbjct: 1784 SVIGTLNLNENATLQANNLTITNAFNNASNSTANIDGNFTLNQQATLSTNASGLNVMGNF 1843
Query: 1973 NSYGDLVFNLSHSVSHAIINAQGSATIMANNNNPLIQFNTSSKEVGTYTLIDSAKAIYYG 2032
NSYGDLVFNLSHSVSHAIIN QG+ATIMA NNNPLIQFN SSKEVGTYTLIDSAKAIYYG
Sbjct: 1844 NSYGDLVFNLSHSVSHAIINTQGTATIMA-NNNPLIQFNASSKEVGTYTLIDSAKAIYYG 1902
Query: 2033 YNNQITGGSSLDNYLKLYTLIDINGKHMVMTDNGLTYNGQAVSVKDGGLVVGFKDSQNQY 2092
YNNQITGGSSLDNYLKLY LIDINGKHMVMTDNGLTYNGQAVSVKDGGLVVGFKDSQNQY
Sbjct: 1903 YNNQITGGSSLDNYLKLYALIDINGKHMVMTDNGLTYNGQAVSVKDGGLVVGFKDSQNQY 1962
Query: 2093 IYTSILYNKVKIAVSNDPINNLQAPTLKQYIAQIQGTQGVDSIDQAGGSQAINWLNKIFE 2152
IYTSILYNKVKIAVSNDPINN QAPTLKQYIAQIQG Q VDSIDQAGG+QAINWLNKIFE
Sbjct: 1963 IYTSILYNKVKIAVSNDPINNPQAPTLKQYIAQIQGVQSVDSIDQAGGNQAINWLNKIFE 2022
Query: 2153 TKGSPLFAPYYLESHSTKDLTTIAGDIANTLEVIANPNFKNDATNILQINTYTQQMSRLA 2212
TKGSPLFAPYYLESHSTKDLTTIAGDIANTLEVIANPNFKNDATNILQINTYTQQMSRLA
Sbjct: 2023 TKGSPLFAPYYLESHSTKDLTTIAGDIANTLEVIANPNFKNDATNILQINTYTQQMSRLA 2082
Query: 2213 KLSDTSTFASADFHERLEALKNKRFADAIPNAMDVILKYSQRNRVKNNVWATGVGGASFI 2272
KLSDTSTFA +DF ERLEALKNKRFADAIPNAMDVILKYSQRNRVKNNVWATGVGGASFI
Sbjct: 2083 KLSDTSTFARSDFLERLEALKNKRFADAIPNAMDVILKYSQRNRVKNNVWATGVGGASFI 2142
Query: 2273 NGGTGTLYGINVGYDRFIKGVIVGGYAAYGYSGFHANITQSGSSNVNMGVYSRAFIKRSE 2332
+GGTGTLYGINVGYDRFIKGVIVGGYAAYGYSGFHANITQSGSSNVN+GVYSRAFIKRSE
Sbjct: 2143 SGGTGTLYGINVGYDRFIKGVIVGGYAAYGYSGFHANITQSGSSNVNVGVYSRAFIKRSE 2202
Query: 2333 LTMSLNETWGYNKTFINSYDPLLSIINQSYKYDTWTTDAKINYGYDFMFKDKSVIFKPQI 2392
LTMSLNETWGYNKTFINSYDPLLSIINQSY+YDTWTTDAKINYGYDFMFKDKSVIFKPQ+
Sbjct: 2203 LTMSLNETWGYNKTFINSYDPLLSIINQSYRYDTWTTDAKINYGYDFMFKDKSVIFKPQV 2262
Query: 2393 GLAYYYIGLSGLRGIMDDPIYNQFRANADPNKKSVLTINFALESRHYFNKNSYYFVIADV 2452
GL+YYYIGLSGLRGIMDDPIYNQFRANADPNKKSVLTINFALESRHYFNKNSYYFVIADV
Sbjct: 2263 GLSYYYIGLSGLRGIMDDPIYNQFRANADPNKKSVLTINFALESRHYFNKNSYYFVIADV 2322
Query: 2453 GRDLFINSMGDKMVRFIGNNTLSYRDGGRYNTFASIITGGEIRLFKTFYVNAGIGARFGL 2512
GRDLFINSMGDKMVRFIGNNTLSYRDGGRYNTFASIITGGEIRLFKTFYVNAGIGARFGL
Sbjct: 2323 GRDLFINSMGDKMVRFIGNNTLSYRDGGRYNTFASIITGGEIRLFKTFYVNAGIGARFGL 2382
Query: 2513 DYKDINITGNIGMRYAF 2529
DYKDINITGNIGMRYAF
Sbjct: 2383 DYKDINITGNIGMRYAF 2399
>ref|NP_223274.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 3194
Score = 1654 bits (4282), Expect = 0.0
Identities = 1010/2590 (38%), Positives = 1453/2590 (55%), Gaps = 302/2590 (11%)
Query: 127 TYSAGGASFTQKFNNGTLNVG------ENIRFGGTGINGGDVGYITGTYDAQTINFNSSH 180
+++ A T FNN + + G + + F G NGG + + +F +
Sbjct: 720 SFNFNHAEQTNAFNNNSFSGGSFSFNAKQVDFNGNSFNGGVFNF----NNTPKASFTNDT 775
Query: 181 LTTGNSYADGGGATLNFNAANNITIN-QASFDNSHAGTQKSYMNFKGSNIKVSGSSFTDD 239
N + G T +F + + N Q + GT +N K K + ++
Sbjct: 776 FNVNNQFKINGAQT-DFTFSKGVVFNMQGLLSSLSVGTTYQLLNAKSVGYKDNNNALYQM 834
Query: 240 TDGGFSFSGNSNNSTISFNQTSFNQGTYH---FSNSATLSFNHSAFNQGTYNFNSTQSAF 296
++ N + + N+T+ N + F+++ + FN G
Sbjct: 835 LR--WTSGENPSGKLVDENKTAPNSAKIYNVQFTDNGLTYYIKENFNNGI---------- 882
Query: 297 NNSAFNQGTYHFNGNASFDNDTFNQGTYSFNTSKVSF--SGINTLNSSSPFASLKGSVSF 354
+ T + + DND FN + N S F +G+ T ++ +
Sbjct: 883 --TLTRLCTLGYTHCVNIDNDAFNLKNVNNNASNTVFYLNGMTTWKTAGTGVFTQDYS-- 938
Query: 355 GSDAIFNLNQTLNNQTYDILTTNGAIQYGVYQSYLWDLINY-KGDKAISHVEVGNNTYDV 413
G++++ NQT T+N + +G W L+ Y +G + +++
Sbjct: 939 GTNSVLVFNQTTPFLAGANPTSNSVVGFGKTSGAEWGLVGYIQGVFKANQIDITGTIRSG 998
Query: 414 TFDINGQDETLQETFNKQSIITQFLGDDLQQQAQKTYQQDLSNSQSALNNAASDNKIANS 473
G TL FN Q + +L+N ++ L N+ + + N
Sbjct: 999 NGAKTGGGATL--VFNAQERLN-------------IANANLNNDKAGLQNSWMNFIVNNG 1043
Query: 474 DTDYTKNKNATIKKDAQGLENTNQQIAQDEQALQGD----LDKLKQLANSP---TGFSEQ 526
+ + T N N + + G I D+ ++ G +D N+ FS+
Sbjct: 1044 NLNVT-NANFSNQTPHGGFNLKANNITWDKGSVSGGGNFGVDNANANGNAVIKNVNFSDN 1102
Query: 527 AFNQAQKQEQQDEQTLQNEEKTFNSEQEGLKQAIQQAQAQQQKQQQKQEQQQAQQTYQED 586
+ E +L E TFNS K Q ++ +
Sbjct: 1103 GTLIYKGGENSAGNSLTLENNTFNSYNINAKA--------QNLIFNNNSFNSGSYSFNDT 1154
Query: 587 LTHSQSALNDVASDNTIASNDTNYTNNQNTAIKEDAQGLENTNQQIAQDEQALQGDLDKL 646
+ N + + + + + + + N+ + + T + L GD K
Sbjct: 1155 KNVTFKGTNTLINSDPFSRLKGSVSIDNNSIFNIERDLTDKTTYTL------LSGDNIKY 1208
Query: 647 KQLANSPTGFSEQAFNQAQKQEQQDEQTLQNEEKTFNSEQERLKQAIANAKPTSPTPSHA 706
A + FS+ ++ +Q + F + Q + +P
Sbjct: 1209 NNQALADNVFSKNLWDLIHYDGEQGTLLRTDNNTYFVQFTQSNGQKFVFEETFNPGSITY 1268
Query: 707 PTPTKHTAPNTPPNKVPPTPPTQNPPAESVWSGVY----WLQNKTYSNKGIYYIDPNLSG 762
T H++P ++ +W+ V ++ KT G+ YI P
Sbjct: 1269 KYFTIHSSPFHT-----------EADSKDIWNQVRKQFDFIPGKTPVCVGVCYIAP---- 1313
Query: 763 QSGQSGNTLSTYTANLFGRSFSVNIQNGTLIIGNNTESVNSNG-LIWIGHGGFGYITGTF 821
L +A + +F + GTL++G+ E N+NG IW G Y+ G F
Sbjct: 1314 ---YKNQDLIGSSAFAWSLNFGATVV-GTLLLGSAQEKANNNGGSIWFGKNNLLYLHGNF 1369
Query: 822 SAANIYLTNNFKTGEGVSNSDGGGANITFKASDNITMDGLNYNDAETVTKMIQTGASQHS 881
+A NI+LTNNF G + + GGGA I F A + ++ DGLNY + +TV +QT ASQHS
Sbjct: 1370 NATNIFLTNNFNVG---NPNAGGGATINFNADETLSADGLNYTNFQTVAMGLQTSASQHS 1426
Query: 882 YATFDALNNISVTNSSFSDMTWGKFSFSAKNISFSNASFSGFTN-----PGGSSVISANA 936
+A F++ ++ + NS+F D TWG F F++ I+F N +FSG+TN GSS ++ A
Sbjct: 1427 WANFNSKLSMEIKNSNFRDFTWGGFRFNSGRITFENTTFSGWTNINGATESGSSYVNMVA 1486
Query: 937 TNSLSFINSRLNGGAVYNLQANSLIFNNTQAVFNVLYSRGTSNFNATTQLLGNTNFTLSS 996
L F +S L GG Y+L+AN++IFNNTQ V +V + S+ N GN F S
Sbjct: 1487 NTDLIFTDSILGGGIRYDLKANNIIFNNTQMVVDVSKNVNQSSLN------GNVTFNHSR 1540
Query: 997 QSLLNFNGDTTLQNNANITLGNKSQAAFKNSLTLDNNSNLSLDNQSVLNANNTSAFNNQA 1056
S ++ NA I +G + TL+N S+LS N SV N N T+AFN +
Sbjct: 1541 LS---------VKPNAAINIGGD-----QTQTTLENASSLSFYNDSVANFNGTTAFNGVS 1586
Query: 1057 SLNIYNGSQATFNS--------------LF--------------------FNGGTLSLNA 1082
LN+ +Q +FN LF FN TL+L A
Sbjct: 1587 YLNLNPNAQVSFNQANFNNANVTFYGIPLFGKTPNFGNSVRLINFKGDAKFNQATLNLRA 1646
Query: 1083 SS-KLNASNAS-FSNNTTINLDDSVLSASNTSSL--NANINFQGASQADFGGNTIIDT-- 1136
+ LN AS F NN+T+NL +S ++ N S+ N N G+S F GN++ +
Sbjct: 1647 KNIHLNFQGASTFENNSTMNLAESSQASFNALSVEGETNFNLNGSSLLSFNGNSVFNAPV 1706
Query: 1137 --------------------ASFNFDSASSLNFNNLTANGALNFNGYTPSLTKALMSVSG 1176
ASF+ + S+LNF ++ N ALN G + ++ G
Sbjct: 1707 NFYANNSQISFTHSATFNADASFDLGNNSTLNFQSVLLNSALNLLGNGGN--NLAINAKG 1764
Query: 1177 QFVLGNNGDINLSDINIFDNITKSVTYNILNAQKGITGISGANGYEKILFYGMKIQNATY 1236
F G+ G +NLS +N+F K+ Y++L AQ I G+ G NGYEKI FYG++I+ A Y
Sbjct: 1765 NFSFGSQGILNLSYMNLFGGDKKASVYDVLQAQ-NIDGLRGNNGYEKIRFYGIQIEKADY 1823
Query: 1237 SDNNNIQTWSFINPLNSSQIIQESIKNGDLTIEVLNNPNSASNTIFNIAPELYNYQASKQ 1296
S NN + +WSF NPLN+++ I E++ N L +++ N +++N +FN+AP LY+YQ +
Sbjct: 1824 SFNNGVHSWSFTNPLNTTETITETLHNNRLKVQISQN-GASNNAMFNLAPSLYDYQQNPY 1882
Query: 1297 NPTGYSYDYSDNQAGTYYLTSNIKGLFTPKGSQTPQAPGTYSPFNQPLSSLNIYNKGFSS 1356
+ + SY+++ ++AGTYYL+S+IKG + + PGTY+ NQPL +L+IYN+ S
Sbjct: 1883 DESENSYNHTSDKAGTYYLSSSIKGF-----GKNNEIPGTYNAQNQPLQALHIYNQAISK 1937
Query: 1357 ENLKTLLGILSQNSATLKEMIESNQLDNITNINE------VLQLLDKIKIT--QVQKQAL 1408
++L + + + + ++I S LDN+ N+N + +L + IT Q ++L
Sbjct: 1938 QDLNMIASLGKEFLPKVAKLIASGALDNL-NLNSPDSFETIFSILKEYGITLNQANWKSL 1996
Query: 1409 LETINHLTDNINQTFNNGNLIIGATQDNVTNSTSSIWFGGNGYSSPCTLDSATCSSFRNT 1468
L+ IN+ ++ N F+ G+L++GA ++ TN+ S +WFGG+GY +PC + TC FR T
Sbjct: 1997 LKIINNFSNTANYHFSQGSLVVGAIKEGQTNTNSVVWFGGDGYKNPCAVGDNTCQMFRQT 2056
Query: 1469 YLGQLLGSTSPYLGYINADFKAKSIYITGTIGSGNAFESGGSADVTFQSANNLVLNKANI 1528
LGQLL S+ PYLGYINA+FKAK+IYITGTIGSGNA+ SGGSA+V+F+SA NLVLN+ANI
Sbjct: 2057 NLGQLLNSSVPYLGYINANFKAKNIYITGTIGSGNAWGSGGSANVSFESATNLVLNQANI 2116
Query: 1529 EAQATDNIFNLLGQKGIEKIFNQGNLANVLSQVAMEKIKQAGGLGNFIENAL-SPLSKEL 1587
+AQ TD IF+ LG++GI+K+F + L NVLS + E+ + +NA+ L+ +
Sbjct: 2117 DAQGTDKIFSYLGKEGIDKLFGEKGLGNVLSNIVYEE--------SLNDNAIPKDLANMI 2168
Query: 1588 PASLQNETLGQLIGQNNLDDLLNNSGVMNAIQNIISKKL--SIFG-----NFVTP----- 1635
P L ++TL L+ +++LL S NAI I++ K +FG N + P
Sbjct: 2169 PKDLGSKTLSSLLSPTEVNNLLGVSAFKNAIMEILNSKTVGDVFGENGLLNALDPVKRKE 2228
Query: 1636 ------------------------------SIIENYLAKQSLKSML-------------- 1651
+ I N+ KQSL S
Sbjct: 2229 IDQMLLEQIQAHSSGFEKFIVKTLGIENVENFINNWYGKQSLSSFANNFVPGGLNQALDK 2288
Query: 1652 -----DDKGLLNFIG----------------------GYMNASELSSILSVVLKDITNPP 1684
D K L +F+ ++ +LS ++++ L ITNP
Sbjct: 2289 IGSSSDAKDLQSFLDKTTFGDILNQMINQAPLINKLISWLGPQDLSVLVNIALNSITNPS 2348
Query: 1685 TSLQKDIGVVANDLLNEFLGQDVIKKLESQGLVSNIINNIISQGGLSGVYNQGLGSVLPP 1744
L I + +LN+ LG+ V+ K+ S ++ +IN II+ G GVY+QGLGS+LP
Sbjct: 2349 KELLGAISGMGQKVLNDLLGEGVVNKIMSNQVLGQMINKIIADKGFGGVYHQGLGSILPK 2408
Query: 1745 SLQNALKENDLGTLLSPRGLHDFWQKGYFNFLSNGYVFVNNSSFSNATGGSLNFVANKSI 1804
SLQ+ LK+ +G+LL P+GLH+ WQKG FNF++ +VFVNNS FSNATGG LNFVA KSI
Sbjct: 2409 SLQDELKKLGMGSLLKPKGLHNLWQKGNFNFVAKNHVFVNNSLFSNATGGELNFVAGKSI 2468
Query: 1805 IFNGDNTIDFSKYQGALIFASNDVSNINITTLNATNGLSLNAGLNNVSVQKGEICVNLAN 1864
IFNG NTI+F++YQG L F S D SNI++ TLNATNGL+LNA N++SVQKG+ICVN+ +
Sbjct: 2469 IFNGKNTINFTQYQGRLSFVSKDFSNISLDTLNATNGLTLNASKNDISVQKGQICVNVLD 2528
Query: 1865 CPTTK----NSSSTNSSVTPTNESLSVRANNFTFLGAIASNGAIDLSQVKNNSVIDTLNL 1920
C T K ++S++S+ PTNE+L V ANNF FLG I +NG +D S+V N+ I TL+L
Sbjct: 2529 CMTAKGKTTQTNSSSSATAPTNETLEVSANNFAFLGTIKANGLVDFSKVLQNTTIGTLDL 2588
Query: 1921 NENAALQANNLTITNAFNNASNSTANINGNFTLNQQATLSTNASGLNVMGNFNSYGDLVF 1980
NA +ANNL + NAFNN SN ANI+GNF + + AT STN +GLNV GNFNS G L+F
Sbjct: 2589 GPNATFKANNLIVNNAFNNNSNYRANISGNFNVAKGATFSTNENGLNVGGNFNSEGPLIF 2648
Query: 1981 NLSHSVSHAIINAQGSATIMANNNNPLIQFNTSSKEVGTYTLIDSAKAIYYGYNNQITGG 2040
NL++ IIN G++TIM+ NN LI FNT K+ G YTLI +A + YGY+NQ G
Sbjct: 2649 NLNNPTHQTIINVTGTSTIMSYNNQALINFNTQLKQ-GAYTLI-NANRMVYGYDNQTILG 2706
Query: 2041 SSLDNYLKLYTLIDINGKHMVMTDNGLTYNGQAVSVKDGGLVVGFKDSQNQYIYTSILYN 2100
SL +YLKLYTLID NGK M + + L+Y+ Q VS+KDGGLVV FKD+Q Q +Y+SILY+
Sbjct: 2707 GSLSDYLKLYTLIDFNGKRMQLNGDSLSYDNQPVSIKDGGLVVSFKDNQGQMVYSSILYD 2766
Query: 2101 KVKIAVSNDPINNLQAPTLKQYIAQIQGTQGVDSIDQAGGSQAINWLNKIFETK-GSPLF 2159
K+++ VS+ P+ ++QAP+L+ Y+ +IQG+ G+++I A G+ +I WL+++F K G+PLF
Sbjct: 2767 KIQVTVSDKPM-SIQAPSLEYYVKRIQGSAGLNAIKSA-GNNSIMWLSELFAAKGGNPLF 2824
Query: 2160 APYYLESHSTKDLTTIAGDIANTLEVIANPNFKNDATNILQINTYTQQMSRLAKLSDTST 2219
APYYL+ + T+ + T+ DI + L +++N N KN++T++LQ+NTYTQQMSRLAKLS+ ++
Sbjct: 2825 APYYLQDNPTEHIVTLMKDITSALGMLSNSNLKNNSTDVLQLNTYTQQMSRLAKLSNFAS 2884
Query: 2220 FASADFHERLEALKNKRFADAIPNAMDVILKYSQRNRVKNNVWATGVGGASFINGGTGTL 2279
F S DF ERL +LKN+RFADA+PNAMDVILKYSQR+++KNN+WATGVGG SF+ GTGTL
Sbjct: 2885 FDSTDFSERLSSLKNQRFADAVPNAMDVILKYSQRDKLKNNLWATGVGGVSFVENGTGTL 2944
Query: 2280 YGINVGYDRFIKGVIVGGYAAYGYSGFHANITQSGSSNVNMGVYSRAFIKRSELTMSLNE 2339
YG+NVGYDRF++GVIVGGYAAYGYSGF+ IT S S NV++G+Y+RAFIK+SELT S+NE
Sbjct: 2945 YGVNVGYDRFVRGVIVGGYAAYGYSGFYERITSSKSDNVDVGLYARAFIKKSELTFSVNE 3004
Query: 2340 TWGYNKTFINSYDPLLSIINQSYKYDTWTTDAKINYGYDFMFKDKSVIFKPQIGLAYYYI 2399
TWG NKT I+S D LLS+INQSYKY TWTT+AK+NYGYDFMFK+KS+I KPQIGL YYYI
Sbjct: 3005 TWGANKTQISSNDALLSMINQSYKYSTWTTNAKVNYGYDFMFKNKSIILKPQIGLRYYYI 3064
Query: 2400 GLSGLRGIMDDPIYNQFRANADPNKKSVLTINFALESRHYFNKNSYYFVIADVGRDLFIN 2459
G+SGL G+M++ +YNQF+ANADP+KKSVLTI+FALE+RHYFN NSY++ I VGRDL +N
Sbjct: 3065 GMSGLEGVMNNVLYNQFKANADPSKKSVLTIDFALENRHYFNTNSYFYAIGGVGRDLLVN 3124
Query: 2460 SMGDKMVRFIGNNTLSYRDGGRYNTFASIITGGEIRLFKTFYVNAGIGARFGLDYKDINI 2519
SMGDK+VRFIGNNTLSYR G YNTFA+I TGGE+RLFK+FY NAG+GARFGLDYK I+I
Sbjct: 3125 SMGDKLVRFIGNNTLSYRKGDLYNTFANITTGGEVRLFKSFYANAGVGARFGLDYKMIDI 3184
Query: 2520 TGNIGMRYAF 2529
GNIGMR AF
Sbjct: 3185 IGNIGMRLAF 3194
Score = 166 bits (421), Expect = 5e-42
Identities = 126/359 (35%), Positives = 188/359 (52%), Gaps = 46/359 (12%)
Query: 120 YYLNTLTTY-SAGGASFTQKFNNGTLNV-----------GEN------IRFGGT-GINGG 160
+YLN +TT+ +AG FTQ ++ GT +V G N + FG T G G
Sbjct: 917 FYLNGMTTWKTAGTGVFTQDYS-GTNSVLVFNQTTPFLAGANPTSNSVVGFGKTSGAEWG 975
Query: 161 DVGYITGTYDAQTINFNSSHLTTGNSYADGGGATLNFNAANNITINQASFDNSHAGTQKS 220
VGYI G + A I+ + + +GN GGGATL FNA + I A+ +N AG Q S
Sbjct: 976 LVGYIQGVFKANQIDITGT-IRSGNGAKTGGGATLVFNAQERLNIANANLNNDKAGLQNS 1034
Query: 221 YMNF--KGSNIKVSGSSFTDDTD-GGFSFSGNS---NNSTIS----FNQTSFNQGTYHFS 270
+MNF N+ V+ ++F++ T GGF+ N+ + ++S F + N
Sbjct: 1035 WMNFIVNNGNLNVTNANFSNQTPHGGFNLKANNITWDKGSVSGGGNFGVDNANANGNAVI 1094
Query: 271 NSATLSFNHSAFNQGTYNFNSTQSAFNNSAFNQGTYHFNGNAS---FDNDTFNQGTYSFN 327
+ S N + +G N N+ FN +Y+ N A F+N++FN G+YSFN
Sbjct: 1095 KNVNFSDNGTLIYKGGENSAGNSLTLENNTFN--SYNINAKAQNLIFNNNSFNSGSYSFN 1152
Query: 328 TSK-VSFSGINTLNSSSPFASLKGSVSFGSDAIFNLNQTLNNQ-TYDILT------TNGA 379
+K V+F G NTL +S PF+ LKGSVS +++IFN+ + L ++ TY +L+ N A
Sbjct: 1153 DTKNVTFKGTNTLINSDPFSRLKGSVSIDNNSIFNIERDLTDKTTYTLLSGDNIKYNNQA 1212
Query: 380 IQYGVYQSYLWDLINYKGDKAISHVEVGNNTYDVTF-DINGQDETLQETFNKQSIITQF 437
+ V+ LWDLI+Y G++ + + NNTY V F NGQ +ETFN SI ++
Sbjct: 1213 LADNVFSKNLWDLIHYDGEQG-TLLRTDNNTYFVQFTQSNGQKFVFEETFNPGSITYKY 1270
Score = 151 bits (382), Expect = 2e-37
Identities = 150/497 (30%), Positives = 220/497 (44%), Gaps = 106/497 (21%)
Query: 5 KARLISKFISKGSFK--LNKISKKIFTLNQILKCEKPLKRHKKALKPIKKLSNRNKSFLK 62
K L +F SFK KI+KK +T+ L LK H + LS K FL
Sbjct: 7 KIDLKERFSKNRSFKGIKKKIAKK-YTIKNSLSIIYSLKTHSNS-----SLSINKKIFL- 59
Query: 63 ASVLLIGALGGLSHLRANECRYWSWSSWSYQDNIESGPNSPTHNSYCLFSSTQGSGTYYL 122
LG +S L A Y S W NS N+ + +YY+
Sbjct: 60 -------GLGFVSALSAQSEDYNSSVYWL---------NSVNENN--------NNKSYYI 95
Query: 123 NTLTTYSAGGASFTQKFNNGTLNVG----------ENIRFGGTGINGGDVGYITGTYDAQ 172
+ L T++ G SFTQ +NN L +G ++ FG G +G+ITG + A+
Sbjct: 96 SPLRTWAGGNRSFTQNYNNSQLYIGTKNASATPNHSSVWFGEKGY----IGFITGVFKAR 151
Query: 173 TINFNSSHLTTGNSYADGGGATLNFNAANNITINQASFDNSHAGTQKSYMNFKGSN-IKV 231
I F + + +GN GGGA L F ++N +T N A F N+ AGTQ S++N +N + +
Sbjct: 152 DI-FITGAVGSGNELKTGGGAILVFESSNELTTNGAYFQNNRAGTQTSWINLISNNSVNL 210
Query: 232 SGSSFTDDT-DGGFSFSGNSNNSTISFNQTSFNQGTYHF----SNSAT------------ 274
+ + F + T +GGF+ G I++N S N G + F SN AT
Sbjct: 211 TNTDFGNQTPNGGFNVMGRK----ITYNGGSVNGGNFGFDNVDSNGATTISGVTFNNNGA 266
Query: 275 ------------LSFNHSAFNQGTYNFNSTQSAFNNSAFN---QGTYHFNGNA------- 312
++F +S N N N+ FNNS G + GNA
Sbjct: 267 LTYKGGNGIGGSITFTNSNINHYKLNLNANSVTFNNSTLGSMPNGNANTIGNAYILNANN 326
Query: 313 -SFDNDTFNQGTYSFNTS--KVSFSGINTLNS-SSPFASLKGSVSFGSDAIFNLNQ---T 365
+F+N TFN G + FN S V+F G T+N+ +SPF ++ G V+ +AIFN+ T
Sbjct: 327 ITFNNLTFNGGWFVFNRSDAHVNFQGTTTINNPTSPFVNMTGKVTINPNAIFNIQNYTPT 386
Query: 366 LNNQTYDILTTNGAIQYGVYQSYLWDLINYKGDKAI---SHVEVGNN---TYDVTFDING 419
+ N NG I Y + LW++I K +A S NN TY VT+++ G
Sbjct: 387 IGNAYTLFSMKNGNIAYDDVNN-LWNIIRLKNTQATKDNSKNATSNNNTHTYYVTYNLGG 445
Query: 420 QDETLQETFNKQSIITQ 436
++ F+ SI+ Q
Sbjct: 446 TLYHFRQIFSPDSIVLQ 462
Score = 150 bits (379), Expect = 4e-37
Identities = 126/447 (28%), Positives = 194/447 (43%), Gaps = 80/447 (17%)
Query: 120 YYLNTLTTYSAGGASFTQKFN---------------NGTL-NVGENIRFGG-TGINGGDV 162
+YLN L T++ A F Q + NG + +RFGG G+N G
Sbjct: 498 FYLNGLNTWNYTQARFAQTYGGKNSALVFNATTPWANGAIPKSNSTVRFGGYEGVNWGKT 557
Query: 163 GYITGTYDAQTINFNSSHLTTGNSYADGGGATLNFNAANNITINQASFDNSHAGTQKSYM 222
GYITGT+ A + + + ++ +GN GGGATLNF A I I A+F N +Q SYM
Sbjct: 558 GYITGTFTADRV-YITGNMMSGNGAQTGGGATLNFVGATEINIAGATFKNLKTTSQNSYM 616
Query: 223 NFK-------GSNIKVSGSSFTDDTDGGFSFSGNSNNSTISFNQ---------------- 259
F I VS S F D TDGG+ F+GN +++FN+
Sbjct: 617 TFMALGNGSGSGKINVSQSDFYDWTDGGYDFTGNGVFDSVNFNKAYYKFQGAENSYNFKN 676
Query: 260 TSFNQGTYHFSNSATL-----------------SFNHSAFNQGTYNFNSTQ--SAFNNSA 300
T+F G + F T+ +FN FN G++NFN + +AFNN++
Sbjct: 677 TNFLAGNFKFQGKTTIEKSVLNDASYAFDGVNNAFNEDKFNGGSFNFNHAEQTNAFNNNS 736
Query: 301 FNQGTYHFNG-NASFDNDTFNQGTYSF-NTSKVSFSGINTLNSSSPFA--SLKGSVSFGS 356
F+ G++ FN F+ ++FN G ++F NT K SF+ +T N ++ F + +F
Sbjct: 737 FSGGSFSFNAKQVDFNGNSFNGGVFNFNNTPKASFTN-DTFNVNNQFKINGAQTDFTFSK 795
Query: 357 DAIFNLNQTLNN----QTYDILTTNGAIQY-----GVYQSYLWDLINYKGDKAISHVEVG 407
+FN+ L++ TY +L ++ Y +YQ W K + +
Sbjct: 796 GVVFNMQGLLSSLSVGTTYQLLNAK-SVGYKDNNNALYQMLRWTSGENPSGKLVDENKTA 854
Query: 408 NNT---YDVTFDINGQDETLQETFNKQSIITQFLGDDLQQQAQKTYQQDLSNSQSALNNA 464
N+ Y+V F NG ++E FN +T+ L D N ++ NNA
Sbjct: 855 PNSAKIYNVQFTDNGLTYYIKENFNNGITLTRLC--TLGYTHCVNIDNDAFNLKNVNNNA 912
Query: 465 ASDNKIANSDTDYTKNKNATIKKDAQG 491
++ N T + +D G
Sbjct: 913 SNTVFYLNGMTTWKTAGTGVFTQDYSG 939
Score = 139 bits (351), Expect = 7e-34
Identities = 235/1020 (23%), Positives = 377/1020 (36%), Gaps = 243/1020 (23%)
Query: 733 AESVWSGVYWLQ--NKTYSNKGIYYIDPNLSGQSGQSGNTLSTYTANLFGRSFSVNIQNG 790
+E S VYWL N+ +NK YYI P + G RSF+ N N
Sbjct: 71 SEDYNSSVYWLNSVNENNNNKS-YYISPLRTWAGGN--------------RSFTQNYNNS 115
Query: 791 TLIIGNNTESVNSN-GLIWIGHGGF-GYITGTFSAANIYLTNNFKTGEGVSNSDGGGANI 848
L IG S N +W G G+ G+ITG F A +I++T G G GGGA +
Sbjct: 116 QLYIGTKNASATPNHSSVWFGEKGYIGFITGVFKARDIFITG--AVGSGNELKTGGGAIL 173
Query: 849 TFKASDNITMDGLNYNDAETVTKMIQTGASQHSYATFDALNNISVTNSSFSDMT-WGKFS 907
F++S+ +T +G + + +Q S+ + N++++TN+ F + T G F+
Sbjct: 174 VFESSNELTTNGAYFQN--------NRAGTQTSWINLISNNSVNLTNTDFGNQTPNGGFN 225
Query: 908 FSAKNISFSNASFSG--------------------FTNPGGSSVISANAT-NSLSFINSR 946
+ I+++ S +G F N G + N S++F NS
Sbjct: 226 VMGRKITYNGGSVNGGNFGFDNVDSNGATTISGVTFNNNGALTYKGGNGIGGSITFTNSN 285
Query: 947 LNGGAVYNLQANSLIFNNTQ-----------------------AVFNVLYSRGTSNFN-- 981
+N + NL ANS+ FNN+ N+ ++ G FN
Sbjct: 286 INHYKL-NLNANSVTFNNSTLGSMPNGNANTIGNAYILNANNITFNNLTFNGGWFVFNRS 344
Query: 982 -ATTQLLGNTNFTLSSQSLLNFNGDTTLQNNANITLGNKSQAAFKNSLTLDN--NSNLSL 1038
A G T + +N G T+ NA + N + N+ TL + N N++
Sbjct: 345 DAHVNFQGTTTINNPTSPFVNMTGKVTINPNAIFNIQNYT-PTIGNAYTLFSMKNGNIAY 403
Query: 1039 DN----QSVLNANNTSAFNNQASLNIYNGSQATFNSLFFNGGTL----------SLNASS 1084
D+ +++ NT A + + N + T+ + GGTL S+ S
Sbjct: 404 DDVNNLWNIIRLKNTQATKDNSKNATSNNNTHTYYVTYNLGGTLYHFRQIFSPDSIVLQS 463
Query: 1085 KLNASNASFSNNTTINLDDSVLSASNTSSLNAN-------INFQGASQADFG-------- 1129
+N + N ++N+ D+V + N + A+ +N +QA F
Sbjct: 464 VYYGANNLYYTN-SVNIHDNVFNLKNINDDRADTIFYLNGLNTWNYTQARFAQTYGGKNS 522
Query: 1130 --------------------------------GNTIIDTASFNFDSASSLNFNNLTANGA 1157
G T T +F D + N ++ NGA
Sbjct: 523 ALVFNATTPWANGAIPKSNSTVRFGGYEGVNWGKTGYITGTFTADRV-YITGNMMSGNGA 581
Query: 1158 -------LNFNGYTP-----SLTKALMSVSGQ-----FVLGN---NGDINLSDINIFD-- 1195
LNF G T + K L + S LGN +G IN+S + +D
Sbjct: 582 QTGGGATLNFVGATEINIAGATFKNLKTTSQNSYMTFMALGNGSGSGKINVSQSDFYDWT 641
Query: 1196 ----NITKSVTYNILNAQKGITGISGA-NGYE----KILFYGMKIQNATYSDNNNIQTWS 1246
+ T + ++ +N K GA N Y L K Q T + + + S
Sbjct: 642 DGGYDFTGNGVFDSVNFNKAYYKFQGAENSYNFKNTNFLAGNFKFQGKTTIEKSVLNDAS 701
Query: 1247 FINPLNSSQIIQESIKNGDLTIEVLNNPNSASNTIFNIAPELYNYQASKQNPTGYS---Y 1303
+ ++ ++ G N+ +N F+ +N + N ++ +
Sbjct: 702 YAFDGVNNAFNEDKFNGGSFNFNHAEQTNAFNNNSFSGGSFSFNAKQVDFNGNSFNGGVF 761
Query: 1304 DYSDNQAGTYYL-TSNIKGLFTPKGSQTPQAPGTYSPFNQP--LSSLNIYNKGFSSENLK 1360
++++ ++ T N+ F G+QT FN LSSL++ G + + L
Sbjct: 762 NFNNTPKASFTNDTFNVNNQFKINGAQTDFTFSKGVVFNMQGLLSSLSV---GTTYQLLN 818
Query: 1361 TLLGILSQNSATLKEMIESNQLDNITN--INEVLQLLDKIKITQVQKQALLETINHLTDN 1418
N+ L +M+ +N + ++E + KI VQ T N LT
Sbjct: 819 AKSVGYKDNNNALYQMLRWTSGENPSGKLVDENKTAPNSAKIYNVQ-----FTDNGLTYY 873
Query: 1419 INQTFNNGNLI-----IGATQ-----------DNVTNSTSSIWFGGNGYSSPCTLDSATC 1462
I + FNNG + +G T NV N+ S+ F NG + T +A
Sbjct: 874 IKENFNNGITLTRLCTLGYTHCVNIDNDAFNLKNVNNNASNTVFYLNGMT---TWKTAGT 930
Query: 1463 SSFRNTYLGQ----LLGSTSPYL------------------------GYINADFKAKSIY 1494
F Y G + T+P+L GYI FKA I
Sbjct: 931 GVFTQDYSGTNSVLVFNQTTPFLAGANPTSNSVVGFGKTSGAEWGLVGYIQGVFKANQID 990
Query: 1495 ITGTIGSGNAFESGGSADVTFQSANNLVLNKANIEAQATDNIFNLLGQKGIEKIFNQGNL 1554
ITGTI SGN ++GG A + F + L + AN+ L + I N GNL
Sbjct: 991 ITGTIRSGNGAKTGGGATLVFNAQERLNIANANLNNDKAG-----LQNSWMNFIVNNGNL 1045
Score = 74.3 bits (181), Expect = 4e-14
Identities = 167/792 (21%), Positives = 289/792 (36%), Gaps = 188/792 (23%)
Query: 1418 NINQTFNNGNLIIGATQDNVTNSTSSIWFGGNGYSSPCTLDSATCSSFRNTYLGQLLGST 1477
+ Q +NN L IG + T + SS+WFG GY
Sbjct: 107 SFTQNYNNSQLYIGTKNASATPNHSSVWFGEKGY-------------------------- 140
Query: 1478 SPYLGYINADFKAKSIYITGTIGSGNAFESGGSADVTFQSANNLVLNKANIE-------- 1529
+G+I FKA+ I+ITG +GSGN ++GG A + F+S+N L N A +
Sbjct: 141 ---IGFITGVFKARDIFITGAVGSGNELKTGGGAILVFESSNELTTNGAYFQNNRAGTQT 197
Query: 1530 -------------------AQATDNIFNLLGQK-------------GIEKIFNQGNLANV 1557
Q + FN++G+K G + + + G A
Sbjct: 198 SWINLISNNSVNLTNTDFGNQTPNGGFNVMGRKITYNGGSVNGGNFGFDNVDSNG--ATT 255
Query: 1558 LSQVAMEK-----IKQAGGLG---NFIENALSPLSKELPA---SLQNETLGQLIGQNNLD 1606
+S V K G+G F + ++ L A + N TLG + N
Sbjct: 256 ISGVTFNNNGALTYKGGNGIGGSITFTNSNINHYKLNLNANSVTFNNSTLGSM--PNGNA 313
Query: 1607 DLLNNSGVMNAIQNIISKKLSIFGNFVTPSIIENYLAKQSLKSMLDDKG-LLNFIGGY-M 1664
+ + N+ ++NA NI L+ G + + + ++ Q ++ + +N G +
Sbjct: 314 NTIGNAYILNA-NNITFNNLTFNGGWFVFNRSDAHVNFQGTTTINNPTSPFVNMTGKVTI 372
Query: 1665 NASELSSILSVVLKDITNPPTSLQKDIGVVANDLLNEFLGQDVIKKLESQGLVSNIINNI 1724
N + + +I + I N T G +A D +N ++I+ +Q N N
Sbjct: 373 NPNAIFNIQNYT-PTIGNAYTLFSMKNGNIAYDDVNNL--WNIIRLKNTQATKDNSKNAT 429
Query: 1725 ISQGGLSGVYNQGLGSVL--------PPSL---------QNALKENDLG---TLLSPRGL 1764
+ + LG L P S+ N N + + + + +
Sbjct: 430 SNNNTHTYYVTYNLGGTLYHFRQIFSPDSIVLQSVYYGANNLYYTNSVNIHDNVFNLKNI 489
Query: 1765 HDFWQKGYFNFLSNGYVFVNNSSFSNATGGSLNFVANKSIIFN------------GDNTI 1812
+D + F NG +N +++ A N +++FN ++T+
Sbjct: 490 ND--DRADTIFYLNG---LNTWNYTQARFAQTYGGKNSALVFNATTPWANGAIPKSNSTV 544
Query: 1813 DFSKYQG------ALIFASNDVSNINIT-TLNATNGLSLNAG--LNNVSVQKGEICVNLA 1863
F Y+G I + + IT + + NG G LN V G +N+A
Sbjct: 545 RFGGYEGVNWGKTGYITGTFTADRVYITGNMMSGNGAQTGGGATLNFV----GATEINIA 600
Query: 1864 NCPTTKNSSSTNSSVTPTNESLSVRANNFTFLGAIASNGAIDLSQ------------VKN 1911
T KN +T+ + T F LG + +G I++SQ
Sbjct: 601 GA-TFKNLKTTSQNSYMT----------FMALGNGSGSGKINVSQSDFYDWTDGGYDFTG 649
Query: 1912 NSVIDTLNLNENAALQANNLTITNAFNNASNSTANINGNFTLNQQATLSTNA-------- 1963
N V D++N N+ A + + F N T + GNF + T+ +
Sbjct: 650 NGVFDSVNFNK-AYYKFQGAENSYNFKN----TNFLAGNFKFQGKTTIEKSVLNDASYAF 704
Query: 1964 SGLNVMGNFNSYGDLVFNLSHSVSHAIINAQGSATIMANNNNPLIQFNTSSKEVGTYTLI 2023
G+N N + + FN +H+ N + + N + FN +S G +
Sbjct: 705 DGVNNAFNEDKFNGGSFNFNHAEQTNAFNNNSFSGGSFSFNAKQVDFNGNSFNGGVFNFN 764
Query: 2024 DSAKAIY----YGYNNQI-TGGSSLDNYLKLYTLIDINGKHMVMTDNGLTYNGQAVSVKD 2078
++ KA + + NNQ G+ D + ++ G + G TY Q ++ K
Sbjct: 765 NTPKASFTNDTFNVNNQFKINGAQTDFTFSKGVVFNMQGL-LSSLSVGTTY--QLLNAKS 821
Query: 2079 GGLVVGFKDSQN 2090
VG+KD+ N
Sbjct: 822 ----VGYKDNNN 829
Score = 43.5 bits (101), Expect = 7e-05
Identities = 31/131 (23%), Positives = 52/131 (39%), Gaps = 26/131 (19%)
Query: 121 YLNTLTTYSAGGASFTQKFNNGTLNVGENIRFGGTGING----GD--------------- 161
+ NT + + G+ G N + FGG G GD
Sbjct: 2003 FSNTANYHFSQGSLVVGAIKEGQTNTNSVVWFGGDGYKNPCAVGDNTCQMFRQTNLGQLL 2062
Query: 162 ------VGYITGTYDAQTINFNSSHLTTGNSYADGGGATLNFNAANNITINQASFDNSHA 215
+GYI + A+ I + + +GN++ GG A ++F +A N+ +NQA+ D
Sbjct: 2063 NSSVPYLGYINANFKAKNIYITGT-IGSGNAWGSGGSANVSFESATNLVLNQANIDAQGT 2121
Query: 216 GTQKSYMNFKG 226
SY+ +G
Sbjct: 2122 DKIFSYLGKEG 2132
Score = 40.4 bits (93), Expect = 6e-04
Identities = 105/507 (20%), Positives = 173/507 (33%), Gaps = 99/507 (19%)
Query: 112 SSTQGSGTYYLNTLTTYSAGGASFTQKFNNGTLNVG-------ENIRFGGTG--INGGDV 162
+S S T NT +Y+ + FNN + N G +N+ F GT IN
Sbjct: 1112 NSAGNSLTLENNTFNSYNINAKAQNLIFNNNSFNSGSYSFNDTKNVTFKGTNTLINSDPF 1171
Query: 163 GYITG--TYDAQTINFNSSHLTTGNSYADGGGATLNFNAANNITINQASFDNSHAGTQKS 220
+ G + D +I LT +Y G + +N NQA DN +
Sbjct: 1172 SRLKGSVSIDNNSIFNIERDLTDKTTYTLLSGDNIKYN-------NQALADNVFSKNLWD 1224
Query: 221 YMNF---KGSNIKVSGSS----FTDDTDGGFSFSGNSNNSTISFNQTSFNQGTYHF---- 269
+++ +G+ ++ ++ FT F F N +I++ + + +H
Sbjct: 1225 LIHYDGEQGTLLRTDNNTYFVQFTQSNGQKFVFEETFNPGSITYKYFTIHSSPFHTEADS 1284
Query: 270 -------------------------------------SNSATLSFNHSAFNQGTYNFNST 292
S++ S N A GT S
Sbjct: 1285 KDIWNQVRKQFDFIPGKTPVCVGVCYIAPYKNQDLIGSSAFAWSLNFGATVVGTLLLGSA 1344
Query: 293 QSAFNNSA----FNQGTY-----HFNGNASFDNDTFNQG--------TYSFNTSK-VSFS 334
Q NN+ F + +FN F + FN G T +FN + +S
Sbjct: 1345 QEKANNNGGSIWFGKNNLLYLHGNFNATNIFLTNNFNVGNPNAGGGATINFNADETLSAD 1404
Query: 335 GINTLNSSSPFASLKGSVSFGSDAIFN--LNQTLNNQTYDILT------TNGAIQYGVYQ 386
G+N N + L+ S S S A FN L+ + N + T +G I +
Sbjct: 1405 GLNYTNFQTVAMGLQTSASQHSWANFNSKLSMEIKNSNFRDFTWGGFRFNSGRITFENTT 1464
Query: 387 SYLWDLINYKGDKAISHVEVGNNTYDVTFDINGQDETLQETFNKQSIITQFLGDDLQQQA 446
W IN + S+V + NT D+ F + ++ +II F +
Sbjct: 1465 FSGWTNINGATESGSSYVNMVANT-DLIFTDSILGGGIRYDLKANNII--FNNTQMVVDV 1521
Query: 447 QKTYQQDLSNSQSALNNAASDNKIANSDTDYTKNKNATIKKDAQGLENTNQQIA--QDEQ 504
K Q N N++ K N+ + ++ T ++A L N +A
Sbjct: 1522 SKNVNQSSLNGNVTFNHSRLSVK-PNAAINIGGDQTQTTLENASSLSFYNDSVANFNGTT 1580
Query: 505 ALQGDLDKLKQLANSPTGFSEQAFNQA 531
A G + L N+ F++ FN A
Sbjct: 1581 AFNG-VSYLNLNPNAQVSFNQANFNNA 1606
>ref|NP_222995.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2902
Score = 1249 bits (3233), Expect = 0.0
Identities = 757/1904 (39%), Positives = 1098/1904 (56%), Gaps = 217/1904 (11%)
Query: 750 NKGIYYIDPNLSGQSGQSGNTLSTYTANLFGRSFSVNIQNGTLIIGNN------TESVNS 803
N IYY D ++ + SG TL +T F ++F+ QN ++ G +++ S
Sbjct: 1092 NNTIYYYDNSIDFYA--SGKTL--FTKAEFSQTFTG--QNSAIVFGAKNIWTSVSDAPQS 1145
Query: 804 NGLIWIGHGG----------------FGYITGTFSAANIYLTNNFKTGEGVSNSDGGGAN 847
N +I G G+ITG + A IY+T + ++G +S+ GGGA+
Sbjct: 1146 NVIIRFGDNKGAGSNDASGHCWNLQCIGFITGHYEAQKIYITGSIESGNRISS--GGGAS 1203
Query: 848 ITFKASDNITMDGLNYNDAETVTKMIQTGASQHSYATFDALNNISVTNSSFSDMTWGK-- 905
+ F + G+ +A + T +S ++ + A NI NS F D T
Sbjct: 1204 LNFNG-----LQGILLTNATLYNRAAGTQSSSMNFVSNSA--NIQAQNSYFIDDTAQNKG 1256
Query: 906 ---FSFSAKNISFSNASFSGFTNPGGSSVISANATNSLSFINSRLNGGAVYNLQANSLIF 962
FSF+A N+ FSN+SF G+ SV NA N++SF NS +Y +QA S++F
Sbjct: 1257 NPNFSFNALNLDFSNSSFRGYVGQT-QSVFKFNAVNAISFTNSSNLSSGLYQMQAKSVLF 1315
Query: 963 NNTQAVFNVLYSRGTSNFNATTQLLGNTNFTLSSQSLLNFNGDTTLQNNANITLGNKSQA 1022
+N+ N+ S GTS+ A L NA+I N S
Sbjct: 1316 DNS----NLSVSVGTSSIKANA---------------------INLSQNASINASNHSTL 1350
Query: 1023 AFKNSLTLDNNSNLSLDNQSVLNANNTSAFNNQASLNIYNGSQATFNSLFFNGGTLSLNA 1082
+ L L++ S+L+L NQS +N +N + N+ ASL NGS FN G ++ N+
Sbjct: 1351 ELQGDLNLNDTSSLNL-NQSAINVSNNATINDYASLIASNGSHLNFN------GAVNFNS 1403
Query: 1083 SSKLNASNASFSNNTTINLDDSVLSASNTSSLNANINFQGASQADF-GGNTIIDTASFNF 1141
+ N T +L S + SL N S DF G + I +FNF
Sbjct: 1404 A------------NITTSLSSSSIVFKGAVSLRGQFNLSNNSSLDFQGSSAITSNTAFNF 1451
Query: 1142 D----SASSLNFN---NLTANGALNFNGYTPSLTKALMSVSGQFVLGNNGDINLSDINIF 1194
S S + F+ ++ +L N P+ + L + Q V + G +N+++I++
Sbjct: 1452 YDNAFSQSPITFHQALDIKVPLSLGGNLLNPNNSSVLNLKNSQLVFSDQGSLNIANIDLL 1511
Query: 1195 DNIT--KSVTYNILNAQKGITGISGANGYEKILFYGMKIQNATYSDNNNIQTWSFINPLN 1252
++ K+ YNI+ A N YE+I F+GM+I + Y N QT+SF NPLN
Sbjct: 1512 SDLNGNKNRVYNIIQADMN------GNWYERINFFGMRINDGIYDAKN--QTYSFTNPLN 1563
Query: 1253 SSQIIQESIKNGDLTIEVLNNPNSASNTIFNIAPELYNYQASKQNPTGYSYDYSDNQAGT 1312
++ I ES KN L++ + P NT++NI E++NYQ N G Y YSD+ G
Sbjct: 1564 NALKITESFKNNQLSVTLSQIPG-IKNTLYNIGSEIFNYQKVYNNANGV-YSYSDDAQGV 1621
Query: 1313 YYLTSNIKGLFTPKGSQTPQAPG-------------------TYSPFNQPLSSLNIYNKG 1353
+YLTS++KG + P +Q+ QA G TY+ P+S+L++YNKG
Sbjct: 1622 FYLTSSVKGYYNP--NQSYQASGSNNTTKNNNLTSESSVISQTYNAQGNPISALHVYNKG 1679
Query: 1354 FSSENLKTLLGILSQNSATLKEMIESN-QLDNITNIN-EVLQLLDKIKITQVQKQALLET 1411
++ N+K L + + +K+++ ++ L +++N+ + L L K+ IT + + E
Sbjct: 1680 YNFSNIKALGQMALKLYPEIKKILGNDFSLSSLSNLKGDALNQLTKL-ITPSDWKNINEL 1738
Query: 1412 INHLTDNINQTFNNGNLIIGATQDNVTNSTSSIWFGGNGYSSPCTLDSATCSSFRNTYLG 1471
I++ +++ Q FNNG LIIGAT+ T++ S++ FGG GY PC C FR TYLG
Sbjct: 1739 IDNANNSVVQNFNNGTLIIGATKIGQTDTNSAVVFGGLGYQKPCDYTDIVCQKFRGTYLG 1798
Query: 1472 QLLGSTSPYLGYINADFKAKSIYITGTIGSGNAFESGGSADVTFQSANNLVLNKANIEAQ 1531
QLL S S LGYI+ F AK IY+TGT+GSGNA+ +GGSA VTF S +L+LN+ANI +
Sbjct: 1799 QLLESISADLGYIDTTFNAKEIYLTGTLGSGNAWGTGGSASVTFNSQTSLILNQANIVSS 1858
Query: 1532 ATDNIFNLLGQKGIEKIFNQGNLANVLSQVAMEKIKQAGGLGNFIENAL---SPLSKELP 1588
TD IF++LGQ+GI K+FNQ LAN+L +VAM+ I +AGGLGN I N L S + L
Sbjct: 1859 QTDGIFSMLGQEGINKVFNQAGLANILGEVAMQSINKAGGLGNLIVNTLGSDSVIGGYLT 1918
Query: 1589 ASLQNETLGQLIGQNNLDDLLNNSGVMNAIQNIISKKLSIFGNFVTPSI---------IE 1639
+N+TL QL+GQNN D+L+N+SG+ AI+++I +KL + V E
Sbjct: 1919 PEQKNQTLSQLLGQNNFDNLMNDSGLNTAIKDLIRQKLGFWTGLVGGLAGLGGIDLQNPE 1978
Query: 1640 NYLAKQSLKSMLDDKGLLNFIGGYMNASELSSILSVVLKDITNPPTSLQKDIGVVANDLL 1699
+ S+ +L KGL N I G+++A+++ ++SV+L+DI P +L+ D+ + ++
Sbjct: 1979 KLIGSMSINDLLSKKGLFNQITGFISANDIGQVISVMLQDIVKPSDALKNDVAALGKQMI 2038
Query: 1700 NEFLGQDVIKKLES---QGLVSNIINNIISQGGLSGVYNQGLGSVLPPSLQNALKENDLG 1756
EFLGQD + LES + ++++ +++ GL +Y QGLG ++P N K+
Sbjct: 2039 GEFLGQDTLNSLESLLQNQQIKSVLDKVLAAKGLGSIYEQGLGDLIP----NLGKKG--- 2091
Query: 1757 TLLSPRGLHDFWQKGYFNFLSNGYVFVNNSSFSNATGGSLNFVANKSIIFNGDNTIDFSK 1816
+ +P GL WQKG F+F + G VFV NS+FSNA GG+L+F A S+IF G+N I F+
Sbjct: 2092 -IFAPYGLSQVWQKGDFSFNAQGNVFVQNSTFSNANGGTLSFNAGNSLIFAGNNHIAFTN 2150
Query: 1817 YQGALIFASNDVSNINITTLNATNGLSLNAGLNNVSVQKGEICVNLANC-----PTT--- 1868
+ G L SN VSNIN+T LNA+NGL +NA NNVSV +G + +N A+C PTT
Sbjct: 2151 HSGTLNLLSNQVSNINVTMLNASNGLKINATNNNVSVSQGNLFIN-ASCVQQSDPTTASA 2209
Query: 1869 --------KNSSSTNSS------VTPTNESLSVRANNFTFLGAIASNGAIDLSQVKNNSV 1914
N+SS+N+S + +ESL V AN F F G I +NG +D S++K ++
Sbjct: 2210 TNPCTTAQNNASSSNASNNAPIALNNNDESLVVTANGFNFSGNIYANGVVDFSKIKGSAN 2269
Query: 1915 IDTLNLNENAALQANNLTITN-------------------AFNNASNSTANINGNFTLNQ 1955
+ L L NA QANNLTI+N AFNN + + N +
Sbjct: 2270 VKNLYLYNNAQFQANNLTISNQAVLEKNASFVTNNLNIQGAFNNNATQKIEVLQNLVIAS 2329
Query: 1956 QATLSTNASGLNVMGNFNSYGDLVFNLSHSVS--HAIINAQGSATIMANNNNPLIQFNTS 2013
A+LST GL V G N+ G + FNL +S + + +I G I+ N N S
Sbjct: 2330 NASLSTGIYGLEVGGALNNLGAIHFNLENSQTPVNPLIQVGG---IINLNTTQTPFMNVS 2386
Query: 2014 SKEVGTYTLIDSAKAIYYGYNNQITGGSSLDNYLKLYTLIDINGKHMVMTDNGLTYNGQA 2073
GTYTL+ S++ I Y N +SL +YLKLYTLI+ING H+ + LTY GQ
Sbjct: 2387 VANGGTYTLLKSSRYIDYNINP-----NSLQSYLKLYTLININGNHIEEKNGVLTYLGQR 2441
Query: 2074 VSVKDGGLVVGF------KDSQNQYIYTSILYNKVKIAVSNDPINNLQAPTLKQYIAQIQ 2127
V ++D GL++ SQN + S+L+N++K++ N + + PTL+ YI IQ
Sbjct: 2442 VLLQDKGLLLSVALPNSNNASQNNILSLSVLHNQIKMSYGNK-VMDFTPPTLQDYIVGIQ 2500
Query: 2128 GTQGVDSIDQAGGSQAINWLNKIF-ETKGSPLFAPYYLESHSTKDLTTIAGDIANTLEVI 2186
G ++ I+ GG+ AI WL+ + ETK +PLFAP YLE+HS ++ + D+ NT +I
Sbjct: 2501 GQSALNQIEAVGGNNAIKWLSTLMMETKENPLFAPIYLENHSLNEILGVTKDLQNTASLI 2560
Query: 2187 ANPNFKNDATNILQINTYTQQMSRLAKLSD-TSTFASADFHERLEALKNKRFADAIPNAM 2245
+NPNF+N+AT++L++ +YTQQ SRL KLSD + ++F ERL LKNKRF+D PN
Sbjct: 2561 SNPNFRNNATSLLEMASYTQQTSRLTKLSDFRAREGESNFSERLLELKNKRFSD--PNPS 2618
Query: 2246 DVILKYSQRNRVKNNVWATGVGGASFINGGTGTLYGINVGYDRFIKGVIVGGYAAYGYSG 2305
+V +KYSQ ++ NN+W GVGGASFI+GG GTLYG+NVGYDR +K VI+GGY AYGYSG
Sbjct: 2619 EVFVKYSQLSKHPNNLWIQGVGGASFISGGNGTLYGLNVGYDRLVKSVILGGYVAYGYSG 2678
Query: 2306 FHANITQSGSSNVNMGVYSRAFIKRSELTMSLNETWGYNKTFINSYDPLLSIINQSYKYD 2365
F+ NI S ++NV++G+Y+RAF+KR+E T+S NET+G N + INS + LLS++NQ Y Y+
Sbjct: 2679 FNGNIMHSLANNVDVGMYARAFLKRNEFTLSANETYGGNASHINSSNSLLSVLNQRYNYN 2738
Query: 2366 TWTTDAKINYGYDFMFKDKSVIFKPQIGLAYYYIGLSGLRGIMDDPIYNQFRANADPNKK 2425
TWTT NYGYDFMFK KSV+ KPQ+GL+Y++IGLSG++G M +P Y QF +++P+ +
Sbjct: 2739 TWTTSVNGNYGYDFMFKQKSVVLKPQVGLSYHFIGLSGMKGKMQNPAYQQFVMHSNPSNE 2798
Query: 2426 SVLTINFALESRHYFNKNSYYFVIADVGRDLFINSMGDKMVRFIGNNTLSYRDGGRYNTF 2485
SVLT+N LESR YF KNSYYFV A +GRDL I + GD +VRF+G NTL YR G +NTF
Sbjct: 2799 SVLTLNMGLESRKYFGKNSYYFVTARLGRDLLIKAKGDNVVRFVGENTLLYRKGEIFNTF 2858
Query: 2486 ASIITGGEIRLFKTFYVNAGIGARFGLDYKDINITGNIGMRYAF 2529
AS+ITGGE+ L++ YVNAG+G + GL Y+D+NITGN+GMR AF
Sbjct: 2859 ASVITGGEMHLWRLMYVNAGVGLKMGLQYQDLNITGNVGMRVAF 2902
Score = 177 bits (448), Expect = 4e-45
Identities = 428/1922 (22%), Positives = 714/1922 (36%), Gaps = 389/1922 (20%)
Query: 117 SGTYYLNTLTTYSAGGASFTQKFNNGTLNV--GENIRFGGTGINGGDV------GYITGT 168
+GTY+L+ L Y+ G ++N G L++ G N F +G G+ T
Sbjct: 116 NGTYFLSGLYNYTGG------EYNGGNLDIELGSNATFNLGASSGNSFTSWYPNGHTDVT 169
Query: 169 YDAQTINFNSSHLTTGNSYADGGG-----ATLNFNAANNITINQASFDNSHAGTQKSYMN 223
+ A TIN N+S + GN G G ATLN NA N +TIN +
Sbjct: 170 FSAGTINVNNS-VEVGNRVGSGAGTHTGTATLNLNA-NKVTINS------------NISA 215
Query: 224 FKGSNIKVSGSSFTDDTDGGFSFSGNSNNSTISFNQTSFNQGTYHFSNSATLSFNHSAFN 283
+K S + V GN+N S I+ N S N T S+ A + +
Sbjct: 216 YKTSQVNV----------------GNAN-SVITINSVSLNGDTC--SSLARVGVGANCST 256
Query: 284 QG-TYNFNSTQSAFNNSAFNQ-GTYHFNGNASFDNDTFNQGTYSFNTSKVSFSGINTLNS 341
G +Y+F T +A N + N G++ F NA+F N G ++FN F+ N
Sbjct: 257 SGPSYSFKGTTNATNTTFSNSSGSFTFEENATFSGAKLNGGAFTFNKK---FNATNNTAF 313
Query: 342 SSPFASLKGSVSFGSDAIFNLNQTLNNQ-TYDILTTNGAIQYGVYQSYLWDLINYKGDKA 400
+S + KG+ SF N + T NNQ T+ + NG
Sbjct: 314 NSGSFTFKGTSSFNGANFSNASYTFNNQATFQNSSFNGG--------------------- 352
Query: 401 ISHVEVGNNTYDVTFDINGQDETLQETFNKQSIITQFLGDDLQQQAQKTYQQDLSNS--Q 458
TF N D+T Q T + Q + F G + T++Q +NS Q
Sbjct: 353 -------------TFTFN--DQTNQSTQHPQIQNSSFSGSATTLKGFATFEQAFNNSNHQ 397
Query: 459 SALNNAASDNKIANSDTDYTKNKNATIKKDAQGLE-NTNQQIAQDEQALQGDLDKLKQLA 517
+ NA+ +N N+ T K+A+ + +TN L G D LK A
Sbjct: 398 LTIQNASFNNATFNNTGKITIEKDASFNNTSFNTPVDTNNMTISGGVTLSGKND-LKNGA 456
Query: 518 NSPTGFSEQAFNQAQKQEQQDEQTLQNEEKTFNSEQEGLKQAIQQAQAQQQKQQQKQEQQ 577
G S+ Q TFN G ++++ ++
Sbjct: 457 TLDFGSSKITLTQGT---------------TFNLTSLGSEKSVTILNSR----------- 490
Query: 578 QAQQTYQEDLTHSQSALNDVASDNTIASNDTNYTNNQNTAIKEDAQGLENTNQQIAQDEQ 637
TY L H+ ++L + N +S ++ AQGL + Q
Sbjct: 491 -GGITYNHLLNHAINSLTNALKTNESSSKPQSF-----------AQGLWDMITYNGVTGQ 538
Query: 638 ALQGDLDKLKQLANSPTGFSEQAFNQAQKQEQQDEQTLQNEEKTFNSEQERLKQAIANAK 697
L + K +SP+ S + Q + + T+ ++TF S + QA+ +
Sbjct: 539 LLNENAATSKPTDSSPSKSSTNS-TQVYQVGYKIGDTIYKLQETF-SHNSIIIQALESGT 596
Query: 698 PTSPTPSHAPTPTKHTAPNTPPNKVPPTPPTQNPPAESVWSGVYWLQNKTYSNKGIYYID 757
T P P + N + P N Y +++ ++ G YY+
Sbjct: 597 YTPP-----PVINGSKFDLSASNYINADMPWYNHK-------YYIPKSQNFTESGTYYLP 644
Query: 758 PNLSGQSGQSGNTLSTYTANLFGRSFSVNIQNGTLIIGNNTESVNSN------------- 804
S +YT N F ++FS + N L+IG N + N
Sbjct: 645 ---------SVQIWGSYT-NSFKQTFSAS--NSNLVIGYNATWTDHNVSSSDTVAFGDTS 692
Query: 805 GLIWIGHGG-------FGYITGTFSAANIYLTNNFKTGEGVSNSDGGGANITFKASDNIT 857
G GH G G GT+SA ++Y+T N ++G + GG AN+ F D+I
Sbjct: 693 GSALNGHCGPWPYYQCTGTTNGTYSAYHVYITANLRSGNRIGT--GGAANLIFNGVDSIN 750
Query: 858 MDG---LNYNDAETVTKMIQTGASQHSYATFDALNN---ISVTNSSFSDMTW-GKFSFSA 910
+ +N + M + + + + LN+ + V ++F++ GKF F+A
Sbjct: 751 IANATITQHNAGAYSSSMTFSTQNMDNSQNLNGLNSNGKLLVYGTTFTNQAKDGKFIFNA 810
Query: 911 KNISFSNASFSGFTNPGGSSVISANATNSLSFINSRLNGGAVYNLQANSLIFNNTQAVFN 970
+F N +F+ GGS S +SL+F N+ + + A + IFNN A FN
Sbjct: 811 GQATFENTNFN-----GGSYQFSG---DSLNFSNNNQFNSGSFEIGAKNTIFNN--ANFN 860
Query: 971 VLYSRGTSNFNATTQLLGNTNFTLSSQSLLNFNGDTTLQNNANITLGNKSQAAFKNSLTL 1030
S +N +ATT +G +FT ++ S L G+ N+ N G+++ A F N+ ++
Sbjct: 861 NSTSFNFNNSSATTSFVG--DFT-NANSNLQIAGNAVFGNSTN---GSQNTANFNNTGSV 914
Query: 1031 DNNSNLSLDNQSVLNANNTSAFNNQASLNIYNGSQATFNS-LFFNGGTLSLNASSKLNAS 1089
+ N + DN + NTS + + + N + N+ L F GT+ +A S +N
Sbjct: 915 NIAGNATFDNVVFNSPTNTSV---KGKVTLNNITLKNLNAPLSFGDGTIVFSAHSVINIG 971
Query: 1090 NASFSNNTTINLDDSVLSASNTSSLNAN----INFQGASQA-----DFGGNTIIDTASFN 1140
A +N I L S + + + N IN+QG + GN + D
Sbjct: 972 EA-ITNGNPITLVSSSKAIEYNDAFSKNLWQLINYQGHGASSEKLVSSAGNGVYDVV--- 1027
Query: 1141 FDSASSLNFNNLTANGALNFNGYTPSLTKALMSVSGQFVLGNNGDINLSDINIFDNITKS 1200
+FNN T N F+ + S+ + + + +V D+ SD + N
Sbjct: 1028 ------YSFNNQTYNFQEVFSPNSISIRRLGVGMVFDYV-----DMEKSDRLYYQNALGF 1076
Query: 1201 VTYNILNAQKGITGISGANGY----------EKILFYGMKIQNATYSDNNNI-----QTW 1245
+TY + + ++ Y K LF + N+ I W
Sbjct: 1077 MTYMPNSYNNNLGNLNNTIYYYDNSIDFYASGKTLFTKAEFSQTFTGQNSAIVFGAKNIW 1136
Query: 1246 SFINPLNSSQIIQESIKNGDLTIEVLNNPNSASNTIFNIAPELYNYQASKQNPTGYSYDY 1305
+ ++ S +I I+ GD N + SN + + +N Q +
Sbjct: 1137 TSVSDAPQSNVI---IRFGD-------NKGAGSN---DASGHCWNLQC-------IGFIT 1176
Query: 1306 SDNQAGTYYLTSNIKGLFTPKGSQTPQAPGTYSPFNQPLSSLNIYNKGFSSENLKTLLGI 1365
+A Y+T +I+ S I + G +S N L GI
Sbjct: 1177 GHYEAQKIYITGSIE------------------------SGNRISSGGGASLNFNGLQGI 1212
Query: 1366 LSQNSATLKEMIESNQLDNITNINEVLQLLDKIKITQVQKQALLETINHLTDNINQTFNN 1425
L N ATL Q ++ ++ + Q Q ++ N N +FN
Sbjct: 1213 LLTN-ATLYNRAAGTQSSSMNFVSNSANI-------QAQNSYFIDDTAQNKGNPNFSFNA 1264
Query: 1426 GNL---------IIGATQD----NVTNSTSSIWFGGNGYSSPCTLDSATCSSFRNTYLGQ 1472
NL +G TQ N N+ S + + SS A F N+ L
Sbjct: 1265 LNLDFSNSSFRGYVGQTQSVFKFNAVNAIS--FTNSSNLSSGLYQMQAKSVLFDNSNLSV 1322
Query: 1473 LLGSTSPYLGYINADFKAKSIYITGTIGSGNAFESGGSADVTFQSANNLVLNKANIEAQA 1532
+G++S IN A + + E G ++ S+ NL + N+ A
Sbjct: 1323 SVGTSSIKANAINLSQNASI-----NASNHSTLELQGDLNLNDTSSLNLNQSAINVSNNA 1377
Query: 1533 TDNIF-NLLGQKGIEKIFNQG---NLANVLSQVAMEKIKQAGGL---GNFIENALSPLSK 1585
T N + +L+ G FN N AN+ + ++ I G + G F + S L
Sbjct: 1378 TINDYASLIASNGSHLNFNGAVNFNSANITTSLSSSSIVFKGAVSLRGQFNLSNNSSLDF 1437
Query: 1586 ELPASLQNETLGQLIGQNNLDDLLNNSGVMNAIQNIISKKLSIFGNFVTPSIIENYLAKQ 1645
+ +++ + T N D+ + S + I LS+ GN + P+ + L +
Sbjct: 1438 QGSSAITSNT-----AFNFYDNAFSQSPITFHQALDIKVPLSLGGNLLNPN-NSSVLNLK 1491
Query: 1646 SLKSMLDDKGLLNFIGGYMNASELSS----ILSVVLKDITNPPTSLQKDIGVVANDLLNE 1701
+ + + D+G LN I S+L+ + +++ D+ G+ ND + +
Sbjct: 1492 NSQLVFSDQGSLN-IANIDLLSDLNGNKNRVYNIIQADMNGNWYERINFFGMRINDGIYD 1550
Query: 1702 FLGQDVIKKLESQGLVSNIINNI--ISQGGLSGVYNQGLGSVLPPSLQNALKE------N 1753
Q +N +NN I++ + + L + P ++N L N
Sbjct: 1551 AKNQTY--------SFTNPLNNALKITESFKNNQLSVTLSQI--PGIKNTLYNIGSEIFN 1600
Query: 1754 DLGTLLSPRGLHDFWQ--KGYFNFLSN--GYVFVNNS---SFSNATGGSLNFVANKSIIF 1806
+ G++ + +G F S+ GY N S S SN T + N + S+I
Sbjct: 1601 YQKVYNNANGVYSYSDDAQGVFYLTSSVKGYYNPNQSYQASGSNNTTKNNNLTSESSVIS 1660
Query: 1807 NGDNTIDFSKYQGALIFASNDVS-NINITTLNATNGLSL------------NAGLNNVSV 1853
N QG I A + + N + + A ++L + L+++S
Sbjct: 1661 QTYNA------QGNPISALHVYNKGYNFSNIKALGQMALKLYPEIKKILGNDFSLSSLSN 1714
Query: 1854 QKGEICVNLANCPTTKNSSSTNSSVTPTNESLSVRANNFTFLGAIASNGAIDLSQVKNNS 1913
KG+ L T + + N + N S+ NN T + GA + Q NS
Sbjct: 1715 LKGDALNQLTKLITPSDWKNINELIDNANNSVVQNFNNGTLI-----IGATKIGQTDTNS 1769
Query: 1914 VI 1915
+
Sbjct: 1770 AV 1771
Score = 135 bits (340), Expect = 1e-32
Identities = 309/1334 (23%), Positives = 493/1334 (36%), Gaps = 207/1334 (15%)
Query: 100 PNSPTHNSYCLFSSTQGSGTYYLNTLTTYSAGG-----ASFTQKFNN-------GTLNVG 147
PNS +N + + YY N++ Y++G A F+Q F G N+
Sbjct: 1081 PNSYNNN----LGNLNNTIYYYDNSIDFYASGKTLFTKAEFSQTFTGQNSAIVFGAKNIW 1136
Query: 148 EN----------IRFG---GTGINGGD--------VGYITGTYDAQTINFNSSHLTTGNS 186
+ IRFG G G N +G+ITG Y+AQ I S + +GN
Sbjct: 1137 TSVSDAPQSNVIIRFGDNKGAGSNDASGHCWNLQCIGFITGHYEAQKIYITGS-IESGNR 1195
Query: 187 YADGGGATLNFNAANNITINQASFDNSHAGTQKSYMNF--KGSNIKVSGSSFTDDT---D 241
+ GGGA+LNFN I + A+ N AGTQ S MNF +NI+ S F DDT
Sbjct: 1196 ISSGGGASLNFNGLQGILLTNATLYNRAAGTQSSSMNFVSNSANIQAQNSYFIDDTAQNK 1255
Query: 242 GGFSFSGNSNNSTISFNQTSF------NQGTYHFSNSATLSF-NHSAFNQGTYNFNSTQS 294
G +FS N+ N + F+ +SF Q + F+ +SF N S + G Y +
Sbjct: 1256 GNPNFSFNALN--LDFSNSSFRGYVGQTQSVFKFNAVNAISFTNSSNLSSGLYQMQAKSV 1313
Query: 295 AFNNS--AFNQGTYHFNGNASFDNDTFNQGTYSFNTSKVSFSGINTLNSSSPFASLKGSV 352
F+NS + + GT NA N + N + N S + G LN +S + ++
Sbjct: 1314 LFDNSNLSVSVGTSSIKANAI--NLSQNASINASNHSTLELQGDLNLNDTSSLNLNQSAI 1371
Query: 353 SFGSDAIFNLNQTLNNQTYDILTTNGAIQY---GVYQSYLWDLINYKGDKAISHVEVGNN 409
+ ++A N +L L NGA+ + + S I +KG A+S N
Sbjct: 1372 NVSNNATINDYASLIASNGSHLNFNGAVNFNSANITTSLSSSSIVFKG--AVSLRGQFNL 1429
Query: 410 TYDVTFDINGQDETLQET-FN------KQSIITQFLGDDLQ---------QQAQKTYQQD 453
+ + + D G T FN QS IT D++ + +
Sbjct: 1430 SNNSSLDFQGSSAITSNTAFNFYDNAFSQSPITFHQALDIKVPLSLGGNLLNPNNSSVLN 1489
Query: 454 LSNSQSALNNAASDNKIANSD--TDYTKNKNAT---IKKDAQGL---------ENTNQQI 499
L NSQ ++ S N IAN D +D NKN I+ D G N I
Sbjct: 1490 LKNSQLVFSDQGSLN-IANIDLLSDLNGNKNRVYNIIQADMNGNWYERINFFGMRINDGI 1548
Query: 500 AQDEQALQGDLDKLKQLANSPTGFSEQAFNQAQKQEQQDEQTLQ-------NEEKTFNSE 552
+ + L F + Q + TL N +K +N+
Sbjct: 1549 YDAKNQTYSFTNPLNNALKITESFKNNQLSVTLSQIPGIKNTLYNIGSEIFNYQKVYNN- 1607
Query: 553 QEGLKQAIQQAQAQQQKQQQKQEQQQAQQTYQEDLTHSQSALNDVASDNTIASNDTNYTN 612
G+ AQ + Q+YQ +++ + N++ S++++ S N
Sbjct: 1608 ANGVYSYSDDAQGVFYLTSSVKGYYNPNQSYQASGSNNTTKNNNLTSESSVISQTYNAQG 1667
Query: 613 NQNTAIKEDAQGLENTNQQIAQDEQALQGDLDKLKQLAN-----SPTGFSEQAFNQAQKQ 667
N +A+ +G +N + A + AL+ + K L N S + A NQ K
Sbjct: 1668 NPISALHVYNKGYNFSNIK-ALGQMALKLYPEIKKILGNDFSLSSLSNLKGDALNQLTKL 1726
Query: 668 EQQDEQTLQNEEKTFNSEQERLKQAIANAKPTSPTPSHAPTPTKHTAPNTPPNKVPPTPP 727
+ +N + ++ + Q N T T P
Sbjct: 1727 ITPSD--WKNINELIDNANNSVVQNFNNGTLIIGATKIGQTDTNSAVVFGGLGYQKPCDY 1784
Query: 728 TQNPPAESVWSGVYWLQNKTYSNKGIYYIDPNLSGQSGQSGNTLSTYTANLFGRSFSVNI 787
T + + G Y Q + + YID + + TL + A G S SV
Sbjct: 1785 TDIVCQK--FRGTYLGQLLESISADLGYIDTTFNAKEIYLTGTLGSGNAWGTGGSASVTF 1842
Query: 788 QNGTLIIGNNTESVNS--NGLI-WIGHGGFGYITGTFSAANIYLTNNFKTGEGVSNSDGG 844
+ T +I N V+S +G+ +G G + ANI + N GG
Sbjct: 1843 NSQTSLILNQANIVSSQTDGIFSMLGQEGINKVFNQAGLANIL----GEVAMQSINKAGG 1898
Query: 845 GANITFKASDNITMDGLNYNDAETVTKMIQTGASQHSYATFDALNNISVTNSSFSDMTWG 904
N+ + ++ G Y E + + Q++ FD L N S N++ D+
Sbjct: 1899 LGNLIVNTLGSDSVIG-GYLTPEQKNQTLSQLLGQNN---FDNLMNDSGLNTAIKDLI-- 1952
Query: 905 KFSFSAKNISFSNASFSGFTNPGGSSVISANATNSLSFINSRLNGGAVYNLQANSLIFNN 964
+ + F G GG + + IN L+ ++N + N+
Sbjct: 1953 -----RQKLGFWTGLVGGLAGLGGIDLQNPEKLIGSMSINDLLSKKGLFNQITGFISAND 2007
Query: 965 TQAVFNVLYSRGTSNFNATTQLLGNTNFTLSSQSLLNFNGDTTLQNNANITLGNKSQAAF 1024
V +V+ + + L N L Q + F G TL + ++ + ++
Sbjct: 2008 IGQVISVM----LQDIVKPSDALKNDVAALGKQMIGEFLGQDTLNSLESLLQNQQIKSVL 2063
Query: 1025 KNSLTLDNNSNL----------SLDNQSVLNANNTS--------AFNNQASLNIYNGSQA 1066
L ++ +L + + S +FN Q ++ + N +
Sbjct: 2064 DKVLAAKGLGSIYEQGLGDLIPNLGKKGIFAPYGLSQVWQKGDFSFNAQGNVFVQN---S 2120
Query: 1067 TFNSLFFNGGTLSLNASSKL---NASNASFSN---------NTTINLDDSVLSASNTSSL 1114
TF++ NGGTLS NA + L ++ +F+N N N++ ++L+ASN +
Sbjct: 2121 TFSNA--NGGTLSFNAGNSLIFAGNNHIAFTNHSGTLNLLSNQVSNINVTMLNASNGLKI 2178
Query: 1115 NANINFQGASQADFGGNTIID----------TASFN------FDSASSLNFNNLTANGAL 1158
NA N SQ GN I+ TAS ++ASS N +N A AL
Sbjct: 2179 NATNNNVSVSQ----GNLFINASCVQQSDPTTASATNPCTTAQNNASSSNASN-NAPIAL 2233
Query: 1159 NFNGYTPSLTKALMSVSGQFVLGNNGDINLSDINIFDNITKSVTYNILNAQKGITGISGA 1218
N N + +T + SG NG ++ S I N+ YN Q IS
Sbjct: 2234 NNNDESLVVTANGFNFSGNIYA--NGVVDFSKIKGSANVKNLYLYNNAQFQANNLTISNQ 2291
Query: 1219 NGYEKILFYGMKIQNATYSDNN-NIQTWSFINPLNSSQIIQE-------SIKNGDLTIEV 1270
EK NA++ NN NIQ N +++Q S+ G +EV
Sbjct: 2292 AVLEK---------NASFVTNNLNIQGAFNNNATQKIEVLQNLVIASNASLSTGIYGLEV 2342
Query: 1271 LNNPNSASNTIFNI 1284
N+ FN+
Sbjct: 2343 GGALNNLGAIHFNL 2356
Score = 101 bits (252), Expect = 2e-22
Identities = 299/1432 (20%), Positives = 517/1432 (35%), Gaps = 248/1432 (17%)
Query: 798 TESVNSNGLI---WIGHGGFGYITGTFSAANIYLTNNFKTGEG------VSNSDGG---G 845
T+ N LI W G Y S N +T N K G + N GG G
Sbjct: 78 TQQFTGNQLITKTWAGGNAANYY---HSQNNQDITANLKNDNGTYFLSGLYNYTGGEYNG 134
Query: 846 ANITFKASDNITMDGLNYNDAETVTKMIQTGASQHSYATFDALNNISVTNSSFSDMTWGK 905
N+ + N T + L + + T G H+ TF A I+V NS
Sbjct: 135 GNLDIELGSNATFN-LGASSGNSFTSWYPNG---HTDVTFSA-GTINVNNS--------- 180
Query: 906 FSFSAKNISFSNASFSGFTNPGGSSVISANA------TNSLSFINSRLNGG---AVYNLQ 956
+ N SG G++ ++ NA +N ++ S++N G +V +
Sbjct: 181 -------VEVGNRVGSGAGTHTGTATLNLNANKVTINSNISAYKTSQVNVGNANSVITIN 233
Query: 957 ANSLIFNNTQAVFNVLYSRGTSNFNATTQLLGNTNFTLSSQSLLNFNGDTTLQNNANITL 1016
+ SL + ++ V S + G TN T ++ S N +G T + NA +
Sbjct: 234 SVSLNGDTCSSLARVGVGANCSTSGPSYSFKGTTNATNTTFS--NSSGSFTFEENATFSG 291
Query: 1017 GNKSQAAFKNSLTLDNNSNLSLDNQSVLNANNTSAFN--NQASLNIYNGSQATFNSLFFN 1074
+ AF + + +N + ++ S TS+FN N ++ + +QATF + FN
Sbjct: 292 AKLNGGAFTFNKKFNATNNTAFNSGS-FTFKGTSSFNGANFSNASYTFNNQATFQNSSFN 350
Query: 1075 GGTLSLNASSKLNA-----SNASFSNNTT----INLDDSVLSASNTSSLNANINFQGASQ 1125
GGT + N + + N+SFS + T + + SN N +F A+
Sbjct: 351 GGTFTFNDQTNQSTQHPQIQNSSFSGSATTLKGFATFEQAFNNSNHQLTIQNASFNNATF 410
Query: 1126 ADFGGNTIIDTASFNFDSASS-LNFNNLTANGALNFNGYTPSLTKALMSVSGQFVLGNNG 1184
+ G TI ASFN S ++ ++ NN+T +G +++SG+ L N
Sbjct: 411 NNTGKITIEKDASFNNTSFNTPVDTNNMTISGG--------------VTLSGKNDLKNGA 456
Query: 1185 DINLSDINIFDNITKSVTYNI--LNAQKGITGISGANGYEKILFYGMKIQNATYSDNNNI 1242
++ I +T+ T+N+ L ++K +T ++ G + Y + +A S N +
Sbjct: 457 TLDFGSSKI--TLTQGTTFNLTSLGSEKSVTILNSRGG----ITYNHLLNHAINSLTNAL 510
Query: 1243 QT-WSFINPLNSSQIIQESIKNGDLTIEVLNNPNSASNTIFNIAPELYNYQASKQNPTGY 1301
+T S P + +Q + + I +T ++LN N+A++ + +P + +++ GY
Sbjct: 511 KTNESSSKPQSFAQGLWDMITYNGVTGQLLNE-NAATSKPTDSSPSKSSTNSTQVYQVGY 569
Query: 1302 SYDYSDNQAGTYYLTSNIKGLFTPKGSQTPQAPGTYSPFNQPLSSLNIYNKGFSSENLKT 1361
+ + + ++I G+ TP S F+ LS+ N N N K
Sbjct: 570 KIGDTIYKLQETFSHNSIIIQALESGTYTPPPVINGSKFD--LSASNYINADMPWYNHKY 627
Query: 1362 LLGILSQNSATLKEMIESNQLDNITNINEVLQLLDKIKITQVQKQALLETINHLTDNINQ 1421
+ SQN ES L ++I T++ Q
Sbjct: 628 YIP-KSQN------FTESG-----------TYYLPSVQIW-----------GSYTNSFKQ 658
Query: 1422 TF--NNGNLIIGATQDNVTNSTSSIWFGGNGYSSPCTLDSATCSSFRNTYLGQLLGSTSP 1479
TF +N NL+IG ++ W N SS T S N + G P
Sbjct: 659 TFSASNSNLVIG---------YNATWTDHNVSSSDTVAFGDTSGSALNGHCGPW-----P 704
Query: 1480 Y---LGYINADFKAKSIYITGTIGSGNAFESGGSADVTFQSANNLVLNKANI-------- 1528
Y G N + A +YIT + SGN +GG+A++ F +++ + A I
Sbjct: 705 YYQCTGTTNGTYSAYHVYITANLRSGNRIGTGGAANLIFNGVDSINIANATITQHNAGAY 764
Query: 1529 ------EAQATDNIFNLLGQKGIEKIF----------NQGNLANVLSQVAMEKIKQAGGL 1572
Q DN NL G K+ G Q E GG
Sbjct: 765 SSSMTFSTQNMDNSQNLNGLNSNGKLLVYGTTFTNQAKDGKFIFNAGQATFENTNFNGGS 824
Query: 1573 GNFIENALSPL------SKELPASLQNETLGQLIGQNNLDDLLNNSGV--------MNAI 1618
F ++L+ S +N N+ NNS NA
Sbjct: 825 YQFSGDSLNFSNNNQFNSGSFEIGAKNTIFNNANFNNSTSFNFNNSSATTSFVGDFTNAN 884
Query: 1619 QNIISKKLSIFGNFVTPS------------------IIENYLAKQSLKSMLDDKGLLNFI 1660
N+ ++FGN S +N + + + K LN I
Sbjct: 885 SNLQIAGNAVFGNSTNGSQNTANFNNTGSVNIAGNATFDNVVFNSPTNTSVKGKVTLNNI 944
Query: 1661 G--------GYMNASELSSILSVVL--KDIT--NPPTSLQKDIGVVANDLLNEFLGQDVI 1708
+ + + + S SV+ + IT NP T + + ND ++ L Q +
Sbjct: 945 TLKNLNAPLSFGDGTIVFSAHSVINIGEAITNGNPITLVSSSKAIEYNDAFSKNLWQLIN 1004
Query: 1709 KK---LESQGLVSNIINNIISQGGLSGVYNQGLGSVLPPSLQNALKENDLGTLLSPRGLH 1765
+ S+ LVS+ N + V P+ +++ +G + +
Sbjct: 1005 YQGHGASSEKLVSSAGNGVYDVVYSFNNQTYNFQEVFSPN-SISIRRLGVGMVFDYVDME 1063
Query: 1766 DFWQKGYFNFLSNGYVFVNNSSFSNATG----------GSLNFVAN-KSIIFNGDNTIDF 1814
+ Y N L G++ +S++N G S++F A+ K++ + + F
Sbjct: 1064 KSDRLYYQNAL--GFMTYMPNSYNNNLGNLNNTIYYYDNSIDFYASGKTLFTKAEFSQTF 1121
Query: 1815 SKYQGALIFASND----VSNINITTLNATNGLSLNAGLNNVSVQKGEI-CVNLANCPTTK 1869
+ A++F + + VS+ + + G + AG N+ S + C+
Sbjct: 1122 TGQNSAIVFGAKNIWTSVSDAPQSNVIIRFGDNKGAGSNDASGHCWNLQCIGFITGHYEA 1181
Query: 1870 NSSSTNSSVTPTNESLSVRANNFTFLGAIASNGAIDLSQVKNNSVIDTLNLNENAALQAN 1929
S+ N S + F G G + + N T + + N +
Sbjct: 1182 QKIYITGSIESGNRISSGGGASLNFNGL---QGILLTNATLYNRAAGTQSSSMNFVSNSA 1238
Query: 1930 NLTITNAFNNASNSTANINGNFTLNQQATLSTNASGLNVMG------NFNSYGDLVFNLS 1983
N+ N++ + N NF+ N +N+S +G FN+ + F S
Sbjct: 1239 NIQAQNSYFIDDTAQNKGNPNFSFNALNLDFSNSSFRGYVGQTQSVFKFNAVNAISFTNS 1298
Query: 1984 HSVSHAIINAQGSATIMANNNNPLIQFNTSSKEVGTYTLIDSAKAIYYGYNNQITGGS-- 2041
++S + Q + + N+N S VGT ++ A AI N I +
Sbjct: 1299 SNLSSGLYQMQAKSVLFDNSN--------LSVSVGTSSI--KANAINLSQNASINASNHS 1348
Query: 2042 --SLDNYLKLYTLIDIN-GKHMVMTDNGLTYNGQAVSVKDGGLVVGFKDSQN 2090
L L L +N + + N T N A + G + F + N
Sbjct: 1349 TLELQGDLNLNDTSSLNLNQSAINVSNNATINDYASLIASNGSHLNFNGAVN 1400
Score = 48.9 bits (115), Expect = 2e-06
Identities = 84/341 (24%), Positives = 126/341 (36%), Gaps = 75/341 (21%)
Query: 127 TYSAGGASFTQKF-----NNGTL--NVGENIRFGGTGINGGDVGYITGTYDAQTINFNSS 179
+++A G F Q N GTL N G ++ F G +I T + T+N S+
Sbjct: 2108 SFNAQGNVFVQNSTFSNANGGTLSFNAGNSLIFAGNN-------HIAFTNHSGTLNLLSN 2160
Query: 180 HLTTGNSYADGGGATLNFNAA-NNITINQ-----------------ASFDNSHAGTQKSY 221
++ N L NA NN++++Q AS N Q +
Sbjct: 2161 QVSNINVTMLNASNGLKINATNNNVSVSQGNLFINASCVQQSDPTTASATNPCTTAQNNA 2220
Query: 222 MNFKGSNIKVSGSSFTDD----TDGGFSFSGN-SNNSTISF---------------NQTS 261
+ SN + D+ T GF+FSGN N + F N
Sbjct: 2221 SSSNASNNAPIALNNNDESLVVTANGFNFSGNIYANGVVDFSKIKGSANVKNLYLYNNAQ 2280
Query: 262 FNQGTYHFSNSATLSFNHSAFNQGTYNFNSTQSAFNNSAFNQGTYHFNGNASFDNDTFNQ 321
F SN A L N S T N N Q AFNN+A Q N + +
Sbjct: 2281 FQANNLTISNQAVLEKNASFV---TNNLN-IQGAFNNNA-TQKIEVLQNLVIASNASLST 2335
Query: 322 GTYSF-------NTSKVSFSGINTLNSSSPFASLKGSVSFGSDAIFNLNQTL-NNQTYDI 373
G Y N + F+ N+ +P + G ++ + +N ++ N TY +
Sbjct: 2336 GIYGLEVGGALNNLGAIHFNLENSQTPVNPLIQVGGIINLNTTQTPFMNVSVANGGTYTL 2395
Query: 374 LTTNGAIQYGV----YQSY--LWDLINYKGDKAISHVEVGN 408
L ++ I Y + QSY L+ LIN G +H+E N
Sbjct: 2396 LKSSRYIDYNINPNSLQSYLKLYTLINING----NHIEEKN 2432
>ref|NP_223537.1| vacuolating cytotoxin [Helicobacter pylori J99]
Length = 1288
Score = 198 bits (504), Expect = 1e-51
Identities = 203/803 (25%), Positives = 332/803 (41%), Gaps = 111/803 (13%)
Query: 1808 GDNTIDFSKYQ-----GALIFASNDVS--NINITTLNA-TNGLSLNAGLNNVSVQKGEIC 1859
G NT+DFS LI AS +V+ N NI L TNG+S+ + +
Sbjct: 516 GFNTLDFSGVTDKVNINKLITASTNVAVKNFNINELIVKTNGISVGEYTHFSEDIGSQSR 575
Query: 1860 VNLANCPTTKNSSSTNSSVTPTNESLSVRANNFTFLGAIASNGAIDLSQVKNNSV----- 1914
+N T S + + E L + N+F + + D VKN +
Sbjct: 576 INTVRLETGTRSIFSGGVKFKSGEKLVI--NDFYY----SPWNYFDARNVKNVEITRKFA 629
Query: 1915 --------------IDTLNLNENAAL---QANNLTITNAFNNASNSTANINGNFTLNQQA 1957
+ L L +NA + Q +NLTI F N+ IN + A
Sbjct: 630 SSTPENPWGTSKLMFNNLTLGQNAVMDYSQFSNLTIQGDF---INNQGTINYLVRGGKVA 686
Query: 1958 TLSTNASGLNVMGN--------------FNSYGDLVFNLSHSVSHAIINAQGSATIMAN- 2002
TL+ + + N NS DL+ N H + A I G+ + N
Sbjct: 687 TLNVGNAAAMMFNNDIDSATGFYKPLIKINSAQDLIKNTEHVLLKAKIIGYGNVSTGTNG 746
Query: 2003 --NNNPLIQF--------NTSSKEVGTYTLIDSAKAIYYGYNNQITGGSSLDNYL----K 2048
N N QF N + + D KA NQ + DNY K
Sbjct: 747 ISNVNLEEQFKERLALYNNNNRMDTCVVRNTDDIKACGMAIGNQSMVNNP-DNYKYLIGK 805
Query: 2049 LYTLIDINGKHMVMTDNG----LTYNGQAVSVKDGGLVVGF--KDSQNQYIYTSILYNKV 2102
+ I I+ T NG + Y G + ++GG + N + L
Sbjct: 806 AWRNIGIS-----KTANGSKISVYYLGNSTPTENGGNTTNLPTNTTNNAHSANYALVKNA 860
Query: 2103 KIAVSNDP----INNLQAPTLKQYIAQIQGTQGVDSIDQAGGSQAINWLNKIFETKGSPL 2158
A S P IN T++ ++ +D++ G+Q + L +
Sbjct: 861 PFAHSATPNLVAINQHDFGTIESVFELANRSKDIDTLYTHSGAQGRDLLQTLLIDSHDAG 920
Query: 2159 FAPYYLESHSTKDLTTIAGDIANTLEVIANPNFKNDATNILQINTYTQQMSRLAKLSDTS 2218
+A +++ ST ++T + L +A+ K L ++ SRL LS
Sbjct: 921 YARQMIDNTSTGEITKQLNAATDALNNVASLEHKQSGLQTLSLSNAMILNSRLVNLSRKH 980
Query: 2219 TFASADFHERLEALKNKRFADAIPNAMDVILKYSQRNRVKNNVWATGVGGASFINGGTGT 2278
T F +RL+ALK + FA ++ +A +V+ +++ + NVWA +GGAS +G +
Sbjct: 981 TNHINSFAQRLQALKGQEFA-SLESAAEVLYQFAPKYEKPTNVWANAIGGASLNSGSNAS 1039
Query: 2279 LYGINVGYDRFIKG---VIVGGYAAYGYSGF--HANITQSGSSNVNMGVYSRAFIKRSEL 2333
LYG + G D F+ G IVGG+ +YGYS F AN SG++N N GVYSR F + E
Sbjct: 1040 LYGTSAGVDAFLNGNVEAIVGGFGSYGYSSFSNQANSLNSGANNANFGVYSRFFANQHEF 1099
Query: 2334 TMSLNETWGYNKTFINSYDPLLSIINQSYKYDTWTTDAKINYGYDFMFKDKSVIFKPQIG 2393
G +++ +N LL +NQSY Y ++ A+ +YGYDF F +++ KP +G
Sbjct: 1100 DFEAQGALGSDQSSLNFKSTLLQDLNQSYNYLAYSATARASYGYDFAFFRNALVLKPSVG 1159
Query: 2394 LAYYYIGLSGLRGIMDDPIYNQFRANADPNKKSVLTINFALESRHYFNKNSYYFVIADVG 2453
++Y ++G + + +Q + + + N +E+R+Y+ SY+++ A V
Sbjct: 1160 VSYNHLGSTNFKSNSQ----SQVALKNGASSQHLFNANANVEARYYYGDTSYFYLHAGVL 1215
Query: 2454 RDLFINSMGDKMVRFIGNNTLSYRDGGRYN-------TFASIITGGEIRLFKTFYVNAGI 2506
++ G+N ++ + + N T+A + GGE++L K ++N G+
Sbjct: 1216 QEF----------AHFGSNDVASLNTFKINAARSPLSTYARAMMGGELQLAKEVFLNLGV 1265
Query: 2507 GARFGLDYKDINITGNIGMRYAF 2529
L + N+GMRY+F
Sbjct: 1266 VYLHNLISNASHFASNLGMRYSF 1288
Score = 40.8 bits (94), Expect = 4e-04
Identities = 77/306 (25%), Positives = 115/306 (37%), Gaps = 22/306 (7%)
Query: 177 NSSHLTT---GNSYADGGGATLNFNAAN-NITINQASFDNSHAGTQKSYMNFKGSNIKVS 232
N HL T G G A+L NAA+ NI + N +G N G NI V
Sbjct: 392 NIFHLNTKADGTIKVGGFKASLTTNAAHLNIGKGGVNLSNQASGRTLLVENLTG-NITVD 450
Query: 233 GSSFTDDTDGGFSFSGNSNNSTISFNQTSFNQGTYHFSNSATLS-FNHSAFNQGTYNFNS 291
G ++ GG++ +G+S N + N GT F+N +L F + + T NF
Sbjct: 451 GPLRVNNQVGGYALAGSSANFEFKAGVDTKN-GTATFNNDISLGRFVNLKVDAHTANFKG 509
Query: 292 TQSA---FNNSAFNQGTYHFNGNASFDNDTFNQGTYSFNTSKVSFSGINTLNSSSPFASL 348
+ FN F+ T N N T N +FN +++ I N S
Sbjct: 510 IDTGNGGFNTLDFSGVTDKVNINKLITAST-NVAVKNFNINEL----IVKTNGISVGEYT 564
Query: 349 KGSVSFGSDAIFNLNQTLNNQTYDILTTNGAIQYG---VYQSYLWDLINYKGDKAISHVE 405
S GS + N + L T I + + G V + + NY + + +VE
Sbjct: 565 HFSEDIGSQSRINTVR-LETGTRSIFSGGVKFKSGEKLVINDFYYSPWNYFDARNVKNVE 623
Query: 406 VGNNTYDVTFDINGQDETLQETFNKQSIITQFLGDDLQQQAQKTYQQDLSNSQSALNNAA 465
+ T + L FN ++ Q D Q + T Q D N+Q +N
Sbjct: 624 ITRKFASSTPENPWGTSKLM--FNNLTL-GQNAVMDYSQFSNLTIQGDFINNQGTINYLV 680
Query: 466 SDNKIA 471
K+A
Sbjct: 681 RGGKVA 686
Score = 39.7 bits (91), Expect = 0.001
Identities = 48/199 (24%), Positives = 77/199 (38%), Gaps = 13/199 (6%)
Query: 198 NAANNITINQASFDNSHAGTQKSYMNFKGSNIKVSGSSFTDDTDGGFSFSGNSNNSTISF 257
NA ++N S + S GT F N++ F + G SFS +N+
Sbjct: 1025 NAIGGASLNSGS-NASLYGTSAGVDAFLNGNVEAIVGGF--GSYGYSSFSNQANSLNSGA 1081
Query: 258 NQTSFNQGTYHFSNSATLSFNHSAF---NQGTYNFNSTQSAFNNSAFNQGTYHFNGNASF 314
N +F + F+N F +Q + NF ST N ++N Y AS+
Sbjct: 1082 NNANFGVYSRFFANQHEFDFEAQGALGSDQSSLNFKSTLLQDLNQSYNYLAYSATARASY 1141
Query: 315 DND--TFNQGTYSFNTSKVSFSGINTLN---SSSPFASLKGSVSFGSDAIFNLNQTLNNQ 369
D F + VS++ + + N +S +LK S S +FN N + +
Sbjct: 1142 GYDFAFFRNALVLKPSVGVSYNHLGSTNFKSNSQSQVALKNGAS--SQHLFNANANVEAR 1199
Query: 370 TYDILTTNGAIQYGVYQSY 388
Y T+ + GV Q +
Sbjct: 1200 YYYGDTSYFYLHAGVLQEF 1218
Score = 39.7 bits (91), Expect = 0.001
Identities = 53/251 (21%), Positives = 89/251 (35%), Gaps = 34/251 (13%)
Query: 111 FSSTQGSGTYYLNTLTTYSAGGASFTQKFNNGTLNVGENIRFGGTGINGGDVGYITGTYD 170
F+S + + Y + +LN G N GT + G ++ G +
Sbjct: 999 FASLESAAEVLYQFAPKYEKPTNVWANAIGGASLNSGSNASLYGT--SAGVDAFLNGNVE 1056
Query: 171 AQTINFNSSHLTTGNSYADG---GGATLNFNAANNITINQASFD---NSHAGTQKSYMNF 224
A F S ++ ++ A+ G NF + NQ FD G+ +S +NF
Sbjct: 1057 AIVGGFGSYGYSSFSNQANSLNSGANNANFGVYSRFFANQHEFDFEAQGALGSDQSSLNF 1116
Query: 225 KGSNIKVSGSSF-------TDDTDGGFSFS------------GNSNNSTISFNQTSFNQG 265
K + ++ S+ T G+ F+ G S N S N S +Q
Sbjct: 1117 KSTLLQDLNQSYNYLAYSATARASYGYDFAFFRNALVLKPSVGVSYNHLGSTNFKSNSQS 1176
Query: 266 TYHFSNSATLS--FNHSAFNQGTYNFNSTQSAFNNSAFNQGTYHFNGNASFDNDTFNQGT 323
N A+ FN +A + Y + T + ++ Q HF ND + T
Sbjct: 1177 QVALKNGASSQHLFNANANVEARYYYGDTSYFYLHAGVLQEFAHFG-----SNDVASLNT 1231
Query: 324 YSFNTSKVSFS 334
+ N ++ S
Sbjct: 1232 FKINAARSPLS 1242
Score = 32.0 bits (71), Expect = 0.21
Identities = 147/743 (19%), Positives = 258/743 (33%), Gaps = 190/743 (25%)
Query: 761 SGQSGQSGNTLSTYTAN---LFGRSFSVNIQNG-TLIIGNNTESVNSNGLIWIGHGGF-- 814
SG ++ +T+ T A+ ++ +++ +G TL + +N SV NG +W+G +
Sbjct: 209 SGAGRKASSTVLTLQASEGITSSKNAEISLYDGATLNLASN--SVKLNGNVWMGRLQYVG 266
Query: 815 GYITGTFSAANIYLTNNFKTGEGVSNSDGGGANITFKASDNI---TMD-----GLN---- 862
Y+ ++S N ++ D A AS+ T+D GLN
Sbjct: 267 AYLAPSYSTINTSKVQGEVDFNHLTVGDQNAAQAGIIASNKTHIGTLDLWQSAGLNIIAP 326
Query: 863 ----YND------AETVTKMIQTGASQHSYATFDALN---NISVTNSSFSDMTWGKFSF- 908
Y D +++ TK + SQ++ + + +N N T + + + G F+
Sbjct: 327 PEGGYKDKPNSTTSQSGTKNDKKEISQNNNSNTEVINPPNNTQKTETEPTQVIDGPFAGG 386
Query: 909 --SAKNISFSNASFSGFTNPGGSSVISANATNSLSFINSRLNGGAVYNLQANSLIFNNTQ 966
+ NI N G GG A+ T + + +N GG + QA+ T
Sbjct: 387 KDTVVNIFHLNTKADGTIKVGG---FKASLTTNAAHLNIG-KGGVNLSNQASG----RTL 438
Query: 967 AVFNVLYSRGTSNFNATTQLLGNTNFTLSSQSLLNFNGDTTLQNNANITLGNKSQAAFKN 1026
V N+ T N L N + +L + + + + G A F N
Sbjct: 439 LVENL-----TGNITVDGPL--RVNNQVGGYALAGSSANFEFKAGVDTKNGT---ATFNN 488
Query: 1027 SLTLDNNSNLSLDNQSVLNANNTSAFNNQASLNIYNGSQATFNSLFFNGGTLSLNASSKL 1086
++L NL +D + N ++ NG FN+L F+G T +N + +
Sbjct: 489 DISLGRFVNLKVDAHTA----------NFKGIDTGNGG---FNTLDFSGVTDKVNINKLI 535
Query: 1087 NASNASFSNNTTIN----------------LDDSVLSASNTSSLNANIN----FQGASQA 1126
AS N IN + + S S +++ F G +
Sbjct: 536 TASTNVAVKNFNINELIVKTNGISVGEYTHFSEDIGSQSRINTVRLETGTRSIFSGGVKF 595
Query: 1127 DFGGNTIIDTASFN----FDS----------------------ASSLNFNNLT--ANGAL 1158
G +I+ ++ FD+ S L FNNLT N +
Sbjct: 596 KSGEKLVINDFYYSPWNYFDARNVKNVEITRKFASSTPENPWGTSKLMFNNLTLGQNAVM 655
Query: 1159 NFNGYTPSLTKALMSVSGQFVLGNNGDIN------------------------------- 1187
+++ ++ +++ G F+ N G IN
Sbjct: 656 DYSQFSN------LTIQGDFI-NNQGTINYLVRGGKVATLNVGNAAAMMFNNDIDSATGF 708
Query: 1188 ---LSDINIFDNITKSVTYNIL--------NAQKGITGISGANGYEKILFYGMKIQNATY 1236
L IN ++ K+ + +L N G GIS N E+ K + A Y
Sbjct: 709 YKPLIKINSAQDLIKNTEHVLLKAKIIGYGNVSTGTNGISNVNLEEQ-----FKERLALY 763
Query: 1237 SDNNNIQTWSFINPLNSSQIIQESIKNGDLTIEVLNNPNSASNTIFNIAPELYNYQASKQ 1296
++NN + T N + IK + I N + +N P+ Y Y K
Sbjct: 764 NNNNRMDTCVVRN--------TDDIKACGMAI---GNQSMVNN------PDNYKYLIGKA 806
Query: 1297 -NPTGYSYDYSDNQAGTYYLTSNIKGLFTPKGSQTPQAPGTYSPFNQPLSSLNIYNKGFS 1355
G S + ++ YYL ++ T G T P + + + N F+
Sbjct: 807 WRNIGISKTANGSKISVYYLGNSTP---TENGGNTTNLPTNTTNNAHSANYALVKNAPFA 863
Query: 1356 SENLKTLLGILSQNSATLKEMIE 1378
L+ I + T++ + E
Sbjct: 864 HSATPNLVAINQHDFGTIESVFE 886
>ref|NP_223801.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 1237
Score = 69.3 bits (168), Expect = 1e-12
Identities = 215/999 (21%), Positives = 339/999 (33%), Gaps = 141/999 (14%)
Query: 355 GSDAIFNLNQTLNNQTYDILTTNGAIQYGVYQSYLWDLINYKGDKAISHV---EVGNNTY 411
G+ N Q L NQ T AI + L L + A+ + VGN
Sbjct: 34 GTQQFINNKQLLENQNIINSITQSAINIAGPTTGLITLSSQTVIDALGYGVSNTVGNQLE 93
Query: 412 DVTFDIN--GQDETLQETFNKQSIITQFLG-----DDLQQQAQKTYQQDLSNSQSALNN- 463
++ +N G+ + + SI Q +G D L+ + + + LSN+QSA +
Sbjct: 94 GISNILNQIGKRKDFYSSRQISSISQQIIGLKGSSDPLKAHSSQITAKLLSNTQSAFDQG 153
Query: 464 -AASDNKIANSDTDYTKNKNATIKKDAQGLENTNQQIAQDEQALQGDLDKLKQLANSPTG 522
A S N I+ ++ N + +K L+NT Q +A+ L+Q+ +S T
Sbjct: 154 IALSSNIISAVNSLNPSNNSQEVKAQ---LQNTAQSMAE----------LLQQIEHSITK 200
Query: 523 FSEQAFNQAQKQEQQDEQTLQNEEKTFNSEQEGLKQAIQQAQAQQQKQQQKQEQQQAQQT 582
+ + Q+ D + T+ S + Q
Sbjct: 201 TTSTTYAQSLLSNLTDAVNASSNNTTYVSALVNALNTLGVGVFPTTTSTHVVLNPPGQVV 260
Query: 583 YQEDLTHSQSALNDVASDNTIASNDTNYTNNQNTAIKEDAQGLENTNQQ-----IAQDEQ 637
+ + S L +S N N NT + QG +TN Q A Q
Sbjct: 261 FYP----TNSLLGSTSS------NSNNQQQYNNTLLMNTLQGELSTNNQNNPNGCANQIQ 310
Query: 638 ALQGDLDKLKQLANSPTGFSEQAFNQAQKQEQQDEQTLQN-------------------- 677
L+ + L LA +PT + NQA +Q Q Q LQ+
Sbjct: 311 CLEQFIQNLTPLAATPT-----STNQANQQVQAIAQKLQSVAINALDNNAINNTTYNLNN 365
Query: 678 --EEKTFNSEQERLKQAIANAKPTSPTPSHAPTPTKHTAPNTPPNKVPPTPPTQNPPAES 735
F + Q ++Q K S P N QN A
Sbjct: 366 LHNALNFQAYQSTIEQYNNALKQISWISFSEPKNLLKNTSNNYQIGTVTNDQGQNISAYD 425
Query: 736 VWSGVYWLQNKTYSNKGIYYIDPNLSGQSGQSGNTLSTYTANLFGRSFSVNIQNGTLIIG 795
S L + S +S + S N +++ +L S V NG IG
Sbjct: 426 CTSATGSLSSDASSG---------ISCSATSSTNNTNSFDNSLVATS-KVQTINGKEQIG 475
Query: 796 NNTESVNSNGLIWIGHGGFGYITGTFSA-ANIYLTNNFKTGEGVSNSDGGGANITFKAS- 853
N S N +W + A I N ++G NS GG +I+ A
Sbjct: 476 VN--SFNLVSQVWSVYNSLKTSEENLQKNAKILCNNGSQSGTSPCNSSSGGLSISGNAQL 533
Query: 854 DNITMDGLNYNDAETVTKMIQTGASQHSYATFDALNNISVTNSSFSDMTWGKFSFSAKNI 913
NI L+ + T ++ AS+ L + + N+ T S
Sbjct: 534 QNI----LSPTNGTTTNTQAKSNASK--------LKAMVMVNNEEEAKTTNFNQSSGPTT 581
Query: 914 SFSNASFSGFTNPGGSSVISANATNSLSFINSRLNGGAVYNLQANSLIFNNTQAVFNVLY 973
SN++ G N + N +N I S A N + NN QA N LY
Sbjct: 582 QSSNSTVMGALN-----TVLQNVSNFQQSIQS-----AFQNQE------NNIQAWANALY 625
Query: 974 SRGTSNFNATTQLLGNTNFTLSSQSLLNFNGDTTLQNNANITLGNKSQAAFKNSLTLDNN 1033
+ N N + L N N L Q NF L N N + A L N
Sbjct: 626 NTSNPNGNQSQNLTTNNNQDLRIQLRANF---YQLINTINQQVPTDMNA-------LINQ 675
Query: 1034 SNLSLDNQSVLNANNTSAFNNQASLNIYNGSQATFNSLFFNGGTLSLNASSKLNASN-AS 1092
S + + N + + S + Q + + +++G +L ++ N +S
Sbjct: 676 SQQTQQTSGSASTTNNACASGMGSSGNWCYQQWSDSKAYYSGLQSALGYQTQATTQNGSS 735
Query: 1093 FSNNTTINLDDSVLSA--------SNTSSLNANIN----FQGASQADFGGNTIIDTASFN 1140
+N T N+ L++ +N S+N N G SQ + + D +
Sbjct: 736 GGSNITYNVQQITLTSGGLLNQIITNLKSVNGGSNGGSSGNGTSQINTAYQMLTDASDGK 795
Query: 1141 FDSASSLNFNNLTANGALNFNGYTP-SLTKALMSVSGQFVLGNNGDINLSDINIFDNITK 1199
+ +S N +N + +G N NGYTP + T SG N N + +
Sbjct: 796 LGTYNSSNSSNSSNSG--NNNGYTPCNSTNGSNGTSGSNCYEPNKQQNATTATTTTDSNL 853
Query: 1200 SVTYNILNAQKGITGISGANGYEKILFYGMK-IQNATYSDNNNIQTWSFINPLNSSQIIQ 1258
YN +AQK I I ++G K + G+K A S+++++ SS
Sbjct: 854 QKVYN--DAQK-IANIIASSGNNKGVENGLKQFFEALKSNSSSLSNLCGNGSSGSSSTCS 910
Query: 1259 ESIKNGDLTIEVLNNPNSASNTIFNIAPELYNYQASKQN 1297
+ N L + N S +N + N+ E QN
Sbjct: 911 GGLIN--LLGAIPTNGVSDTNNLINLLTEFIKTAGFIQN 947
Score = 65.9 bits (159), Expect = 1e-11
Identities = 238/1167 (20%), Positives = 410/1167 (34%), Gaps = 235/1167 (20%)
Query: 976 GTSNFNATTQLLGNTNFTLS-SQSLLNFNGDTT-------------LQNNANITLGNKSQ 1021
GT F QLL N N S +QS +N G TT L + T+GN+ +
Sbjct: 34 GTQQFINNKQLLENQNIINSITQSAINIAGPTTGLITLSSQTVIDALGYGVSNTVGNQLE 93
Query: 1022 AAFKNSLT-------LDNNSNLSLDNQSVLNANNTS----AFNNQASLNIYNGSQATFNS 1070
N L ++ +S +Q ++ +S A ++Q + + + +Q+ F+
Sbjct: 94 G-ISNILNQIGKRKDFYSSRQISSISQQIIGLKGSSDPLKAHSSQITAKLLSNTQSAFDQ 152
Query: 1071 LFFNGGTLSLNASSKLNASNASFSNNTTINLDDSVLSASNTSSLNANINFQGASQADFGG 1130
G LS N S +N+ N S +N+ + A + S A+
Sbjct: 153 ----GIALSSNIISAVNSLNPS----------------NNSQEVKAQLQNTAQSMAELLQ 192
Query: 1131 ---NTIIDTASFNFDSASSLNFNNLT--ANGALNFNGYTPSLTKALMSVSGQFVLGNNGD 1185
++I T S + A SL +NLT N + N Y +L AL
Sbjct: 193 QIEHSITKTTSTTY--AQSL-LSNLTDAVNASSNNTTYVSALVNAL-------------- 235
Query: 1186 INLSDINIFDNITKSVTYNILNAQKGITGISGANGYEKILFYGMK-IQNATYSDNNNIQT 1244
N + +F T T+ +LN +++FY + +T S++NN Q
Sbjct: 236 -NTLGVGVFPTTTS--THVVLNPPG------------QVVFYPTNSLLGSTSSNSNNQQQ 280
Query: 1245 WSFINPLNSSQIIQESIKNGDLTIEVLNNPNSASNTIFNIAPELYNYQASKQNPTGYSYD 1304
++ +N+ Q G+L+ NNPN +N I + + N PT +
Sbjct: 281 YNNTLLMNTLQ--------GELSTNNQNNPNGCANQIQCLEQFIQNLTPLAATPTSTNQA 332
Query: 1305 YSDNQAGTYYLTS----------------NIKGLFTPKGSQTPQAPGTYSPFNQPLSSL- 1347
QA L S N+ L Q Q+ T +N L +
Sbjct: 333 NQQVQAIAQKLQSVAINALDNNAINNTTYNLNNLHNALNFQAYQS--TIEQYNNALKQIS 390
Query: 1348 ------------------------NIYNKGFSSENLKTLLGILSQNSATLKEMIESNQLD 1383
N + S+ + + G LS ++++ ++ +
Sbjct: 391 WISFSEPKNLLKNTSNNYQIGTVTNDQGQNISAYDCTSATGSLSSDASSGISCSATSSTN 450
Query: 1384 NITNINEVLQLLDKIKITQVQKQALLETINHLTDNINQTFNNGNLIIGATQDNVTNSTSS 1443
N + + L K++ ++Q + + N L + +N+ + +++N+ +
Sbjct: 451 NTNSFDNSLVATSKVQTINGKEQIGVNSFN-LVSQVWSVYNS----LKTSEENLQKNAKI 505
Query: 1444 IWFGGN-GYSSPCTLDSATCSSFRNTYLGQLL----GSTSPYLGYINADFKAKSIYITGT 1498
+ G+ +SPC S S N L +L G+T+ NA K K++ +
Sbjct: 506 LCNNGSQSGTSPCNSSSGGLSISGNAQLQNILSPTNGTTTNTQAKSNAS-KLKAMVMVNN 564
Query: 1499 IGSGNAFESGGSADVTFQSANNLVLNKANIEAQATDNIFNLLGQKGIEKIFNQGNLANVL 1558
S+ T QS+N+ V+ N Q N Q+ I+ F N N +
Sbjct: 565 EEEAKTTNFNQSSGPTTQSSNSTVMGALNTVLQNVSNF-----QQSIQSAFQ--NQENNI 617
Query: 1559 SQVAMEKIKQAGGLGNFIENALSPLSKELPASLQNE------TLGQLIGQNNLDDLLNNS 1612
A + GN +N + +++L L+ T+ Q + +++ L+N S
Sbjct: 618 QAWANALYNTSNPNGNQSQNLTTNNNQDLRIQLRANFYQLINTINQQV-PTDMNALINQS 676
Query: 1613 -------GVMNAIQNIISKKLSIFGNFVTPSIIENYLAKQSLKSMLDDKGLLNFIGGYMN 1665
G + N + + GN+ ++ L+S L + N
Sbjct: 677 QQTQQTSGSASTTNNACASGMGSSGNWCYQQWSDSKAYYSGLQSALGYQTQATT----QN 732
Query: 1666 ASELSSILSVVLKDITNPPTSLQKDIGVVANDLLNEFLGQDVIKKLESQGLVSNIINNII 1725
S S ++ ++ IT L S GL++ II N+
Sbjct: 733 GSSGGSNITYNVQQIT-----------------------------LTSGGLLNQIITNLK 763
Query: 1726 SQGGLSGVYNQGLGSVLPPSLQNALKENDLGTLLSPRGLHDFWQKGYFNFLSNGYVFVNN 1785
S G S + G G+ + L + G L + + N +NGY N+
Sbjct: 764 SVNGGSNGGSSGNGTSQINTAYQMLTDASDGKLGTYNSSNSSNSSNSGN--NNGYTPCNS 821
Query: 1786 SSFSNATGGSLNFVANKSIIFNGDNTIDFSKYQGALIFASNDVSNINITTLNATNGLSLN 1845
++ SN T GS + NK T S Q ND I ++ N +
Sbjct: 822 TNGSNGTSGSNCYEPNKQQNATTATTTTDSNLQKVY----NDAQKIANIIASSGNNKGVE 877
Query: 1846 AGLNNVSVQKGEICVNLANCPTTKNSSSTNSSVTPTNESLSVRANNFTFLGAIASNGAID 1905
GL +L+N N SS +SS + LGAI +NG D
Sbjct: 878 NGLKQFFEALKSNSSSLSN--LCGNGSSGSSS--------TCSGGLINLLGAIPTNGVSD 927
Query: 1906 LSQ--------VKNNSVIDTLNLNENAALQANNLTITNAFNNASNSTAN---INGNFTLN 1954
+ +K I + N + +L + IT+A + + N N TL
Sbjct: 928 TNNLINLLTEFIKTAGFIQNKDSNVSTSLTSAFQAITSAISQGFQALQNDISPNAILTLL 987
Query: 1955 QQATLSTNASGLNVMGNFNSYGD-LVFNLSHSVSHAIINAQGSATIMANNNNPLIQFNTS 2013
Q+ T +T GD F + + A+INA+ N N N
Sbjct: 988 QEITSNTTTIQSFSQTLRQLLGDKTFFMVQQKLIDAMINARNQVQNAQNQAN-----NYG 1042
Query: 2014 SKEVGTYTLIDSAKAIYYGYNNQITGG 2040
S+ V + +AK+ +G +N + G
Sbjct: 1043 SQPV--LSQYAAAKSTQHGMSNGLGVG 1067
Score = 53.5 bits (127), Expect = 7e-08
Identities = 148/689 (21%), Positives = 237/689 (33%), Gaps = 116/689 (16%)
Query: 91 SYQDNIESGPNSPTHNSYCLFSSTQGSGTYYLNTLTTYSAGGASFTQKFNNGTLNVGENI 150
+YQ IE N+ S+ FS + NT Y G + Q N +
Sbjct: 374 AYQSTIEQYNNALKQISWISFSEPKN---LLKNTSNNYQIGTVTNDQGQNISAYDCTSAT 430
Query: 151 RFGGTGINGGDVGYITGTYDAQTINFNSSHLTTGNSYADGGGATLNFNAANNITINQASF 210
+ + G T + + T +F++S + T G + N+ N ++ + +
Sbjct: 431 GSLSSDASSGISCSATSSTN-NTNSFDNSLVATSKVQTINGKEQIGVNSFNLVSQVWSVY 489
Query: 211 DNSHAGTQKSYMNFK--GSNIKVSGSSFTDDTDGGFSFSGNS--------NNSTISFNQ- 259
++ + N K +N SG+S + + GG S SGN+ N T + Q
Sbjct: 490 NSLKTSEENLQKNAKILCNNGSQSGTSPCNSSSGGLSISGNAQLQNILSPTNGTTTNTQA 549
Query: 260 ---------------------TSFNQG---TYHFSNSATLSFNHSAFNQGTYNF-NSTQS 294
T+FNQ T SNS + ++ Q NF S QS
Sbjct: 550 KSNASKLKAMVMVNNEEEAKTTNFNQSSGPTTQSSNSTVMGALNTVL-QNVSNFQQSIQS 608
Query: 295 AFNNSAFN--------QGTYHFNGNASFDNDTFNQGTYSFNTSKVSFSGINTLNSSSPFA 346
AF N N T + NGN S + T N + INT+N P
Sbjct: 609 AFQNQENNIQAWANALYNTSNPNGNQSQNLTTNNNQDLRIQLRANFYQLINTINQQVP-- 666
Query: 347 SLKGSVSFGSDAIFNLNQTLNNQTYDILTTNGAIQYGVYQSYLWDLINYKGDKAI---SH 403
+A+ N +Q + TTN A G+ S W + KA
Sbjct: 667 -------TDMNALINQSQQTQQTSGSASTTNNACASGMGSSGNWCYQQWSDSKAYYSGLQ 719
Query: 404 VEVGNNTYDVTFDINGQDETLQETFNKQSIITQFLGDDLQQQAQKTYQQDLSNSQSALNN 463
+G T T NG T+N Q IT G L Q +L + N
Sbjct: 720 SALGYQTQATT--QNGSSGGSNITYNVQQ-ITLTSGGLLNQ-----IITNLKSVNGGSNG 771
Query: 464 AASDNKIANSDTDYTKNKNATIKKDAQGLENTNQQIAQDEQALQGDLDKLKQL--ANSPT 521
+S N + +T Y +A+ K G N++ +N +
Sbjct: 772 GSSGNGTSQINTAYQMLTDASDGK--LGTYNSSNSSNSSNSGNNNGYTPCNSTNGSNGTS 829
Query: 522 GFSEQAFNQAQKQEQQDEQTLQNEEKTFNSEQ------------EGLKQAIQQAQAQQQK 569
G + N+ Q T N +K +N Q +G++ ++Q +
Sbjct: 830 GSNCYEPNKQQNATTATTTTDSNLQKVYNDAQKIANIIASSGNNKGVENGLKQFFEALKS 889
Query: 570 QQQKQEQQQAQQTYQEDLTHSQSALNDVASDNTIASNDTNYTNNQNTAIKEDAQGLENTN 629
+ T S +N + + T +DTN N T + A ++N +
Sbjct: 890 NSSSLSNLCGNGSSGSSSTCSGGLINLLGAIPTNGVSDTNNLINLLTEFIKTAGFIQNKD 949
Query: 630 QQ---------------IAQDEQALQGD------LDKLKQLANSPTGFSEQAFNQAQKQE 668
I+Q QALQ D L L+++ ++ T + Q+F+Q +Q
Sbjct: 950 SNVSTSLTSAFQAITSAISQGFQALQNDISPNAILTLLQEITSNTT--TIQSFSQTLRQL 1007
Query: 669 QQDEQTLQNEEKTFNSEQERLKQAIANAK 697
D KTF Q++L A+ NA+
Sbjct: 1008 LGD--------KTFFMVQQKLIDAMINAR 1028
Score = 45.1 bits (105), Expect = 2e-05
Identities = 154/767 (20%), Positives = 263/767 (34%), Gaps = 125/767 (16%)
Query: 363 NQTLNNQTYDILTTNGAIQYGVYQSYLWDLINYKGDKAISHVEVGNNTYDVTFDINGQDE 422
N +NN TY++ + A+ + YQS + N K IS + +
Sbjct: 353 NNAINNTTYNLNNLHNALNFQAYQSTIEQYNN--ALKQISWI-----------SFSEPKN 399
Query: 423 TLQETFNKQSIITQFLGDDLQQQAQKTYQQDLSNSQSALNNAASDNKIANSDTDYTKNKN 482
L+ T N I G Q Q D +++ +L++ AS I+ S T T N N
Sbjct: 400 LLKNTSNNYQI-----GTVTNDQGQNISAYDCTSATGSLSSDASSG-ISCSATSSTNNTN 453
Query: 483 ATIKKDAQGLENTNQQIAQDEQALQGDLDKLKQLANSPTGFSEQAFNQAQKQEQQDEQTL 542
+ ++ + Q I EQ + + Q+ + N + +
Sbjct: 454 SF--DNSLVATSKVQTINGKEQIGVNSFNLVSQVWSVYNSLKTSEENLQKNAKILCNNGS 511
Query: 543 QNEEKTFNSEQEGLKQAIQQAQAQQQKQQQKQEQQQAQQTYQEDLTHSQSALNDVASDNT 602
Q+ NS GL + AQ Q Q + +N+ T
Sbjct: 512 QSGTSPCNSSSGGLSIS-GNAQLQNILSPTNGTTTNTQAKSNASKLKAMVMVNNEEEAKT 570
Query: 603 IASNDTNYTNNQNT------AIKEDAQGLENTNQQIAQDEQALQGDLDKLKQLANSPTGF 656
N ++ Q++ A+ Q + N Q I + A Q + ++ AN+
Sbjct: 571 TNFNQSSGPTTQSSNSTVMGALNTVLQNVSNFQQSI---QSAFQNQENNIQAWANALYNT 627
Query: 657 SEQAFNQAQKQEQQDEQTLQNEEKTFNSEQERLKQAIANAKPTSPTPSHAPTPTKHTAPN 716
S NQ+Q + Q L+ + + Q I PT +A
Sbjct: 628 SNPNGNQSQNLTTNNNQDLRIQLRA------NFYQLINTINQQVPTDMNALINQSQQTQQ 681
Query: 717 TPPNKVPPTPPTQNPPAESVWSGVYWLQNKTYSNKGIYYIDPNLSGQSGQSGNTLSTYTA 776
T + T N A + S W + +K Y + G Q+ +T
Sbjct: 682 TSGS----ASTTNNACASGMGSSGNWCYQQWSDSKAYYSGLQSALGYQTQA----TTQNG 733
Query: 777 NLFGRSFSVNIQNGTLIIG-------NNTESVN--SNGLIWIGHGGFGYI---------- 817
+ G + + N+Q TL G N +SVN SNG G G G
Sbjct: 734 SSGGSNITYNVQQITLTSGGLLNQIITNLKSVNGGSNG----GSSGNGTSQINTAYQMLT 789
Query: 818 ------TGTFSAANIYLTNNFKTGEGVS--NSDGGG----------ANITFKASDNITMD 859
GT++++N ++N G + NS G N A+ T
Sbjct: 790 DASDGKLGTYNSSNSSNSSNSGNNNGYTPCNSTNGSNGTSGSNCYEPNKQQNATTATTTT 849
Query: 860 GLN----YNDAETVTKMIQTGASQHSYAT-----FDALNNISVTNSSFSDMTWGKFSFSA 910
N YNDA+ + +I + + F+AL +NSS S
Sbjct: 850 DSNLQKVYNDAQKIANIIASSGNNKGVENGLKQFFEALK----SNSS-----------SL 894
Query: 911 KNISFSNASFSGFTNPGG-SSVISANATNSLSFINSRLN--------GGAVYNLQANSLI 961
N+ + +S S T GG +++ A TN +S N+ +N G + N +N +
Sbjct: 895 SNLCGNGSSGSSSTCSGGLINLLGAIPTNGVSDTNNLINLLTEFIKTAGFIQNKDSN--V 952
Query: 962 FNNTQAVFNVLYSRGTSNFNA-TTQLLGNTNFTLSSQSLLNFNGDTTLQNNANITLGNKS 1020
+ + F + S + F A + N TL + N + LG+K+
Sbjct: 953 STSLTSAFQAITSAISQGFQALQNDISPNAILTLLQEITSNTTTIQSFSQTLRQLLGDKT 1012
Query: 1021 QAAFKNSLTLDNNSNLSLDNQSVLNANNTSAFNNQASLNIYNGSQAT 1067
+ L ++ ++ NQ N + + +Q L+ Y +++T
Sbjct: 1013 FFMVQQKLI---DAMINARNQVQNAQNQANNYGSQPVLSQYAAAKST 1056
Score = 42.0 bits (97), Expect = 2e-04
Identities = 180/897 (20%), Positives = 326/897 (36%), Gaps = 137/897 (15%)
Query: 929 SSVISANATNSLSFINSRLNGGAVYNLQANSLIFNNTQAVFNVLYSRGTSNFNATTQLLG 988
S+V S N +N+ + ++L A + I ++ + Y++ + N T +
Sbjct: 162 SAVNSLNPSNNSQEVKAQLQNTAQSMAELLQQIEHSITKTTSTTYAQSLLS-NLTDAVNA 220
Query: 989 NTNFTLSSQSLLNFN-----GDTTLQNNANITLGNKSQAAF--KNSLTLDNNSNLSLDNQ 1041
++N T +L+N G + ++ L Q F NSL +SN
Sbjct: 221 SSNNTTYVSALVNALNTLGVGVFPTTTSTHVVLNPPGQVVFYPTNSLLGSTSSN------ 274
Query: 1042 SVLNANNTSAFNNQASLNIYNGSQATFNSLFFNGGTLSLNASSKLNASNASFSNNTTINL 1101
+NN +NN +N G +T N NG + + F N T
Sbjct: 275 ----SNNQQQYNNTLLMNTLQGELSTNNQNNPNGCANQIQCLEQ-------FIQNLT--- 320
Query: 1102 DDSVLSASNTSSLNANINFQGASQADFGGNTIIDTASFNFDSASSLNFNNLTANGALNFN 1161
L+A+ TS+ AN Q +Q + I+ N + ++ N NNL + ALNF
Sbjct: 321 ---PLAATPTSTNQANQQVQAIAQK--LQSVAINALDNNAINNTTYNLNNL--HNALNFQ 373
Query: 1162 GYTPSL---TKALMSVSG-QFVLGNNGDINLSDINIFDNITKSVTYNILNAQ-KGITGIS 1216
Y ++ AL +S F N N S+ +T NI TG
Sbjct: 374 AYQSTIEQYNNALKQISWISFSEPKNLLKNTSNNYQIGTVTNDQGQNISAYDCTSATGSL 433
Query: 1217 GANGYEKILFYGMKIQNATYSDNNNIQTWSFINPLNSSQIIQESIKNGDLTIEVLNNPNS 1276
++ I N T S +N++ S + +N + Q + + +L +V + NS
Sbjct: 434 SSDASSGISCSATSSTNNTNSFDNSLVATSKVQTINGKE--QIGVNSFNLVSQVWSVYNS 491
Query: 1277 ASNTIFNIAPELYNYQASKQNPTGYSYDYSDNQAGTYYLTSN--IKGLFTPKGSQTPQAP 1334
+ N+ N + N + ++ +G ++ N ++ + +P T
Sbjct: 492 LKTSEENLQK---NAKILCNNGSQSGTSPCNSSSGGLSISGNAQLQNILSPTNGTTTNTQ 548
Query: 1335 GTYSPFNQPLSSLNIYNKGFSSENLKTLLGILSQNSATLKEMIESNQLDNITNINEVLQL 1394
+ + + + N G +Q+S + + L N++N + +Q
Sbjct: 549 AKSNASKLKAMVMVNNEEEAKTTNFNQSSGPTTQSSNSTVMGALNTVLQNVSNFQQSIQS 608
Query: 1395 LDKIKITQVQ--KQALLETIN-------HLTDNINQTF------NNGNLIIGATQDNVTN 1439
+ + +Q AL T N +LT N NQ N LI Q T+
Sbjct: 609 AFQNQENNIQAWANALYNTSNPNGNQSQNLTTNNNQDLRIQLRANFYQLINTINQQVPTD 668
Query: 1440 STSSIWFGGNGYSSPCTLDSATCSSFRNTYLGQLLGSTSPYLGYINADFKAKSIYITGTI 1499
+ I S T ++ +S N +GS+ + +D KA + +
Sbjct: 669 MNALI------NQSQQTQQTSGSASTTNNACASGMGSSGNWCYQQWSDSKAYYSGLQSAL 722
Query: 1500 G----SGNAFESGGSADVTFQSANNLVLNKANIEAQATDNIFNLLGQKGIEKIFNQGNLA 1555
G + S G +++T+ + + L + Q N+ K + N G+
Sbjct: 723 GYQTQATTQNGSSGGSNITY-NVQQITLTSGGLLNQIITNL------KSVNGGSNGGSSG 775
Query: 1556 NVLSQV--AMEKIKQA--GGLGNFI------------------------ENALSPLSKEL 1587
N SQ+ A + + A G LG + N S +
Sbjct: 776 NGTSQINTAYQMLTDASDGKLGTYNSSNSSNSSNSGNNNGYTPCNSTNGSNGTSGSNCYE 835
Query: 1588 PASLQNETLGQLIGQNNLDDLLNNSGVMNAIQNIISKKLSIFGNFVTPSIIENYLAKQSL 1647
P QN T +NL + N++ I NII+ + G +EN L KQ
Sbjct: 836 PNKQQNATTATTTTDSNLQKVYNDA---QKIANIIASSGNNKG-------VENGL-KQFF 884
Query: 1648 KSMLDDKGLLNFIGGYMNASELSSILSVVLKDITNPPTSLQKDIGVVANDLLNEFLGQDV 1707
+++ + L+ + G ++ S+ ++ + PT+ D + N LL EF
Sbjct: 885 EALKSNSSSLSNLCGNGSSGSSSTCSGGLINLLGAIPTNGVSDTNNLIN-LLTEF----- 938
Query: 1708 IKKLESQGLVSNIINNIISQ-----GGLSGVYNQGLGSVLPPSLQNALKENDLGTLL 1759
+++ G + N +N+ + ++ +QG +LQN + N + TLL
Sbjct: 939 ---IKTAGFIQNKDSNVSTSLTSAFQAITSAISQGF-----QALQNDISPNAILTLL 987
Score = 42.0 bits (97), Expect = 2e-04
Identities = 138/614 (22%), Positives = 212/614 (34%), Gaps = 98/614 (15%)
Query: 1485 NADFKAKSIYITGTIGSGNAFESGGSADVTFQSANNLVLNKANIEAQATDNIFNLLGQKG 1544
N + + + T+G G F + S V +V N +T + N Q
Sbjct: 224 NTTYVSALVNALNTLGVG-VFPTTTSTHVVLNPPGQVVFYPTNSLLGSTSSNSNNQQQYN 282
Query: 1545 IEKIFN--QGNLANVLSQVAMEKIKQAGGLGNFIENALSPLSKELPASLQNETLGQLIGQ 1602
+ N QG L+ Q L FI+N L+PL+ ++ Q Q I Q
Sbjct: 283 NTLLMNTLQGELSTNNQNNPNGCANQIQCLEQFIQN-LTPLAATPTSTNQANQQVQAIAQ 341
Query: 1603 NNLD---DLLNNSGVMNAIQNIISKKLSIFGNFVTPSIIENYLAKQSLKSMLDDKGLLNF 1659
+ L+N+ + N N+ + + N L Q+ +S ++
Sbjct: 342 KLQSVAINALDNNAINNTTYNLNN--------------LHNALNFQAYQSTIEQ------ 381
Query: 1660 IGGYMNASELSSILSVVLKDITNPPTSLQKDIGVVANDLLNEFLGQDVIKKLESQGLVSN 1719
Y NA + S +S TS IG V ND QG +
Sbjct: 382 ---YNNALKQISWISFSEPKNLLKNTSNNYQIGTVTND----------------QGQNIS 422
Query: 1720 IINNIISQGGLSGVYNQGLGSVLPPSLQNALK-ENDLGTLLSPRGLHDFWQKGY--FNFL 1776
+ + G LS + G+ S N +N L + ++ Q G FN +
Sbjct: 423 AYDCTSATGSLSSDASSGISCSATSSTNNTNSFDNSLVATSKVQTINGKEQIGVNSFNLV 482
Query: 1777 SNGYVFVNNSSFSNATGGSLNFVANKSIIFNGDN---TIDFSKYQGALIFASN-DVSNIN 1832
S + N+ S N N I+ N + T + G L + N + NI
Sbjct: 483 SQVWSVYNSLKTSEE-----NLQKNAKILCNNGSQSGTSPCNSSSGGLSISGNAQLQNI- 536
Query: 1833 ITTLNATNGLSLNA-GLNNVSVQKGEICVNLANCPTTKNSSSTNSSVTPTNESLSVRANN 1891
L+ TNG + N +N S K + VN T N N S PT +S +N
Sbjct: 537 ---LSPTNGTTTNTQAKSNASKLKAMVMVNNEEEAKTTNF---NQSSGPTTQS-----SN 585
Query: 1892 FTFLGAIASNGAIDLSQVKN-NSVIDTLNLNENAALQANNLTITNAFNNASNSTANINGN 1950
T +GA+ + L V N I + N+ +QA NA N SN N + N
Sbjct: 586 STVMGALNTV----LQNVSNFQQSIQSAFQNQENNIQA----WANALYNTSNPNGNQSQN 637
Query: 1951 FTLN--QQATLSTNASGLNVMGNFNSYGDLVFNLSHSVSHAIINAQGSATIMANNNNPLI 2008
T N Q + A+ ++ N N + S GSA+ N
Sbjct: 638 LTTNNNQDLRIQLRANFYQLINTINQQVPTDMNALINQSQQTQQTSGSAS----TTNNAC 693
Query: 2009 QFNTSSKEVGTYTLIDSAKAIYYGYNNQITGGSSLDNYLKLYTLIDINGKHMVMTDNGLT 2068
S Y +KA Y G S+L + T +G + +T
Sbjct: 694 ASGMGSSGNWCYQQWSDSKAYYSGLQ------SALGYQTQATTQNGSSG------GSNIT 741
Query: 2069 YNGQAVSVKDGGLV 2082
YN Q +++ GGL+
Sbjct: 742 YNVQQITLTSGGLL 755
Score = 34.7 bits (78), Expect = 0.032
Identities = 118/570 (20%), Positives = 210/570 (36%), Gaps = 132/570 (23%)
Query: 1815 SKYQGALIFASNDVSNINITTLN-ATNGLSLNAGLNNVSVQKGEICVNLANCPT-TKNSS 1872
S + + +SN +S +N +LN + N + A L N + E+ + + T T +++
Sbjct: 148 SAFDQGIALSSNIISAVN--SLNPSNNSQEVKAQLQNTAQSMAELLQQIEHSITKTTSTT 205
Query: 1873 STNSSVTPTNESLSVRANNFTFLGAIAS--------------------NGAIDLSQVKNN 1912
S ++ ++++ +NN T++ A+ + N + N
Sbjct: 206 YAQSLLSNLTDAVNASSNNTTYVSALVNALNTLGVGVFPTTTSTHVVLNPPGQVVFYPTN 265
Query: 1913 SVIDTLNLNENAALQANNLTITNAFNN--ASNSTANING-------------NFTLNQQA 1957
S++ + + N N Q NN + N ++N+ N NG N T
Sbjct: 266 SLLGSTSSNSNNQQQYNNTLLMNTLQGELSTNNQNNPNGCANQIQCLEQFIQNLTPLAAT 325
Query: 1958 TLSTNAS--------------GLNVMGNFNSYGDLVFNLSHSVSHAIINAQGSATIMANN 2003
STN + +N + N N+ + +NL++ H +N Q + +
Sbjct: 326 PTSTNQANQQVQAIAQKLQSVAINALDN-NAINNTTYNLNN--LHNALNFQAYQSTIEQY 382
Query: 2004 NNPLIQF-------------NTSSK-EVGTYTLIDSAKAIYYGYNNQITGGSSLDNYLKL 2049
NN L Q NTS+ ++GT T D + I TG S D +
Sbjct: 383 NNALKQISWISFSEPKNLLKNTSNNYQIGTVT-NDQGQNISAYDCTSATGSLSSDASSGI 441
Query: 2050 YTLIDINGKHMVMTDNGL-------TYNG-QAVSVKDGGLVVGFKDSQNQYIYTSI---- 2097
+ + DN L T NG + + V LV SQ +Y S+
Sbjct: 442 SCSATSSTNNTNSFDNSLVATSKVQTINGKEQIGVNSFNLV-----SQVWSVYNSLKTSE 496
Query: 2098 --LYNKVKIAVSN------DPINNLQAPTLKQYIAQIQG----TQGVDSIDQAGGS---- 2141
L KI +N P N+ AQ+Q T G + QA +
Sbjct: 497 ENLQKNAKILCNNGSQSGTSPCNSSSGGLSISGNAQLQNILSPTNGTTTNTQAKSNASKL 556
Query: 2142 QAINWLNKIFETKGSPL---FAPYYLESHST--KDLTTIAGDIANTLEVIANPNFKNDAT 2196
+A+ +N E K + P S+ST L T+ +++N + I + F+N
Sbjct: 557 KAMVMVNNEEEAKTTNFNQSSGPTTQSSNSTVMGALNTVLQNVSNFQQSIQSA-FQNQEN 615
Query: 2197 NI-----LQINTYTQQMSRLAKLS-----DTSTFASADFHERLEALKNKRFADAIPNAMD 2246
NI NT ++ L+ D A+F++ + + + +P M+
Sbjct: 616 NIQAWANALYNTSNPNGNQSQNLTTNNNQDLRIQLRANFYQLINTINQQ-----VPTDMN 670
Query: 2247 VILKYSQRNR-------VKNNVWATGVGGA 2269
++ SQ+ + NN A+G+G +
Sbjct: 671 ALINQSQQTQQTSGSASTTNNACASGMGSS 700
>ref|NP_222772.1| putative [Helicobacter pylori J99]
Length = 220
Score = 50.8 bits (120), Expect = 4e-07
Identities = 40/224 (17%), Positives = 90/224 (39%), Gaps = 11/224 (4%)
Query: 448 KTYQQDLSNSQSALNNAASDNKIAN-SDTDYTKNKNATIKKDAQGLENTNQQIAQDEQAL 506
K+ N + AL + K ++T +N + + + LE N+ + D++ L
Sbjct: 4 KSSNDTQENPKDALKSTNFHEKHTKPTETTELVEENKALTTEKERLERENKNLTADKENL 63
Query: 507 QGDLDKLKQLANSPTGFSEQAFNQAQKQEQQDEQTLQNEEKTFNSEQEGLKQAIQQAQAQ 566
+ +L++ N + N Q E + L+ +E + K+ + +
Sbjct: 64 TKEKTELQKQVN-------ELKNSKQVLENEKADWLREKENLTKDRENLTKEKTELTEKN 116
Query: 567 QQKQQQKQEQQQAQQTYQEDLTHSQSALNDVASDNTIASNDTNYTNNQNTAIKEDAQGLE 626
+ +K+ ++ ++ T SQ +N++ + + N+ N+NT +K D L
Sbjct: 117 KVLTTEKERLATEKENLTKEKTESQKQVNELKNSKQVLENEKADLTNENTKLKTDKTDLT 176
Query: 627 NTNQQIAQDEQALQGDLDKLKQLANSPTGFSEQAFNQAQKQEQQ 670
NQ++ ++ L +K+ LA + N ++ Q+
Sbjct: 177 EKNQRLTTEKTELN---NKITGLATEKERLAADKENLTKESRQR 217
>ref|NP_223025.1| putative [Helicobacter pylori J99]
Length = 501
Score = 47.0 bits (110), Expect = 6e-06
Identities = 73/356 (20%), Positives = 132/356 (36%), Gaps = 47/356 (13%)
Query: 370 TYDILTTNGAIQYGVYQSYLWDLINYKGDKAISHVEVGNNTYDVTFDINGQDETLQETFN 429
T +IL TN WD + GD E NN +E L T N
Sbjct: 130 TQEILETN------------WDELENLGDLEALAKEEPNN-----------EEQLLPTLN 166
Query: 430 KQSIITQFLGDDLQQQAQKTYQQDLSNSQSALNNAASDNKIANSDTDYTKNKNATIKKDA 489
+Q G+ +++AQ+ +++ ++A + D K K+ +
Sbjct: 167 EQE------GETPKEEAQEEVKKEEVKEMQEEVKEKQKQEVAENPQDEEKPKD----DET 216
Query: 490 QG-LENTNQQIAQDEQALQGDLDKLKQLANSPTGFSEQAFNQAQKQEQQDEQTLQNEEKT 548
QG +E + E Q +L+ K+ E+ Q K+E+Q++ +
Sbjct: 217 QGSVEPPKDEEVSKELETQEELETPKEETQEQEPIKEET--QEIKEEKQEKTQDSPSAQE 274
Query: 549 FNSEQEGLKQAIQQAQAQQQKQQQKQEQQQAQQTYQEDLTHSQSALNDVASDNTIASNDT 608
+ QE +K+ IQ+ Q+ +++ QE Q+ +T Q+ T + +
Sbjct: 275 LEAMQELVKE-IQENSNDQENKKETQETQENTETPQDIETQELEIPKEEETQEVAEKTQV 333
Query: 609 NYTNNQNTA----IKEDAQGLENTNQQI-AQDEQALQGDLDKLKQLANSPTGFSEQAFNQ 663
+ A KE + + T Q++ AQDE+ + + K + + S ++ Q
Sbjct: 334 QGLEKEEIAETPQEKEIQETQDETPQELEAQDEKLQENETPKDESMQESAQNLQDKETPQ 393
Query: 664 AQKQEQQDEQTLQNEE----KTFNSEQERLKQAIANAKPTSPTPSHAPTPTKHTAP 715
+ QE E E K E L +A+A P + + P + AP
Sbjct: 394 EETQEDHYESIEDIPEPVMAKAMGEELPFLNEAVAKI-PNNENDTETPKESDIKAP 448
Score = 39.3 bits (90), Expect = 0.001
Identities = 63/299 (21%), Positives = 111/299 (37%), Gaps = 42/299 (14%)
Query: 442 LQQQAQKTYQQDLSNSQSALN---NAASDNKIANSDTDYTKNKNATIKKDAQGLENTNQQ 498
L + K Q+ L ++ S L N +I ++ D +N ++ A+ N +Q
Sbjct: 102 LPTEMLKVLQKKLGSNASELEPSQNLDPTQEILETNWDELENLG-DLEALAKEEPNNEEQ 160
Query: 499 IAQDEQALQGDLDKLK-QLANSPTGFSEQAFNQAQKQEQQDEQTLQNEEKTFN------- 550
+ +G+ K + Q E +KQ+Q+ + Q+EEK +
Sbjct: 161 LLPTLNEQEGETPKEEAQEEVKKEEVKEMQEEVKEKQKQEVAENPQDEEKPKDDETQGSV 220
Query: 551 -------------------------SEQEGLKQAIQQAQAQQQKQQQKQEQQQAQQTYQE 585
EQE +K+ Q+ + ++Q++ Q Q + QE
Sbjct: 221 EPPKDEEVSKELETQEELETPKEETQEQEPIKEETQEIKEEKQEKTQDSPSAQELEAMQE 280
Query: 586 DLTHSQSALNDVASDNTIASNDTNYTNNQNTAIKEDAQGLENTNQQIAQDEQALQGDLDK 645
+ Q ND + N Q+ +E E Q++A+ Q +QG L+K
Sbjct: 281 LVKEIQENSNDQENKKETQETQENTETPQDIETQELEIPKEEETQEVAEKTQ-VQG-LEK 338
Query: 646 LKQLANSP--TGFSEQAFNQAQKQEQQDEQTLQNEEKTFNSEQERLKQAIANAKPTSPT 702
+++A +P E Q+ E QDE+ +NE S QE + P T
Sbjct: 339 -EEIAETPQEKEIQETQDETPQELEAQDEKLQENETPKDESMQESAQNLQDKETPQEET 396
>ref|NP_222774.1| putative [Helicobacter pylori J99]
Length = 327
Score = 45.8 bits (107), Expect = 1e-05
Identities = 56/270 (20%), Positives = 106/270 (38%), Gaps = 44/270 (16%)
Query: 468 NKIANSDTD-YTKNKNATIKKDAQGLENTNQQIAQDEQALQGDLDKLKQ----LANSPTG 522
+K+ +T+ + +N++ ++K GLE++N Q+ Q+ L + +LK LA T
Sbjct: 65 DKLTKENTELFAENESLSVK--ISGLEHSNDQLWQNNNKLTKEKAELKTEKDILAKENTR 122
Query: 523 F--------SEQAFNQAQKQEQQDEQT--------LQNEEKTFNSEQEGLKQAIQQAQAQ 566
E+ +K+ + E T L E K +E + L + +
Sbjct: 123 LLAARDRLTEEKRELTTEKERLKRENTELTHKITELTKENKALTTENDKLNHQVTALTNE 182
Query: 567 QQKQQQKQEQQQAQQTYQE----DLTHSQSALNDVASDNTIASNDTNYTNNQNTAIKEDA 622
+ +Q++ + Q + E +L L D A TNNQ
Sbjct: 183 RDSLEQERARLQDAHGFLEKRCTNLEKENQRLTDKLKQLESAQKSLENTNNQL------R 236
Query: 623 QGLENTNQQIAQ-------DEQALQGDLDKLKQL----ANSPTGFSEQAFNQAQKQEQQD 671
Q LEN+N Q+AQ ++ L+ ++ +LK L A S + A + ++
Sbjct: 237 QALENSNVQLAQAKEKIAIEKSELEREIARLKSLEGMEAKSDLDLHNRRLASANEDLKRQ 296
Query: 672 EQTLQNEEKTFNSEQERLKQAIANAKPTSP 701
+ L+ E + L + ++ +P P
Sbjct: 297 NRKLEEENIALKERVDGLNEQLSKLQPQKP 326
Score = 43.5 bits (101), Expect = 7e-05
Identities = 48/225 (21%), Positives = 89/225 (39%), Gaps = 21/225 (9%)
Query: 492 LENTNQQIAQDEQALQGDLDKLKQ------LANSPTGFSEQAFNQAQKQEQQDEQTLQNE 545
L++ N Q+ Q L DKL + N + Q Q+ L E
Sbjct: 46 LKDANDQLRQKNDKLFITKDKLTKENTELFAENESLSVKISGLEHSNDQLWQNNNKLTKE 105
Query: 546 EKTFNSEQEGL-KQAIQQAQAQQQKQQQKQEQQQAQQTYQEDLTHSQSALNDVASDNTIA 604
+ +E++ L K+ + A+ + ++K+E ++ + + T + ++ +N
Sbjct: 106 KAELKTEKDILAKENTRLLAARDRLTEEKRELTTEKERLKRENTELTHKITELTKENKAL 165
Query: 605 SNDTNYTNNQNTAIKEDAQGLENTNQQIAQD------------EQALQGDLDKLKQLANS 652
+ + + N+Q TA+ + LE ++ QD E+ Q DKLKQL ++
Sbjct: 166 TTENDKLNHQVTALTNERDSLEQERARL-QDAHGFLEKRCTNLEKENQRLTDKLKQLESA 224
Query: 653 PTGFSEQAFNQAQKQEQQDEQTLQNEEKTFNSEQERLKQAIANAK 697
Q E + Q Q +EK E+ L++ IA K
Sbjct: 225 QKSLENTNNQLRQALENSNVQLAQAKEK-IAIEKSELEREIARLK 268
>ref|NP_223770.1| putative [Helicobacter pylori J99]
Length = 331
Score = 45.4 bits (106), Expect = 2e-05
Identities = 39/169 (23%), Positives = 80/169 (47%), Gaps = 5/169 (2%)
Query: 433 IITQFLGDDLQQQAQKTYQQDLSNSQSALNNAASDNKIANSDTDYTKNKNA-TIKKDAQG 491
I +Q + L Q+ ++ + +N LNNA + + ++ A T+K+ +Q
Sbjct: 50 IHSQVEANTLSQEGLRSVYEGQANKIKDLNNAILSQEESLRALKASQEVQANTLKQQSQT 109
Query: 492 LENTNQQIAQDEQALQGDLDKL-KQLANSPTGFSEQAFNQAQKQEQQDEQTLQNEEKTFN 550
LE+ +I ++QA+Q LDK K+++ T S+ +Q ++ ++ + EK
Sbjct: 110 LEDLRNEIHANQQAIQ-QLDKQNKEMSELLTKLSQDLVSQIALIQKALKEQEEKAEKPLK 168
Query: 551 SEQEGLKQAIQQAQAQQQKQQQKQEQQQAQQTYQEDLTHSQSALNDVAS 599
S K +A+ K Q+K+ Q++A+ + +DL+ + + S
Sbjct: 169 SSTPANKN--PPLKAETPKNQEKKTQEKAKVEFDKDLSKQKEIFQEALS 215
Score = 32.3 bits (72), Expect = 0.16
Identities = 42/174 (24%), Positives = 68/174 (38%), Gaps = 19/174 (10%)
Query: 564 QAQQQKQQQKQEQQQAQQTYQEDLT--HSQSALNDVASDN--TIASNDTNYTNNQNTAIK 619
Q+ K++ KQ Q ++ + LT HSQ N ++ + ++ N + N AI
Sbjct: 25 QSGATKKELKQLQVNSKN-FSNILTKIHSQVEANTLSQEGLRSVYEGQANKIKDLNNAIL 83
Query: 620 EDAQGLENTNQQIAQDEQALQGDLDKLKQLANSPTGFSEQAFNQAQKQEQQDEQTLQNEE 679
+ L + +Q+ QA + LKQ + + + Q +Q D+Q + E
Sbjct: 84 SQEESLRAL--KASQEVQA-----NTLKQQSQTLEDLRNEIHANQQAIQQLDKQNKEMSE 136
Query: 680 KTFNSEQERLKQAIANAKPTSPTPSHAPTPTKHTAPNTPPNKVPP----TPPTQ 729
Q+ + Q K A P K +TP NK PP TP Q
Sbjct: 137 LLTKLSQDLVSQIALIQKALKEQEEKAEKPLK---SSTPANKNPPLKAETPKNQ 187
>ref|NP_223194.1| cag island protein [Helicobacter pylori J99]
Length = 1819
Score = 45.4 bits (106), Expect = 2e-05
Identities = 48/221 (21%), Positives = 94/221 (41%), Gaps = 17/221 (7%)
Query: 441 DLQQQAQKTYQQDLSNSQSALNNAASDNKIANSDTDYTKNKNATIKK---DAQGLENTNQ 497
+ ++AQ+ QDLSN ++ N D ++++ N T K D LE T
Sbjct: 9 ETSKKAQQDSPQDLSNEEATEANHFEDLLKESTESSDNHLDNPTETKTHFDEDKLEETQT 68
Query: 498 QIA----QDEQALQGDL-DKL----KQLANSPTGFSEQAFNQAQKQEQQDEQTLQNEEKT 548
Q+ + ++ G L DKL ++L + F++Q + Q+ +E +N E
Sbjct: 69 QMDSGGNETSESSNGSLADKLFKKARKLVDDKRPFTQQKSLDEETQKLNEEDDQENNEHQ 128
Query: 549 FNSEQEGLKQAIQQAQAQQQKQQQKQEQQQAQQTYQEDLTHSQSALNDVASDNTIASNDT 608
++ + + + + QQ Q ++ + + EDL + +D DN S+D
Sbjct: 129 EETQTDLIDDETSE-KTQQDSPQDLSNEEATEANHFEDLLKESTESSDNHLDNPTESSDN 187
Query: 609 NYTNNQNTAIKEDAQGL-ENTNQQI---AQDEQALQGDLDK 645
+ N T +E E+ ++I + D++ ++G K
Sbjct: 188 HLDNPTETKTQETKTHFDEDKPEEITDDSNDQEIIKGSKKK 228
>ref|NP_223979.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 696
Score = 42.0 bits (97), Expect = 2e-04
Identities = 109/506 (21%), Positives = 185/506 (36%), Gaps = 88/506 (17%)
Query: 851 KASDNITMDGLNYNDAETVTKMIQTGASQHSYATFDALNNI--------SVTN--SSFSD 900
+A D+ + Y E V K+ TGA Q+ +D L+N+ S+ N S+ S
Sbjct: 20 RAEDDGFYMSVGYQIGEAVQKVKNTGALQNLADRYDNLSNLLNQYNYLNSLVNLASTPSA 79
Query: 901 MTWGKFSFSAKNISFSNASFSGFTNPGGSSVISA--NATNSLSFINSRLNGGAVYNLQAN 958
+T + S+ I+ ++A+ T+P +V A A I ++ G NL
Sbjct: 80 ITGAIDNLSSSAINLTSAT---TTSPAYQAVALALNAAVGMWQVIAFGISCGPGPNLGPE 136
Query: 959 SLIFNNTQAVFNV-LYSRGTSNFNATTQLLGNTNFTLSSQSLLNFNGDTTLQNNANITLG 1017
L ++ N YS T + TT G +N G + +++ +
Sbjct: 137 HLENGGVRSFDNTPNYSYNTGSGTTTTTCNGASNV-----------GPNGILSSSEYQVL 185
Query: 1018 NKSQAAFKNSLTLDNNSNLSLDNQS---VLNANNTSAFNNQASLNIYNGSQATFNSLFFN 1074
N + + +L + + N S V+N N T N +G N +++
Sbjct: 186 NTAYQTIQTALNQNQGGGMPALNSSKNMVVNINQTFTKNPTTEYTYPDG-----NGNYYS 240
Query: 1075 GGT---LSLNASSKLNASNASFSNNTTINLDDSVLSASNTSSLNANINFQGASQADFGG- 1130
GG+ + L SS +A N T IN+ ++ N ++N G + FGG
Sbjct: 241 GGSSIPIQLKISSVNDAENLLQQAATIINV---------LTTQNPHVNGGGGAWG-FGGK 290
Query: 1131 ---------------NTIIDTASFNFDSASSLNFN-NLTANGALNFNGYTPSLTKALMSV 1174
N +I A + LN N N NFN YT T+ +
Sbjct: 291 TGNVMDIFGDSFNAINEMIKNAQAVLEKTQQLNANENTQITQPDNFNPYTSKDTQFAQEM 350
Query: 1175 SGQFVLGNNGDINLSDI-----NIFDNITKSVTYNILNAQKGITGISGANGYEKILFYGM 1229
+ N + + + F +I + ++ G G+ N Y +
Sbjct: 351 LNR----ANAQAEILSLAQQVADNFHSIQGPIQQDLEECTAGSAGVINDNTYGSGCAFVK 406
Query: 1230 KIQNATYSDNNNIQTWSFINPLNSSQIIQESIKNGDLTIEVLNNPNSASNT-IFNI--AP 1286
+ N+ T + N +N + + ++I N + L N + A N+ I N+ A
Sbjct: 407 ETLNSLEQ-----HTAYYGNQVNQDRALSQTILNFKEALSTLGNDSKAINSGISNLPNAK 461
Query: 1287 ELYNYQASKQNPTG------YSYDYS 1306
L N + QNP YS D S
Sbjct: 462 SLQNMTHATQNPNSPEGLLTYSLDTS 487
Score = 32.3 bits (72), Expect = 0.16
Identities = 43/216 (19%), Positives = 71/216 (31%), Gaps = 37/216 (17%)
Query: 472 NSDTDYTKNKNATIKKDAQGLENTNQQIAQDEQALQGDLDKLKQLANSPTGFSEQAFNQA 531
N+ + KN A ++K Q N N QI Q D + T F+++ N+A
Sbjct: 303 NAINEMIKNAQAVLEKTQQLNANENTQITQP--------DNFNPYTSKDTQFAQEMLNRA 354
Query: 532 QKQEQQDEQTLQNEEKTFNSEQEGLKQAIQQAQAQQQKQQQKQEQQQAQQTYQEDLTHSQ 591
Q + Q F+S Q ++Q +++ A TY +
Sbjct: 355 NAQ-AEILSLAQQVADNFHSIQGPIQQDLEECTAGSAGVIN-------DNTYGSGCAFVK 406
Query: 592 SALNDVASDNTIASNDTNYTNNQNTAIKEDAQGLENTNQQIAQDEQALQGDLDKL----- 646
LN + N NQ+ A+ + + + D +A+ + L
Sbjct: 407 ETLNSLEQHTAYYGNQV----NQDRALSQTILNFKEALSTLGNDSKAINSGISNLPNAKS 462
Query: 647 -------KQLANSPTG-----FSEQAFNQAQKQEQQ 670
Q NSP G +NQ Q Q+
Sbjct: 463 LQNMTHATQNPNSPEGLLTYSLDTSKYNQLQTVAQE 498
Score = 30.4 bits (67), Expect = 0.60
Identities = 38/185 (20%), Positives = 72/185 (38%), Gaps = 27/185 (14%)
Query: 1773 FNFLSNGYVFVNNSSFSNATGGSLNFVANKSIIFNGDNTIDFSKYQGALIFASNDVSNIN 1832
+N+L++ VN +S +A G+++ +++ +I T YQ + + V
Sbjct: 64 YNYLNS---LVNLASTPSAITGAIDNLSSSAINLTSATTTS-PAYQAVALALNAAVGMWQ 119
Query: 1833 ITTLNATNGLSLNAG---LNNVSVQKGEICVNLANCPTTKNSSSTNSSVTPTNESLSVRA 1889
+ + G N G L N V+ + N P ++ + ++ T N + +V
Sbjct: 120 VIAFGISCGPGPNLGPEHLENGGVRSFD------NTPNYSYNTGSGTTTTTCNGASNVGP 173
Query: 1890 NNFTFLGAIASNGAIDLSQVKNNSVIDTLNLNENAALQANNLTITNAFNNASNSTANING 1949
N I S+ + ++ LN N+ + A N++ N NIN
Sbjct: 174 NG------ILSSSEYQVLNTAYQTIQTALNQNQGGGMPA--------LNSSKNMVVNINQ 219
Query: 1950 NFTLN 1954
FT N
Sbjct: 220 TFTKN 224
Score = 28.9 bits (63), Expect = 1.7
Identities = 74/332 (22%), Positives = 114/332 (34%), Gaps = 54/332 (16%)
Query: 2169 TKDLTTIAGDIANTL-EVIANPNFKNDATNILQINTYTQQMSRLAKLSDTSTFASADFHE 2227
T ++ I GD N + E+I N + T L N TQ + + + + + S D
Sbjct: 291 TGNVMDIFGDSFNAINEMIKNAQAVLEKTQQLNANENTQ----ITQPDNFNPYTSKDTQF 346
Query: 2228 RLEALKNKRF-ADAIPNAMDVILKY-SQRNRVKNNVWATGVGGASFINGGT--------- 2276
E L A+ + A V + S + ++ ++ G A IN T
Sbjct: 347 AQEMLNRANAQAEILSLAQQVADNFHSIQGPIQQDLEECTAGSAGVINDNTYGSGCAFVK 406
Query: 2277 ---------GTLYGINVGYDRFIKGVIVGGYAAYGYSGFHANITQSGSSNVNMGVYSRAF 2327
YG V DR + I+ A G + SG SN+ +++
Sbjct: 407 ETLNSLEQHTAYYGNQVNQDRALSQTILNFKEALSTLGNDSKAINSGISNLPN---AKSL 463
Query: 2328 IKRSELTMSLNETWGYNKTFINSYDPLLSIINQSYKYDTWTTDAKINYGYDFMFKDKSVI 2387
+ T + N G LL+ + KY+ T A+ F
Sbjct: 464 QNMTHATQNPNSPEG-----------LLTYSLDTSKYNQLQTVAQELGKNPFR------- 505
Query: 2388 FKPQIGLAYYYIGLSGLRGIMDDPIYNQF---RANADPNKKSVLTINFALESRHYFNKNS 2444
+IG+ Y + GI Y QF + N N A ++FN S
Sbjct: 506 ---RIGVINYQNNNGAMNGIGVQAGYKQFFGKKRNWGLRYYGFFDYNHAYIKSNFFNSAS 562
Query: 2445 YYFVIADVGRDLFINSMGDKMVRFIG-NNTLS 2475
+ VG D N + DK F+G NN LS
Sbjct: 563 DVWTYG-VGMDALYNFINDKNTNFLGKNNKLS 593
>ref|NP_222933.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 696
Score = 42.0 bits (97), Expect = 2e-04
Identities = 109/506 (21%), Positives = 185/506 (36%), Gaps = 88/506 (17%)
Query: 851 KASDNITMDGLNYNDAETVTKMIQTGASQHSYATFDALNNI--------SVTN--SSFSD 900
+A D+ + Y E V K+ TGA Q+ +D L+N+ S+ N S+ S
Sbjct: 20 RAEDDGFYMSVGYQIGEAVQKVKNTGALQNLADRYDNLSNLLNQYNYLNSLVNLASTPSA 79
Query: 901 MTWGKFSFSAKNISFSNASFSGFTNPGGSSVISA--NATNSLSFINSRLNGGAVYNLQAN 958
+T + S+ I+ ++A+ T+P +V A A I ++ G NL
Sbjct: 80 ITGAIDNLSSSAINLTSAT---TTSPAYQAVALALNAAVGMWQVIAFGISCGPGPNLGPE 136
Query: 959 SLIFNNTQAVFNV-LYSRGTSNFNATTQLLGNTNFTLSSQSLLNFNGDTTLQNNANITLG 1017
L ++ N YS T + TT G +N G + +++ +
Sbjct: 137 HLENGGVRSFDNTPNYSYNTGSGTTTTTCNGASNV-----------GPNGILSSSEYQVL 185
Query: 1018 NKSQAAFKNSLTLDNNSNLSLDNQS---VLNANNTSAFNNQASLNIYNGSQATFNSLFFN 1074
N + + +L + + N S V+N N T N +G N +++
Sbjct: 186 NTAYQTIQTALNQNQGGGMPALNSSKNMVVNINQTFTKNPTTEYTYPDG-----NGNYYS 240
Query: 1075 GGT---LSLNASSKLNASNASFSNNTTINLDDSVLSASNTSSLNANINFQGASQADFGG- 1130
GG+ + L SS +A N T IN+ ++ N ++N G + FGG
Sbjct: 241 GGSSIPIQLKISSVNDAENLLQQAATIINV---------LTTQNPHVNGGGGAWG-FGGK 290
Query: 1131 ---------------NTIIDTASFNFDSASSLNFN-NLTANGALNFNGYTPSLTKALMSV 1174
N +I A + LN N N NFN YT T+ +
Sbjct: 291 TGNVMDIFGDSFNAINEMIKNAQAVLEKTQQLNANENTQITQPDNFNPYTSKDTQFAQEM 350
Query: 1175 SGQFVLGNNGDINLSDI-----NIFDNITKSVTYNILNAQKGITGISGANGYEKILFYGM 1229
+ N + + + F +I + ++ G G+ N Y +
Sbjct: 351 LNR----ANAQAEILSLAQQVADNFHSIQGPIQQDLEECTAGSAGVINDNTYGSGCAFVK 406
Query: 1230 KIQNATYSDNNNIQTWSFINPLNSSQIIQESIKNGDLTIEVLNNPNSASNT-IFNI--AP 1286
+ N+ T + N +N + + ++I N + L N + A N+ I N+ A
Sbjct: 407 ETLNSLEQ-----HTAYYGNQVNQDRALSQTILNFKEALSTLGNDSKAINSGISNLPNAK 461
Query: 1287 ELYNYQASKQNPTG------YSYDYS 1306
L N + QNP YS D S
Sbjct: 462 SLQNMTHATQNPNSPEGLLTYSLDTS 487
Score = 32.3 bits (72), Expect = 0.16
Identities = 43/216 (19%), Positives = 71/216 (31%), Gaps = 37/216 (17%)
Query: 472 NSDTDYTKNKNATIKKDAQGLENTNQQIAQDEQALQGDLDKLKQLANSPTGFSEQAFNQA 531
N+ + KN A ++K Q N N QI Q D + T F+++ N+A
Sbjct: 303 NAINEMIKNAQAVLEKTQQLNANENTQITQP--------DNFNPYTSKDTQFAQEMLNRA 354
Query: 532 QKQEQQDEQTLQNEEKTFNSEQEGLKQAIQQAQAQQQKQQQKQEQQQAQQTYQEDLTHSQ 591
Q + Q F+S Q ++Q +++ A TY +
Sbjct: 355 NAQ-AEILSLAQQVADNFHSIQGPIQQDLEECTAGSAGVIN-------DNTYGSGCAFVK 406
Query: 592 SALNDVASDNTIASNDTNYTNNQNTAIKEDAQGLENTNQQIAQDEQALQGDLDKL----- 646
LN + N NQ+ A+ + + + D +A+ + L
Sbjct: 407 ETLNSLEQHTAYYGNQV----NQDRALSQTILNFKEALSTLGNDSKAINSGISNLPNAKS 462
Query: 647 -------KQLANSPTG-----FSEQAFNQAQKQEQQ 670
Q NSP G +NQ Q Q+
Sbjct: 463 LQNMTHATQNPNSPEGLLTYSLDTSKYNQLQTVAQE 498
Score = 30.4 bits (67), Expect = 0.60
Identities = 38/185 (20%), Positives = 72/185 (38%), Gaps = 27/185 (14%)
Query: 1773 FNFLSNGYVFVNNSSFSNATGGSLNFVANKSIIFNGDNTIDFSKYQGALIFASNDVSNIN 1832
+N+L++ VN +S +A G+++ +++ +I T YQ + + V
Sbjct: 64 YNYLNS---LVNLASTPSAITGAIDNLSSSAINLTSATTTS-PAYQAVALALNAAVGMWQ 119
Query: 1833 ITTLNATNGLSLNAG---LNNVSVQKGEICVNLANCPTTKNSSSTNSSVTPTNESLSVRA 1889
+ + G N G L N V+ + N P ++ + ++ T N + +V
Sbjct: 120 VIAFGISCGPGPNLGPEHLENGGVRSFD------NTPNYSYNTGSGTTTTTCNGASNVGP 173
Query: 1890 NNFTFLGAIASNGAIDLSQVKNNSVIDTLNLNENAALQANNLTITNAFNNASNSTANING 1949
N I S+ + ++ LN N+ + A N++ N NIN
Sbjct: 174 NG------ILSSSEYQVLNTAYQTIQTALNQNQGGGMPA--------LNSSKNMVVNINQ 219
Query: 1950 NFTLN 1954
FT N
Sbjct: 220 TFTKN 224
Score = 28.9 bits (63), Expect = 1.7
Identities = 74/332 (22%), Positives = 114/332 (34%), Gaps = 54/332 (16%)
Query: 2169 TKDLTTIAGDIANTL-EVIANPNFKNDATNILQINTYTQQMSRLAKLSDTSTFASADFHE 2227
T ++ I GD N + E+I N + T L N TQ + + + + + S D
Sbjct: 291 TGNVMDIFGDSFNAINEMIKNAQAVLEKTQQLNANENTQ----ITQPDNFNPYTSKDTQF 346
Query: 2228 RLEALKNKRF-ADAIPNAMDVILKY-SQRNRVKNNVWATGVGGASFINGGT--------- 2276
E L A+ + A V + S + ++ ++ G A IN T
Sbjct: 347 AQEMLNRANAQAEILSLAQQVADNFHSIQGPIQQDLEECTAGSAGVINDNTYGSGCAFVK 406
Query: 2277 ---------GTLYGINVGYDRFIKGVIVGGYAAYGYSGFHANITQSGSSNVNMGVYSRAF 2327
YG V DR + I+ A G + SG SN+ +++
Sbjct: 407 ETLNSLEQHTAYYGNQVNQDRALSQTILNFKEALSTLGNDSKAINSGISNLPN---AKSL 463
Query: 2328 IKRSELTMSLNETWGYNKTFINSYDPLLSIINQSYKYDTWTTDAKINYGYDFMFKDKSVI 2387
+ T + N G LL+ + KY+ T A+ F
Sbjct: 464 QNMTHATQNPNSPEG-----------LLTYSLDTSKYNQLQTVAQELGKNPFR------- 505
Query: 2388 FKPQIGLAYYYIGLSGLRGIMDDPIYNQF---RANADPNKKSVLTINFALESRHYFNKNS 2444
+IG+ Y + GI Y QF + N N A ++FN S
Sbjct: 506 ---RIGVINYQNNNGAMNGIGVQAGYKQFFGKKRNWGLRYYGFFDYNHAYIKSNFFNSAS 562
Query: 2445 YYFVIADVGRDLFINSMGDKMVRFIG-NNTLS 2475
+ VG D N + DK F+G NN LS
Sbjct: 563 DVWTYG-VGMDALYNFINDKNTNFLGKNNKLS 593
>ref|NP_222831.1| putative [Helicobacter pylori J99]
Length = 412
Score = 41.6 bits (96), Expect = 3e-04
Identities = 35/136 (25%), Positives = 60/136 (43%), Gaps = 25/136 (18%)
Query: 508 GDLDKLKQLANSPTGFSEQAFNQAQKQEQQDEQTLQNEEKTFNSEQE-----------GL 556
GD+DK +L ++A K EQ+ ++T Q +KT SE E G+
Sbjct: 121 GDIDKQIELEQE----KKEANKSGIKLEQERQKTEQERQKTNKSEIELEQERQKTNKSGI 176
Query: 557 KQAIQQAQAQQQKQQQKQEQQQAQQTYQEDLTHSQSALNDVASDNTIASNDTNYTNNQNT 616
+ A Q +A+Q++Q+ +QE+Q+A ++ E Q +N + Q
Sbjct: 177 ELANSQIKAEQERQKTEQEKQKANKSEIELEQQKQKTIN----------TQRDLIKEQKD 226
Query: 617 AIKEDAQGLENTNQQI 632
IKE Q + + Q+
Sbjct: 227 FIKETEQNCQEKHGQL 242
Score = 30.0 bits (66), Expect = 0.79
Identities = 29/126 (23%), Positives = 51/126 (40%), Gaps = 6/126 (4%)
Query: 414 TFDINGQDETLQET--FNKQSIITQFLGDDLQQQAQKTYQQDLSNSQSALNNAASDNKIA 471
T DI+ Q E QE NK I + +Q+ QKT + ++ Q S ++A
Sbjct: 120 TGDIDKQIELEQEKKEANKSGIKLEQERQKTEQERQKTNKSEIELEQERQKTNKSGIELA 179
Query: 472 NSDTDYTKNKNATIKKDAQGLENTNQQIAQDEQALQGDLDKLKQLANSPTGFSEQAFNQA 531
NS + + +K Q + N+ + EQ Q ++ + L F ++
Sbjct: 180 NSQIKAEQER----QKTEQEKQKANKSEIELEQQKQKTINTQRDLIKEQKDFIKETEQNC 235
Query: 532 QKQEQQ 537
Q++ Q
Sbjct: 236 QEKHGQ 241
Score = 30.0 bits (66), Expect = 0.79
Identities = 21/94 (22%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 486 KKDAQGLENTNQQIAQDEQALQGDLDKLKQLANSPTGFSEQAFNQAQKQEQQDEQTL--- 542
+K Q + TN+ + EQ Q +LANS ++ Q++++ ++ +
Sbjct: 148 QKTEQERQKTNKSEIELEQERQKTNKSGIELANSQIKAEQERQKTEQEKQKANKSEIELE 207
Query: 543 QNEEKTFNSEQEGLKQAIQQAQAQQQKQQQKQEQ 576
Q ++KT N++++ +K+ + +Q Q+K Q
Sbjct: 208 QQKQKTINTQRDLIKEQKDFIKETEQNCQEKHGQ 241
>ref|NP_224039.1| putative histidine and glutamine-rich metal-binding protein
[Helicobacter pylori J99]
Length = 77
Score = 40.8 bits (94), Expect = 4e-04
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 12/69 (17%)
Query: 529 NQAQKQEQQDEQTLQN------------EEKTFNSEQEGLKQAIQQAQAQQQKQQQKQEQ 576
+QAQ+Q+QQ + E N++Q +QA Q AQ QQQ+Q +Q+Q
Sbjct: 8 HQAQQQQQQANSQHHHHHHVHHHHYYGGEHHHHNAQQHAEQQAEQHAQQQQQQQAHQQQQ 67
Query: 577 QQAQQTYQE 585
Q+AQQ Q+
Sbjct: 68 QKAQQQNQQ 76
>ref|NP_223662.1| putative [Helicobacter pylori J99]
Length = 668
Score = 40.4 bits (93), Expect = 6e-04
Identities = 65/256 (25%), Positives = 98/256 (37%), Gaps = 51/256 (19%)
Query: 847 NITFKASDNITMDGLNYNDAETVTKMIQTGASQHSYATFDALNNISVTNSSFSDMTWGKF 906
N K S + + G N AE V K++ G S+ Y L NI+ T ++ M
Sbjct: 117 NAKIKKSTILVLKGEN---AEEVAKIL--GVSKEEY---QKLENIAQTKAANDPMY---- 164
Query: 907 SFSAKNISFSNASFSGFTNPGGSSVISANATNSLSFINSRLNGGAVYNLQANSLIFNNTQ 966
N FSN S S F + +S S NA N N GA N
Sbjct: 165 ----ANTPFSNGSDSSFYDNNPNSP-SNNAINGKDGANGSNGYGA-----------NGND 208
Query: 967 AVFNVLYSRGTSNFNATTQLLGNTNFTLSSQSLLNFNGDTTLQNNANITLGNKSQAAFKN 1026
V + S G + ++ +G+ + + +L +G N + + S ++N
Sbjct: 209 GVNGISGSNGANGSHSNNNAIGSG---IDTDGVLGVDGV-----NGSSSSSGGSVGGYEN 260
Query: 1027 SLTLDNNSNLSLDNQSVLNANNTSA---FNNQASLNIYNGSQATFNSLFFNGGTLSLNAS 1083
+ T ++N NNT FNN +S G+ F F NG T + N S
Sbjct: 261 NFTNHGSTN-----------NNTGGYDNFNNGSSSGGSLGNGGLFPIPFGNGDTNNSNNS 309
Query: 1084 SKLNA-SNASFSNNTT 1098
+ + +N S SNN T
Sbjct: 310 TNTTSPTNGSSSNNAT 325
Score = 35.0 bits (79), Expect = 0.024
Identities = 46/179 (25%), Positives = 66/179 (36%), Gaps = 26/179 (14%)
Query: 88 SSWSYQDNIESGPNSPTHNSYCLFSSTQGSGTYYLNTLTTYSAGGASFTQKFNNGTLNVG 147
S S+ DN PNSP++N+ GS Y N + S NG
Sbjct: 173 SDSSFYDN---NPNSPSNNAINGKDGANGSNGYGANGNDGVNGISGS------NGANGSH 223
Query: 148 ENIRFGGTGINGGDVGYITGTYDAQTINFNSSHLTTGNSYADGGGATLNFNAANNITINQ 207
N G+GI+ V + G N S ++G S GG NF + N
Sbjct: 224 SNNNAIGSGIDTDGVLGVDGV--------NGSSSSSGGSV---GGYENNFTNHGSTNNNT 272
Query: 208 ASFDNSHAGTQKSYMNFKGSNIKVSGSSFTDDTDGGFSFSGNSNNSTISFNQTSFNQGT 266
+DN + G+ G ++ G +G + S NS N+T N +S N T
Sbjct: 273 GGYDNFNNGSS------SGGSLGNGGLFPIPFGNGDTNNSNNSTNTTSPTNGSSSNNAT 325
Score = 30.4 bits (67), Expect = 0.60
Identities = 52/262 (19%), Positives = 97/262 (36%), Gaps = 35/262 (13%)
Query: 1089 SNASFSNNTTINLDDSVLSASNTSSLNANINFQGASQADFGGNTIIDTASFNFDSASSLN 1148
+N FSN + + D+ ++ + +++N G++ GN ++ S + + S +
Sbjct: 165 ANTPFSNGSDSSFYDNNPNSPSNNAINGKDGANGSNGYGANGNDGVNGISGSNGANGSHS 224
Query: 1149 FNN-----LTANGALNFNGYTPSLTKALMSVSG-QFVLGNNGDINLSDINIFDNITKSVT 1202
NN + +G L +G S + + SV G + N+G N ++ +DN +
Sbjct: 225 NNNAIGSGIDTDGVLGVDGVNGSSSSSGGSVGGYENNFTNHGSTN-NNTGGYDNFNNGSS 283
Query: 1203 YNILNAQKGITGISGANGYEKILFYGMKIQNATYSDNNNIQTWSFINPLNSSQIIQESIK 1262
G+ I NG T + NN+ T S N +S+ S +
Sbjct: 284 SGGSLGNGGLFPIPFGNG-------------DTNNSNNSTNTTSPTNGSSSNNATNPSSQ 330
Query: 1263 NGDLTIEVLNNPNSASNTIFNIAPELYNYQASKQN------PTGYSYDY----SDNQAGT 1312
+ + + P + N + + N Y YD+ + Q
Sbjct: 331 ENNYSSQYCKVPELSPNNTMKLDVIAKDGSCISMNALRDDTKCAYRYDFEAGKAIKQTQY 390
Query: 1313 YYL-----TSNIKGLFTPKGSQ 1329
YY+ T NI G +G+Q
Sbjct: 391 YYVDRENKTQNIGGCVDLQGAQ 412
Score = 28.1 bits (61), Expect = 3.0
Identities = 36/127 (28%), Positives = 53/127 (41%), Gaps = 16/127 (12%)
Query: 1777 SNGYVFVNNSSFSNATGGSLNFVANKSIIFNGDNTIDFSKYQGALIFASNDVSNINITTL 1836
+NG VN S SN GS + N + I +G +T G +S+ ++
Sbjct: 204 ANGNDGVNGISGSNGANGSHS---NNNAIGSGIDTDGVLGVDGVNGSSSSSGGSVGGYEN 260
Query: 1837 NATNGLSLNAG------LNNVSVQKGEIC------VNLANCPTTKNSSSTNSSVTPTNES 1884
N TN S N NN S G + + N T +++STN++ +PTN S
Sbjct: 261 NFTNHGSTNNNTGGYDNFNNGSSSGGSLGNGGLFPIPFGNGDTNNSNNSTNTT-SPTNGS 319
Query: 1885 LSVRANN 1891
S A N
Sbjct: 320 SSNNATN 326
Score = 26.9 bits (58), Expect = 6.6
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Query: 2260 NVWATGVGGASFINGGTGTLYGINVGYDRF-IKGV--IVGGYAAYGYS--GFHANITQSG 2314
N G+ G++ NG I G D + GV + G ++ G S G+ N T G
Sbjct: 207 NDGVNGISGSNGANGSHSNNNAIGSGIDTDGVLGVDGVNGSSSSSGGSVGGYENNFTNHG 266
Query: 2315 SSNVNMGVY 2323
S+N N G Y
Sbjct: 267 STNNNTGGY 275
>ref|NP_223195.1| cag island protein [Helicobacter pylori J99]
Length = 522
Score = 40.4 bits (93), Expect = 6e-04
Identities = 30/131 (22%), Positives = 60/131 (44%), Gaps = 16/131 (12%)
Query: 538 DEQTLQNEEKTFNSEQEGLKQAIQQAQAQQQKQQQKQEQQQAQQTYQEDLTHSQSALNDV 597
D + L+ ++K E+E +QA +AQ+ K+++++E++ + E+LT++ S
Sbjct: 137 DPKELEEQKKALEKEKEAKEQA---QKAQKDKREKRKEERAKNRANLENLTNAMS----- 188
Query: 598 ASDNTIASNDTNYTNNQNTAIKEDAQGLENTNQQIAQDEQALQGDLDKLKQLANSPTGFS 657
N N +NN+N + Q +Q ++ Q + LKQ+ +
Sbjct: 189 --------NPQNLSNNKNLSELIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA 240
Query: 658 EQAFNQAQKQE 668
E+A Q K +
Sbjct: 241 EEAVRQRAKDK 251
Score = 36.6 bits (83), Expect = 0.008
Identities = 29/146 (19%), Positives = 66/146 (44%), Gaps = 4/146 (2%)
Query: 452 QDLSNSQSALNNAASDNKIANSDTDYTKNKNATIKKDAQGLENTNQQIAQDEQAL-QGDL 510
Q+ ++ + +A ++ K K A K+ AQ + ++ ++E+A + +L
Sbjct: 123 QEFLKTKKLIVDAPDPKELEEQKKALEKEKEA--KEQAQKAQKDKREKRKEERAKNRANL 180
Query: 511 DKLKQLANSPTGFSEQAFNQAQKQEQQDEQTLQNEEKTFNSEQEGLKQAIQQAQAQQQKQ 570
+ L ++P S N ++ +QQ E L E+ + +++ A++Q + +KQ
Sbjct: 181 ENLTNAMSNPQNLSNNK-NLSELIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQ 239
Query: 571 QQKQEQQQAQQTYQEDLTHSQSALND 596
++ +Q+A+ SQ + D
Sbjct: 240 AEEAVRQRAKDKISIKTDKSQKSPED 265
>ref|NP_223567.1| Outer membrane protein/porin [Helicobacter pylori J99]
Length = 527
Score = 39.7 bits (91), Expect = 0.001
Identities = 83/325 (25%), Positives = 126/325 (38%), Gaps = 77/325 (23%)
Query: 781 RSFSVNIQNGTLIIGNNTESVNSNGLIWIGHGGFGYITGTFSAANIYLT--NNFKTGEGV 838
++ S NI NNT S N + + + A++YLT N+F
Sbjct: 161 KTLSQNISKNIFQGDNNTTSANLSNQL-----------SELNTASVYLTYMNSFLN---- 205
Query: 839 SNSDGGGA--NITFKASDN-ITMDGLNYNDAETVTKMIQTGASQHSYATFDALNNISVTN 895
+N+ GG N T +A +N +T + Y + M +G S + A DA V N
Sbjct: 206 ANNQAGGIFQNNTNQAYENGVTAQQIAYVLKQASITMGPSGDSGAAGAFLDAALAQHVFN 265
Query: 896 SSFS--DMTWGKFSFSAKNISFSNASFSGFTNPGGSSVISANATNSLSFINSRLNGGAVY 953
S+ + D++ +F+ +NI N+ N+L+ N
Sbjct: 266 SANAGNDLSAKEFTSLVQNIV-------------------NNSQNALTLAN--------- 297
Query: 954 NLQANSLIFNNTQAVFNVLYSRGTSNFNATTQLLGNTNFTLSSQSLLNFNGDTTLQNN-- 1011
N+ I N+T + V Y G + +TQLL NT TL+ + LN L+ N
Sbjct: 298 ----NANISNSTG--YQVSYG-GNIDQARSTQLLNNTTNTLAKVTALN----NELKANPW 346
Query: 1012 -ANITLGNKSQA-AFKNSLT-------LDNNSNLSLDNQSVLNANNTSAFN----NQASL 1058
N GN SQ AF +T N N+ L + N N NQ +L
Sbjct: 347 LGNFAAGNSSQVNAFNGFITKIGYKQFFGENKNVGLRYYGFFSYNGAGVGNGPTYNQVNL 406
Query: 1059 NIYN-GSQATFNSLFFNGGTLSLNA 1082
Y G+ +N + G+ SLNA
Sbjct: 407 LTYGVGTDVLYNVFSRSFGSRSLNA 431
Score = 37.4 bits (85), Expect = 0.005
Identities = 71/301 (23%), Positives = 112/301 (36%), Gaps = 56/301 (18%)
Query: 929 SSVISANATNSLSFINSRLNGGAVYNLQANSLIFNNTQAVFNVLYSRGTSNFN---ATTQ 985
+ ++++ TN+ + IN GG V N L N + ++ + T+N + +T
Sbjct: 73 AGLLNSTTTNNTN-INIAGTGGNVAGTLGN-LFMNQLGNLIDLYPTLKTNNLHQCGSTNS 130
Query: 986 LLGNTNFTLSSQSLLNFNGDTTLQNNANITLGNKSQAAFKNSLTLDNN-SNLSLDNQ--- 1041
G T ++ S F G+ L N ++ SQ KN DNN ++ +L NQ
Sbjct: 131 GNGATAAAATNNSPC-FQGNLALYNEMVDSIKTLSQNISKNIFQGDNNTTSANLSNQLSE 189
Query: 1042 ------------SVLNANNTSA--FNNQASLNIYNGSQATFNSLFFNGGTLSLNAS---- 1083
S LNANN + F N + NG A + ++++ S
Sbjct: 190 LNTASVYLTYMNSFLNANNQAGGIFQNNTNQAYENGVTAQQIAYVLKQASITMGPSGDSG 249
Query: 1084 ---------------SKLNASNASFSNNTTINLDDSVLSASNTSSL--NANINFQGASQA 1126
+ NA N + T + + V ++ N +L NANI+ Q
Sbjct: 250 AAGAFLDAALAQHVFNSANAGNDLSAKEFTSLVQNIVNNSQNALTLANNANISNSTGYQV 309
Query: 1127 DFGGNTIIDTASFNFDSASSLNFNNLTANGALNFNGYTPSLTKALMSVSGQFVLGNNGDI 1186
+GG N D A S N T N L KA + G F GN+ +
Sbjct: 310 SYGG---------NIDQARSTQLLNNTTNTLAKVTALNNEL-KANPWL-GNFAAGNSSQV 358
Query: 1187 N 1187
N
Sbjct: 359 N 359
Score = 36.2 bits (82), Expect = 0.011
Identities = 81/352 (23%), Positives = 132/352 (37%), Gaps = 60/352 (17%)
Query: 184 GNSYADGGGATLNFNAANNITINQASFDNSHAGTQKS-YMNFKGSNIKVSGSSFTDDTDG 242
G A+ LN NN IN A + AGT + +MN G+ I + + T++
Sbjct: 65 GKIKAEELAGLLNSTTTNNTNINIAGTGGNVAGTLGNLFMNQLGNLIDLYPTLKTNNLHQ 124
Query: 243 -GFSFSGNSNNSTISFNQTSFNQGTYHFSNSATLSFNHSAFNQGTYNFNSTQSAFNNSAF 301
G + SGN + + N + QG N S T + N +++ F
Sbjct: 125 CGSTNSGNGATAAAATNNSPCFQGNLALYNEMVDSIK-------TLSQNISKNIFQG--- 174
Query: 302 NQGTYHFNGNASFDNDTFNQGTYSFNTSKVSFSGINTLNSSSPFASLKGSVSFGSDAIFN 361
DN+T TS + ++ LN++S + + S ++
Sbjct: 175 -------------DNNT---------TSANLSNQLSELNTASVYLTYMNSFLNANNQAGG 212
Query: 362 LNQTLNNQTYDILTTNGAIQYGVYQSYLWDLINYKGDKAISHVEVGNNTYDVTFDINGQD 421
+ Q NQ Y+ T I Y + Q+ + + GD + + D
Sbjct: 213 IFQNNTNQAYENGVTAQQIAYVLKQASI--TMGPSGDSGAAGAFL--------------D 256
Query: 422 ETL-QETFNKQSIITQFLGDDLQQQAQKTYQQDL-SNSQSALNNAASDNKIANSDTDYTK 479
L Q FN + G+DL + + Q++ +NSQ+AL A + N ++ +
Sbjct: 257 AALAQHVFNSANA-----GNDLSAKEFTSLVQNIVNNSQNALTLANNANISNSTGYQVSY 311
Query: 480 NKNATIKKDAQGLENTNQQIAQDEQALQGDLDKLKQLANSPTGFSEQ--AFN 529
N + Q L NT +A+ AL +L L N G S Q AFN
Sbjct: 312 GGNIDQARSTQLLNNTTNTLAK-VTALNNELKANPWLGNFAAGNSSQVNAFN 362
Score = 33.5 bits (75), Expect = 0.071
Identities = 66/272 (24%), Positives = 113/272 (41%), Gaps = 59/272 (21%)
Query: 1831 INITTLNATNGLSLNAGLNNVSVQKGEICVN-LANC----PTTKNSS-----STNS---- 1876
+N TT N TN +++ NV+ G + +N L N PT K ++ STNS
Sbjct: 76 LNSTTTNNTN-INIAGTGGNVAGTLGNLFMNQLGNLIDLYPTLKTNNLHQCGSTNSGNGA 134
Query: 1877 -SVTPTNESLSVRANNFTF------LGAIASNGAIDLSQVKNNSVIDTLNLNENAALQAN 1929
+ TN S + N + + ++ N + ++ Q NN+ L+ N+ + L
Sbjct: 135 TAAAATNNSPCFQGNLALYNEMVDSIKTLSQNISKNIFQGDNNTTSANLS-NQLSELNTA 193
Query: 1930 N--LTITNAFNNASNSTANINGNFT---------------LNQQATLSTNASG------- 1965
+ LT N+F NA+N I N T + +QA+++ SG
Sbjct: 194 SVYLTYMNSFLNANNQAGGIFQNNTNQAYENGVTAQQIAYVLKQASITMGPSGDSGAAGA 253
Query: 1966 -------LNVMGNFNSYGDLVFNLSHSVSHAIINAQGSATIMANNNNPLIQFNTSSKEVG 2018
+V + N+ DL S+ I+N +A +ANN N N++ +V
Sbjct: 254 FLDAALAQHVFNSANAGNDLSAKEFTSLVQNIVNNSQNALTLANNAN---ISNSTGYQVS 310
Query: 2019 TYTLIDSAKA--IYYGYNNQITGGSSLDNYLK 2048
ID A++ + N + ++L+N LK
Sbjct: 311 YGGNIDQARSTQLLNNTTNTLAKVTALNNELK 342
Score = 31.2 bits (69), Expect = 0.35
Identities = 79/342 (23%), Positives = 129/342 (37%), Gaps = 68/342 (19%)
Query: 1105 VLSASNTSSLNANINFQGASQADFGGNTIIDTASFNFDSASSLNFNNLTANGALNF-NGY 1163
+L+++ T++ N NI G + A GN ++ D +L NNL G+ N NG
Sbjct: 75 LLNSTTTNNTNINIAGTGGNVAGTLGNLFMNQLGNLIDLYPTLKTNNLHQCGSTNSGNGA 134
Query: 1164 T-PSLTKALMSVSGQFVLGN------------------NGDINLSDINIFDNITKSVTYN 1204
T + T G L N GD N + N+ + +++ T +
Sbjct: 135 TAAAATNNSPCFQGNLALYNEMVDSIKTLSQNISKNIFQGDNNTTSANLSNQLSELNTAS 194
Query: 1205 I--------LNAQKGITGISGAN---GYE-----KILFYGMKIQNATYSDNNNI-QTWSF 1247
+ LNA GI N YE + + Y +K + T + + +F
Sbjct: 195 VYLTYMNSFLNANNQAGGIFQNNTNQAYENGVTAQQIAYVLKQASITMGPSGDSGAAGAF 254
Query: 1248 INPLNSSQIIQESIKNGDLTIE-----VLNNPNSASNTIFNIAPELYNYQASKQNPTGYS 1302
++ + + + DL+ + V N N++ N + L N A+ N TGY
Sbjct: 255 LDAALAQHVFNSANAGNDLSAKEFTSLVQNIVNNSQNAL-----TLAN-NANISNSTGYQ 308
Query: 1303 YDYSDN--QAGTYYL---TSNIKGLFTPKGSQTPQAP--GTYSPFNQPLSSLNIYN---- 1351
Y N QA + L T+N T ++ P G ++ N S +N +N
Sbjct: 309 VSYGGNIDQARSTQLLNNTTNTLAKVTALNNELKANPWLGNFAAGNS--SQVNAFNGFIT 366
Query: 1352 ----KGFSSENLKTLL---GILSQNSATLKEMIESNQLDNIT 1386
K F EN L G S N A + NQ++ +T
Sbjct: 367 KIGYKQFFGENKNVGLRYYGFFSYNGAGVGNGPTYNQVNLLT 408
Score = 29.6 bits (65), Expect = 1.0
Identities = 68/298 (22%), Positives = 110/298 (36%), Gaps = 47/298 (15%)
Query: 1708 IKKLESQGLVSNIINNI--ISQGGLSGVYNQGLGSVLPPSLQNALKENDLGTLLSPRGLH 1765
IK E GL+++ N I+ G G LG++ L N + DL L LH
Sbjct: 67 IKAEELAGLLNSTTTNNTNINIAGTGGNVAGTLGNLFMNQLGNLI---DLYPTLKTNNLH 123
Query: 1766 DFWQKGYFN------FLSNGYVFVNNSSFSNATGGSLNFVANK--SIIFNGDNTIDFSKY 1817
N +N F N + N S+ ++ IF GDN +
Sbjct: 124 QCGSTNSGNGATAAAATNNSPCFQGNLALYNEMVDSIKTLSQNISKNIFQGDNNTTSANL 183
Query: 1818 QGALIFASNDVSNINITTLNATNGLSLNAGLNNVSVQKGEICVNLANCPTTKNSSSTNSS 1877
SN +S +N ++ T +N+ LN + Q G I N N ++ +
Sbjct: 184 -------SNQLSELNTASVYLTY---MNSFLN-ANNQAGGIFQNNTNQAYENGVTAQQIA 232
Query: 1878 VTPTNESLSVRANNFT-----FLGAI-------ASNGAIDLSQVKNNSVIDTL-NLNENA 1924
S+++ + + FL A ++N DLS + S++ + N ++NA
Sbjct: 233 YVLKQASITMGPSGDSGAAGAFLDAALAQHVFNSANAGNDLSAKEFTSLVQNIVNNSQNA 292
Query: 1925 ALQANNLTITNAFNNASNSTANI----------NGNFTLNQQATLSTNASGLNVMGNF 1972
ANN I+N+ + NI N TL + L+ +GNF
Sbjct: 293 LTLANNANISNSTGYQVSYGGNIDQARSTQLLNNTTNTLAKVTALNNELKANPWLGNF 350
>ref|NP_223830.1| putative [Helicobacter pylori J99]
Length = 383
Score = 38.5 bits (88), Expect = 0.002
Identities = 21/106 (19%), Positives = 52/106 (48%), Gaps = 2/106 (1%)
Query: 527 AFNQAQKQEQQDEQTLQNEEKTFNSEQEGLKQAIQQAQAQQQKQQQKQEQQQAQQTYQED 586
A +Q++K+ Q ++ +N N + G++ ++ + +Q+KQ+ +QE+Q+ +Q Q+
Sbjct: 95 ADDQSKKEVAQAQKEAENARDRAN--KSGIELEQEEQKTEQEKQKTEQEKQKTEQEKQKT 152
Query: 587 LTHSQSALNDVASDNTIASNDTNYTNNQNTAIKEDAQGLENTNQQI 632
Q + + I +N+ + +++ Q NT + +
Sbjct: 153 EQEKQKTEQEKQKTSNIETNNQIKVEQEQQKTEQEKQKTNNTQKDL 198
Score = 37.4 bits (85), Expect = 0.005
Identities = 26/125 (20%), Positives = 56/125 (44%), Gaps = 13/125 (10%)
Query: 440 DDLQQQAQKTYQQDLSNSQSALNNAASDNKIANSDTDYTKNKNATIKKDAQGLENTNQQI 499
DD ++ Q++ N++ N + + + T+ K K +++ Q E Q+
Sbjct: 96 DDQSKKEVAQAQKEAENARDRANKSGIELEQEEQKTEQEKQKT---EQEKQKTEQEKQKT 152
Query: 500 AQDEQALQGDLDKLKQLANSPTGFSEQAFNQAQKQEQQDEQTLQNEEKTFNSEQEGLKQA 559
Q++Q + + K + N K EQ+ ++T Q ++KT N++++ + +A
Sbjct: 153 EQEKQKTEQEKQKTSNIET----------NNQIKVEQEQQKTEQEKQKTNNTQKDLVNKA 202
Query: 560 IQQAQ 564
Q Q
Sbjct: 203 EQNCQ 207
Score = 37.0 bits (84), Expect = 0.006
Identities = 25/105 (23%), Positives = 55/105 (51%), Gaps = 9/105 (8%)
Query: 493 ENTNQQIAQDEQALQGDLDKLKQLANSPTGFSEQAFNQAQKQEQQDEQTLQNEEKT---- 548
+ + +++AQ ++ + D+ + ++ + QK EQ+ ++T Q ++KT
Sbjct: 97 DQSKKEVAQAQKEAENARDRANKSGIELEQEEQKTEQEKQKTEQEKQKTEQEKQKTEQEK 156
Query: 549 FNSEQEGLK----QAIQQAQAQQQKQQQKQEQQQAQQTYQEDLTH 589
+EQE K + Q + +Q++Q+ +QE+Q+ T Q+DL +
Sbjct: 157 QKTEQEKQKTSNIETNNQIKVEQEQQKTEQEKQKTNNT-QKDLVN 200
Score = 36.2 bits (82), Expect = 0.011
Identities = 23/106 (21%), Positives = 49/106 (45%), Gaps = 4/106 (3%)
Query: 596 DVASDNTIASNDTNYTNNQNTAIKEDAQGLENTNQQIAQDEQALQGDLDKLKQLANSPTG 655
+VA A N + N ++++ Q E Q+ Q++Q + + K +Q
Sbjct: 102 EVAQAQKEAENARDRANKSGIELEQEEQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTEQ 161
Query: 656 FSEQAFN----QAQKQEQQDEQTLQNEEKTFNSEQERLKQAIANAK 697
++ N K EQ+ ++T Q ++KT N++++ + +A N +
Sbjct: 162 EKQKTSNIETNNQIKVEQEQQKTEQEKQKTNNTQKDLVNKAEQNCQ 207
Score = 34.3 bits (77), Expect = 0.042
Identities = 31/111 (27%), Positives = 53/111 (46%), Gaps = 12/111 (10%)
Query: 524 SEQAFNQAQKQ----EQQDEQTLQNEEKTFNSEQEGLKQAIQQAQAQQQKQQQKQEQQQA 579
+E A ++A K EQ++++T Q ++KT EQE K Q +Q+ +Q+KQ+ +Q
Sbjct: 110 AENARDRANKSGIELEQEEQKTEQEKQKT---EQEKQKTE----QEKQKTEQEKQKTEQE 162
Query: 580 QQTYQEDLTHSQSALNDVASDNTIASNDTNYTNNQNTAIKEDAQGLENTNQ 630
+Q T++Q + TN T ++ K + EN NQ
Sbjct: 163 KQKTSNIETNNQIKVEQEQQKTEQEKQKTNNT-QKDLVNKAEQNCQENHNQ 212
Score = 33.1 bits (74), Expect = 0.093
Identities = 52/225 (23%), Positives = 82/225 (36%), Gaps = 30/225 (13%)
Query: 439 GDDLQQQAQKTYQQDLSNSQSALNNAASDNKIANSDTDYTKNKNATIKKDAQGLENTNQ- 497
G +L+Q+ QKT Q+ Q K T+ K K K+ +E NQ
Sbjct: 121 GIELEQEEQKTEQEKQKTEQEKQKTEQEKQK-----TEQEKQKTEQEKQKTSNIETNNQI 175
Query: 498 QIAQDEQALQGDLDKL----KQLANSPTGFSEQAFNQ--AQKQEQQDEQTLQNEEKTFNS 551
++ Q++Q + + K K L N ++ NQ +K + ++ E +
Sbjct: 176 KVEQEQQKTEQEKQKTNNTQKDLVNKAEQNCQENHNQFFIKKLGIKAGIAIEIEAECKTP 235
Query: 552 EQEGLKQA-IQQAQAQQQKQQQKQEQQQAQ------QTYQEDLTHSQSALN---DVASDN 601
+ Q IQ KQ Q +AQ Q E L +SQ A+ D +
Sbjct: 236 KPTKTNQTPIQPKHLPNSKQPHSQRGSKAQELIAYLQKELESLPYSQKAIAKQVDFYRPS 295
Query: 602 TIA--------SNDTNYTNNQNTAIKEDAQGLENTNQQIAQDEQA 638
+IA N T +N I+ AQ + + D QA
Sbjct: 296 SIAYLELDPRDFNATEEWQKENLKIRSKAQAKMLEMRSLKPDPQA 340
Score = 28.1 bits (61), Expect = 3.0
Identities = 16/72 (22%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 626 ENTNQQIAQDEQALQGDLDKLKQLANSPTGFSEQAFNQAQKQEQQDEQTLQNEEKTFNSE 685
+ + +++AQ ++ + D+ + ++ + QK EQ+ ++T Q ++KT +
Sbjct: 97 DQSKKEVAQAQKEAENARDRANKSGIELEQEEQKTEQEKQKTEQEKQKTEQEKQKTEQEK 156
Query: 686 Q--ERLKQAIAN 695
Q E+ KQ +N
Sbjct: 157 QKTEQEKQKTSN 168
>ref|NP_223759.1| putative [Helicobacter pylori J99]
Length = 267
Score = 37.7 bits (86), Expect = 0.004
Identities = 36/168 (21%), Positives = 73/168 (43%), Gaps = 19/168 (11%)
Query: 525 EQAFNQAQKQEQQDEQTLQNEEKTFNSEQEGLKQAIQQAQAQQQKQQQKQEQQQAQQTYQ 584
E+ F++ +EQ + N T N+ E +K I++ + Q + + +YQ
Sbjct: 96 ERFFSEFNTSMHANEQEVTN---TLNANAENIKSEIKKLE-----NQLIETTTRLLTSYQ 147
Query: 585 EDLTHSQSALNDVASDN--------TIASNDTN--YTNNQNTAIKEDAQGLENTNQQIAQ 634
L ++ N+ + N T A N+ N +NNQ AI + N N +I+
Sbjct: 148 IFLNQARDNANNQITKNKTQSLEAITQAKNNANNEISNNQTQAITNITEAKTNANNEISN 207
Query: 635 DEQALQGDLDKLKQLANSPTGFSEQ-AFNQAQKQEQQDEQTLQNEEKT 681
++ ++++ K+ A + ++Q A N +++ Q + +KT
Sbjct: 208 NQTQAITNINEAKESATTQINANKQEAINNITQEKTQATSEITEAKKT 255
Score = 36.2 bits (82), Expect = 0.011
Identities = 35/156 (22%), Positives = 67/156 (42%), Gaps = 18/156 (11%)
Query: 409 NTYDVTFDINGQDETLQETFNKQSIITQFLGDDLQQQAQKTYQQDLSNSQSALNNAASDN 468
N +VT +N E ++ K L+ Q +T + L++ Q LN A
Sbjct: 109 NEQEVTNTLNANAENIKSEIKK-----------LENQLIETTTRLLTSYQIFLNQARD-- 155
Query: 469 KIANSDTDYTKNKNATIKKDAQGLENTNQQIAQDEQALQGDLDKLKQLANSPTGFSE-QA 527
N++ TKNK +++ Q N N +I+ ++ ++ + K AN+ ++ QA
Sbjct: 156 ---NANNQITKNKTQSLEAITQAKNNANNEISNNQTQAITNITEAKTNANNEISNNQTQA 212
Query: 528 F-NQAQKQEQQDEQTLQNEEKTFNSEQEGLKQAIQQ 562
N + +E Q N+++ N+ + QA +
Sbjct: 213 ITNINEAKESATTQINANKQEAINNITQEKTQATSE 248
Score = 32.0 bits (71), Expect = 0.21
Identities = 19/87 (21%), Positives = 30/87 (33%)
Query: 985 QLLGNTNFTLSSQSLLNFNGDTTLQNNANITLGNKSQAAFKNSLTLDNNSNLSLDNQSVL 1044
Q N N ++ + T +NNAN + N A N N+N + N
Sbjct: 152 QARDNANNQITKNKTQSLEAITQAKNNANNEISNNQTQAITNITEAKTNANNEISNNQTQ 211
Query: 1045 NANNTSAFNNQASLNIYNGSQATFNSL 1071
N + A+ I Q N++
Sbjct: 212 AITNINEAKESATTQINANKQEAINNI 238
Score = 31.6 bits (70), Expect = 0.27
Identities = 24/85 (28%), Positives = 32/85 (37%), Gaps = 6/85 (7%)
Query: 970 NVLYSRGTSNFNATTQLLGNTNFTLSSQSLLNFNGDTTLQNNANITLGNKSQAAFKNSLT 1029
N + T + A TQ N N +S+ T + NAN + N A N
Sbjct: 159 NQITKNKTQSLEAITQAKNNANNEISNNQTQAITNITEAKTNANNEISNNQTQAITNI-- 216
Query: 1030 LDNNSNLSLDNQSVLNANNTSAFNN 1054
N + S Q +NAN A NN
Sbjct: 217 --NEAKESATTQ--INANKQEAINN 237
Score = 31.6 bits (70), Expect = 0.27
Identities = 23/80 (28%), Positives = 36/80 (44%), Gaps = 2/80 (2%)
Query: 1040 NQSVLNANNTSAFNNQASLNIYNGSQATFNSLFFNGGTLSLN--ASSKLNASNASFSNNT 1097
NQ+ NANN N SL ++ N+ N T ++ +K NA+N +N T
Sbjct: 151 NQARDNANNQITKNKTQSLEAITQAKNNANNEISNNQTQAITNITEAKTNANNEISNNQT 210
Query: 1098 TINLDDSVLSASNTSSLNAN 1117
+ + S T+ +NAN
Sbjct: 211 QAITNINEAKESATTQINAN 230
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 37.7 bits (86), Expect = 0.004
Identities = 48/188 (25%), Positives = 75/188 (39%), Gaps = 24/188 (12%)
Query: 453 DLSNSQSALNNAASDNKIANSDTDYTKNKNATIKKD---------AQGLENTNQQIAQDE 503
+L N +S LN A +N IA S+ D+ I+ + AQ L++ +I D+
Sbjct: 234 NLDNLESLLN-AIRNNTIA-SEPDFRSRLLEAIQNNDPLKDSIVGAQLLKDPTTKIFYDK 291
Query: 504 QALQGDLDKLKQLANS-------PTGFSEQAFNQAQKQEQQDEQTLQNE---EKTFNSEQ 553
L+ K+ ++ + T + AFN Q D + N T S+
Sbjct: 292 FQLKISPKKVLEILENRLKKSIETTNETLNAFNVLDSQAI-DLNAISNSVGLNPTQESKI 350
Query: 554 EGLKQAIQQAQAQQQKQQQKQEQQQAQQTYQEDLTHSQSALNDVASDNTIASNDTNYTNN 613
+ AQ Q ++Q QEQ +QT QE T Q+ + T DT N
Sbjct: 351 TDNSVELNNAQEQTAQEQTTQEQTTQEQTTQEQTTQEQTTQEQTTQEQTTQEQDTQ--EN 408
Query: 614 QNTAIKED 621
T IK++
Sbjct: 409 APTTIKQE 416
Score = 32.7 bits (73), Expect = 0.12
Identities = 37/132 (28%), Positives = 55/132 (41%), Gaps = 23/132 (17%)
Query: 623 QGLENTNQQI----AQDEQALQGDLDKLKQLAN-SPTGFSEQA-----FNQAQKQEQQDE 672
+ +E TN+ + D QA+ DL+ + +PT S+ N AQ+Q Q E
Sbjct: 311 KSIETTNETLNAFNVLDSQAI--DLNAISNSVGLNPTQESKITDNSVELNNAQEQTAQ-E 367
Query: 673 QTLQNEEKTFNSEQERLKQAIANAKPTS--------PTPSHAPTPTKHTAPNTPPNKVPP 724
QT Q + + QE+ Q + T+ T +APT K P TP +P
Sbjct: 368 QTTQEQTTQEQTTQEQTTQEQTTQEQTTQEQTTQEQDTQENAPTTIKQETPITP--AIPL 425
Query: 725 TPPTQNPPAESV 736
P P+E V
Sbjct: 426 NPKIDFKPSEEV 437
>ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helicobacter pylori J99]
Length = 949
Score = 37.7 bits (86), Expect = 0.004
Identities = 55/265 (20%), Positives = 107/265 (39%), Gaps = 31/265 (11%)
Query: 444 QQAQKTYQQDLSNSQSALNNAASDNKIANSDTDYTKNKNATIKKDAQGLENTNQQIAQDE 503
+QA K Y+ + + + A K D N AT K A+ T ++
Sbjct: 44 EQAGKLYKYIVDGIKEQIQ-ANQPTKNPKQDNKDDLNTAATPKPLAKKASKTPKKEETKA 102
Query: 504 QALQGDLDKLKQLANSPTGFSEQAFNQAQKQEQQDEQTLQNEEKTFNSEQEGLKQAIQQA 563
Q + K+ A +P +K+E + T +N+ E +A+ +
Sbjct: 103 QPKPKKTKEKKKEAPAPI---------IKKKEIEIVNTFENQTPLV----ENTPKAVSHS 149
Query: 564 QAQQQKQQQKQEQQQAQQTYQEDLTHSQSALNDVASDNTIASNDTNYTNNQNTAIKEDAQ 623
Q ++ KQ+ ++ Q+ S+ ALN + NT +N+ N +N + A KE ++
Sbjct: 150 QIEKAKQKLQEIQK------------SREALNKLTQSNTNTTNNANSASNVSNAKKEISE 197
Query: 624 GLENTNQQIAQDEQALQGDLDKLKQLANSPTGFSEQAFNQAQKQEQQDEQTLQNEEKTFN 683
++ Q+I + E + ++ + + +E + +++K Q ++ +K +
Sbjct: 198 -VKKQEQEIKRHENIKRRTGFRVIKRNDETENETENSVTESKKPTQSAAAIFEDIKKEW- 255
Query: 684 SEQERLKQAIANAKPTSPTPSHAPT 708
QE+ KQ K S P PT
Sbjct: 256 --QEKDKQETKKTKKPS-KPKATPT 277
>ref|NP_223761.1| putative [Helicobacter pylori J99]
Length = 1154
Score = 36.2 bits (82), Expect = 0.011
Identities = 36/177 (20%), Positives = 75/177 (42%), Gaps = 15/177 (8%)
Query: 393 INYK-GDKAISHVEVGNNTYDVTFDINGQDETLQETFNK-QSIITQFLGDD-----LQQQ 445
+N K G+ I++ ++ N Y V N D L+ N+ + +I+ F + ++Q
Sbjct: 169 VNVKNGESPITYEDIANYRYIV----NNADAILRTLDNEDKEVISAFKQINGYAVVVEQA 224
Query: 446 AQKTYQQDLSNSQSALNNAASDNKIANSDTDYTKNKNATIK----KDAQGLENTNQQIAQ 501
K + L + + +N + T N +A + + EN Q+
Sbjct: 225 INKKNELVLKTMYKSNGDYKDNNAYKKFSSTLTLNADAKVNHGLSSHSGATENLTQKPLT 284
Query: 502 DEQALQGDLDKLKQLANSPTGFSEQAFNQAQKQEQQDEQTLQNEEKTFNSEQEGLKQ 558
++ L D + L + PT S A+K + + + LQ+E++ ++++ LK+
Sbjct: 285 SQEDLLKDTENLNETTPKPTHLSPLELANAEKLAKLESEQLQSEQEFLKAKEQELKR 341
Score = 35.4 bits (80), Expect = 0.019
Identities = 35/158 (22%), Positives = 61/158 (38%), Gaps = 8/158 (5%)
Query: 540 QTLQNEEKTFNSEQEGLKQAIQQAQAQQQKQQQKQEQQQAQQTYQEDLTHSQSALNDVAS 599
+TL NE+K S KQ A +Q +K E +A +S
Sbjct: 198 RTLDNEDKEVIS---AFKQINGYAVVVEQAINKKNELVLKTMYKSNGDYKDNNAYKKFSS 254
Query: 600 DNTIASNDTNYTNNQNTAIKEDAQGLENTNQQIAQDEQALQGDLDKLKQLANSPTGFSEQ 659
T+ N N + + EN Q+ ++ L D + L + PT S
Sbjct: 255 TLTL-----NADAKVNHGLSSHSGATENLTQKPLTSQEDLLKDTENLNETTPKPTHLSPL 309
Query: 660 AFNQAQKQEQQDEQTLQNEEKTFNSEQERLKQAIANAK 697
A+K + + + LQ+E++ ++++ LK+ A K
Sbjct: 310 ELANAEKLAKLESEQLQSEQEFLKAKEQELKRKEALKK 347
Score = 26.9 bits (58), Expect = 6.6
Identities = 64/305 (20%), Positives = 118/305 (37%), Gaps = 58/305 (19%)
Query: 822 SAANIYLTNN-FKTGEGVSNSDGGGANITFKASDNITMDGLNYNDAETVTKMIQTGASQH 880
SA N TNN K E ++N +AS+ I ++++ + + I+
Sbjct: 40 SAKNSKFTNNTLKIIEELNNG-------VKQASEEIKEKAFDFSNEKLTNEQIK------ 86
Query: 881 SYATFDALNNISVTNSSFSDMTWGKFSFSAKNISFSNASFSGFTNPGGSSVISANATNSL 940
+ LNN + S +T+G + + + + F + + +I A+N
Sbjct: 87 -----ELLNNAKIPTSGRDAITFGTNNLNPEMVEFLHKN--------NKKMIIEKASNKE 133
Query: 941 SFINSRLNGGAVYNLQANSLIFNNTQAVFNVLYSRGTSNFNATTQLLGNTNFTLSSQSLL 1000
+ N N++A+ + A+ ++L G ++ N T +++ +
Sbjct: 134 LELLKDANFKHPENIRASL----DHDAIAHILKRHGVNSVNVKNGESPITYEDIANYRYI 189
Query: 1001 NFNGDTTLQNNANITLGNKSQ---AAFK--NSLTLDNNSNLSLDNQSVLNANNTSAFNNQ 1055
N D L+ TL N+ + +AFK N + ++ N+ VL S
Sbjct: 190 VNNADAILR-----TLDNEDKEVISAFKQINGYAVVVEQAINKKNELVLKTMYKS----- 239
Query: 1056 ASLNIYNGSQATFNSLFFNGGTLSLNASSKLNASNASFSNNTTINLDDSVLSA-----SN 1110
NG N+ TL+LNA +K+N +S S T NL L++ +
Sbjct: 240 ------NGDYKDNNAYKKFSSTLTLNADAKVNHGLSSHS-GATENLTQKPLTSQEDLLKD 292
Query: 1111 TSSLN 1115
T +LN
Sbjct: 293 TENLN 297
>ref|NP_223176.1| putative [Helicobacter pylori J99]
Length = 450
Score = 36.2 bits (82), Expect = 0.011
Identities = 34/216 (15%), Positives = 96/216 (43%), Gaps = 13/216 (6%)
Query: 479 KNKNATIKKDAQGLENTNQQIAQDEQALQGDLDKLKQLANSPTGFSEQAFNQAQKQEQQD 538
K K I+K + ++ + ++A++ + N+PT E+ + +A+++
Sbjct: 241 KRKEVRIEKKEERIDARENKREIKQEAIKEPKKANQGTENAPT-LEEKNYQKAERKFDAK 299
Query: 539 EQTLQNEEKTFNSEQEGLKQAIQQAQAQQQKQQQKQEQQQAQQTYQEDLTHSQSALNDVA 598
E+ ++ ++ ++ ++ + + ++ +K+ +++ + + +A +
Sbjct: 300 EERRRSRDERKKTKATKKAMEFEEREKEHDERDEKETEERRKALEMDKGNEKVNAKENER 359
Query: 599 SDNTIASNDTNYTNN------QNTAI-KEDAQGLENTNQQIAQDEQALQGDLDKLKQLAN 651
N ++N+ + NN +NT++ KE A E ++++ L+ + K K A
Sbjct: 360 EINQESANEPSSENNATLKDTENTSVLKESAAKKEAPKPSSKEEKRRLKEEKKKAK--AE 417
Query: 652 SPTGFSEQAFNQAQKQEQQDEQTLQNEEKTFNSEQE 687
EQ +A++ +++DE+ L+ K ++
Sbjct: 418 QRAREFEQ---RAREHQERDEKELEERRKALEMNKK 450
Score = 31.6 bits (70), Expect = 0.27
Identities = 26/160 (16%), Positives = 68/160 (42%), Gaps = 12/160 (7%)
Query: 447 QKTYQQ-----DLSNSQSALNNAASDNKIANSDTDYTKNKNATIKKDAQGLENTNQQIAQ 501
+K YQ+ D + + K ++ + + ++D + E + +
Sbjct: 286 EKNYQKAERKFDAKEERRRSRDERKKTKATKKAMEFEEREKEHDERDEKETEERRKALEM 345
Query: 502 DE-----QALQGDLDKLKQLANSPTGFSEQAFNQAQKQEQQDEQTLQNEEKTFNSEQEG- 555
D+ A + + + ++ AN P+ + + E + E +S++E
Sbjct: 346 DKGNEKVNAKENEREINQESANEPSSENNATLKDTENTSVLKESAAKKEAPKPSSKEEKR 405
Query: 556 -LKQAIQQAQAQQQKQQQKQEQQQAQQTYQEDLTHSQSAL 594
LK+ ++A+A+Q+ ++ +Q ++ Q+ +++L + AL
Sbjct: 406 RLKEEKKKAKAEQRAREFEQRAREHQERDEKELEERRKAL 445
>ref|NP_224090.1| putative [Helicobacter pylori J99]
Length = 841
Score = 35.8 bits (81), Expect = 0.014
Identities = 55/234 (23%), Positives = 91/234 (38%), Gaps = 13/234 (5%)
Query: 829 TNNFKTGEGVSNSDGGGANITFKASDNITMDGLNYNDAETVTKMIQTGASQHSYATFDAL 888
T N +T +N++ G D I D L ND V M+Q + + D
Sbjct: 100 TTNNETPNDTNNAEAEGQIENLDLPDLIGKDSLKRNDESQVDAMMQKASLLYEQGQKDEA 159
Query: 889 NNISVTNSSFSDMTWGKFSFSAKNISFSNASFSGFTNPGGSSVISANATNSLSFINSRLN 948
++ +SFS G S + I F F+G + SS I++ S+S I++ +
Sbjct: 160 LHLFDKIASFSQ---GIASHNLGVIKFKEKDFNGALDLFDSS-IASKENASVSAIDALV- 214
Query: 949 GGAVYNLQANSLIFNNTQAVFNVLYSRGTSNFNATTQLLGNTNFTLSSQSLLNFNGDTTL 1008
Y+LQ L ++ + V + LY +F + L + ++L +
Sbjct: 215 --TAYHLQDADLYYHYLKIVRDTLYKDYKKSFYSYAYALKSYYAGEYFEAL-----SPLM 267
Query: 1009 QNNANITLGNKSQAAFKNSLTLDNNSNLSLDNQSVLNANNTSAFN-NQASLNIY 1061
N+N L ++ A K L + +N Q NA + A QA L Y
Sbjct: 268 HPNSNAFLKPNARLASKLFLMFKDETNAYKQLQKSANAQDELALGLLQARLGHY 321
>ref|NP_223739.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 511
Score = 34.7 bits (78), Expect = 0.032
Identities = 88/374 (23%), Positives = 146/374 (38%), Gaps = 55/374 (14%)
Query: 944 NSRLNGGAVYNLQANSLIFNNTQAVFNVLYSRGTSNFNATTQLLGNTNFTLSSQSLLNFN 1003
N R + L+ NSL F + L +G +F+ TQ + N ++ + ++L +F
Sbjct: 43 NERYLSVKTFKLRFNSLDFKAQANDDSTLILKG--DFSLLTQSV-NLDYHIDIKNLRSFK 99
Query: 1004 GDTTLQ-NNANITLGN-----------------KSQAAFKNSLTLDNNSNLSLDNQSVLN 1045
A +T GN +S A+ L S+LSL+ +
Sbjct: 100 DLIPYPLRGAIVTSGNIKGHRKALVVQGVSNVAQSHTAYNALLDDFKLSHLSLNAKDANL 159
Query: 1046 ANNTSAFNNQASLNIYNGSQATFNSLFFNGGTLSLNASSKLNASNASFSNNTTINLDDS- 1104
+ N A N QA FNSL G L L A++ L +NA + +NL D+
Sbjct: 160 EDLLYLINRPAYANAKVSLQADFNSLKPLEGHLILTANNAL-INNALINQIFHLNLKDTL 218
Query: 1105 VLSASNTSSLNAN------------INFQGASQADFGGNTIIDTASFNFD---SASSLNF 1149
V + S++S N +NF A ++++ + A + + A N
Sbjct: 219 VFNLSHSSDFKGNKAISDTTLTSPLVNFT-ALKSEYSFPALKLNAPYTLEIPHLAKLQNI 277
Query: 1150 NNLTANGALNFNGYTPSLTKALMSVSGQF-VLGNNGDINLSDINI---FDNITKSVTYNI 1205
N G+L G K L+ VSG +L D L + ++ F NI+ S ++
Sbjct: 278 TNHPLKGSLTLKGDIEQSPK-LLKVSGHSNLLDGALDFTLLNKDLKARFSNISTSKALDL 336
Query: 1206 LNAQKGITGISGAN-GYEKILFYGMKIQNATYSDNNNIQTWSFINPLNSSQIIQESIKNG 1264
+ K I+ AN Y+ I G+ N++ F+ N+ SI
Sbjct: 337 FHYPKFFQSIADANLDYDLISKQGVL--------KANLKNARFLK--NAFSDFLYSISRF 386
Query: 1265 DLTIEVLNNPNSAS 1278
D+T E+ ++ N S
Sbjct: 387 DITKEIYHDANLVS 400
Score = 29.6 bits (65), Expect = 1.0
Identities = 32/108 (29%), Positives = 44/108 (40%), Gaps = 14/108 (12%)
Query: 1918 LNLNENAALQANNLTITN--AFNNAS-------NSTANINGNFTLNQQATLSTNASGLNV 1968
L+LN A + L + N A+ NA NS + G+ L L NA +N
Sbjct: 150 LSLNAKDANLEDLLYLINRPAYANAKVSLQADFNSLKPLEGHLILTANNALINNAL-INQ 208
Query: 1969 MGNFNSYGDLVFNLSHSVSHAIINAQGSATIMANNNNPLIQFNTSSKE 2016
+ + N LVFNLSHS A T+ +PL+ F E
Sbjct: 209 IFHLNLKDTLVFNLSHSSDFKGNKAISDTTL----TSPLVNFTALKSE 252
>ref|NP_223655.1| putative [Helicobacter pylori J99]
Length = 416
Score = 33.9 bits (76), Expect = 0.054
Identities = 53/250 (21%), Positives = 89/250 (35%), Gaps = 35/250 (14%)
Query: 497 QQIAQDEQALQGDLDKLKQLANSPTGF-SEQAFNQAQKQEQQDEQTLQNEEKTFNSEQEG 555
++I QA L K+ + N+ S A A + Q E +N E
Sbjct: 49 EEIISKAQAQVNQLQKVNNMINTTNSLISSSAITLANPMQVLQNAQYQIESIRYN--YEN 106
Query: 556 LKQAIQQAQAQQQKQQQKQEQQQAQQTYQEDLTHSQSALNDVASDNTIASNDTNYTNNQN 615
LKQ+I+ AQ + + +QQ +N + ++ + D N +N
Sbjct: 107 LKQSIENWNAQNLLRNKYLQQQCPWLN-----------VNALTNNKIVNLKDLNNLITKN 155
Query: 616 TAIKEDAQGLENTNQQIA----QDEQALQGDL------DKLKQLANSPTGFSEQA-FNQA 664
+ A+ ++N Q I+ + Q+L G+L + L ++ N SEQA
Sbjct: 156 GEQTQTARDVQNLIQSISGSGYGNMQSLAGELSGRAWGEMLCKMVNDSNYESEQALLATG 215
Query: 665 QKQEQQDEQTLQNEEKTFNSEQE----------RLKQAIANAKPTSPTPSHAPTPTKHTA 714
E+Q + L +K N ++ RL T PT +H +
Sbjct: 216 NNPEEQKRRFLLRVKKKVNDNKQLKDKLDPFLKRLDVLQTEFGVTDPTANHNKQGIHYCT 275
Query: 715 PNTPPNKVPP 724
N K P
Sbjct: 276 ENKETGKCDP 285
>ref|NP_223108.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 455
Score = 33.9 bits (76), Expect = 0.054
Identities = 38/174 (21%), Positives = 74/174 (41%), Gaps = 25/174 (14%)
Query: 526 QAFNQAQKQEQQDEQTLQNEE---KTFNSEQEGLKQAIQQAQAQQQKQQQK-QEQQQAQQ 581
+A AQ D + +E KT S GL + + + ++ K+ E ++
Sbjct: 13 EALKIAQSHHGVDTLVFKTQEIRKKTLTSS--GLYEIVVAVEEEENKKAPLIPESLYDEE 70
Query: 582 TYQEDLTHS-QSALNDVASDNTIASNDTNYTNNQNTAIKEDAQGLENTNQQIAQDEQALQ 640
+ED+ S + ++ ++SN NYT ++N + E LE+T + + + LQ
Sbjct: 71 LNEEDVVMQLSSTVEEMRKLAGVSSNQRNYTFSKNKTLLEKDAPLEDTPLEANKQDALLQ 130
Query: 641 GDLDKLKQLANSPTGFSEQAFNQAQKQEQQDEQTLQNEE-KTFNSEQERLKQAI 693
LK AN K+E++ + Q EE K N++ +++ ++
Sbjct: 131 A----LKDEAN-------------HKKEREKREVKQEEEIKDINAQLSKIRDSL 167
Score = 28.1 bits (61), Expect = 3.0
Identities = 31/141 (21%), Positives = 62/141 (42%), Gaps = 23/141 (16%)
Query: 425 QETFNKQSIITQFLGDDLQQQAQKTYQQDLSNSQSALNNAASDNKIANSDTDYTKNKNAT 484
+E K +I + L D+ + Q LS++ + A ++++ +YT +KN T
Sbjct: 53 EEENKKAPLIPESLYDEELNEEDVVMQ--LSSTVEEMRKLAG---VSSNQRNYTFSKNKT 107
Query: 485 IKKDAQGLENTNQQIAQDEQALQGDLDKLKQLANSPTGFSEQAFNQAQKQEQQDEQTLQN 544
+ + LE+T + + + LQ LK AN K+E++ + Q
Sbjct: 108 LLEKDAPLEDTPLEANKQDALLQA----LKDEAN-------------HKKEREKREVKQE 150
Query: 545 EE-KTFNSEQEGLKQAIQQAQ 564
EE K N++ ++ +++ Q
Sbjct: 151 EEIKDINAQLSKIRDSLKLIQ 171
>ref|NP_222743.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 690
Score = 33.9 bits (76), Expect = 0.054
Identities = 75/350 (21%), Positives = 125/350 (35%), Gaps = 58/350 (16%)
Query: 601 NTIASNDTNYTNNQNTAIKEDAQGLENTNQQIAQDEQALQGDLDKLKQLANSPTGFS--- 657
+ +++ D + + I E AQ ++NT + +Q D ++L N T +S
Sbjct: 16 SALSAEDNGFFVSAGYQIGESAQMVKNT--------KGIQDLSDSYERLNNLLTNYSVLN 67
Query: 658 --------EQAFNQAQKQEQQDEQTLQNEEKTFNSEQ-------------ERLKQAIANA 696
A N A+ + L N++K + Q + + AI+
Sbjct: 68 ALIRQSADPNAINNARGNLNASAKNLINDKKNSPAYQAVLLALNAAAGLWQVMSYAISPC 127
Query: 697 KPTSPTPSHAPTPTKHTAPNTPPNKVPPTPPT-----QNPPAESVWSGVYWLQNKTYSNK 751
P T + T H NTP N+ T T P S+ S +N NK
Sbjct: 128 GPGKDTSKNGGVQTFH---NTPSNQWGGTTITCGTTGYEPGPYSILS----TENYAKINK 180
Query: 752 GIYYIDPNLSGQSGQSGNTLSTYTANLFGRSFSVNIQNGTLIIGNNTESVNSNGLIWIGH 811
Y I G SG+ LS L F++N NG NN E + + +
Sbjct: 181 A-YQIIQKAFGSSGKDIPALSDTNTEL---KFTINKNNGNTNTNNNGEEIVTKNNAQVLL 236
Query: 812 GGFGYITGTFSAANIYLTNNFKTGEGVSNSDGGGANITFKASDNITMDGLNYNDAETVTK 871
I T ++A ++ N G G ++S I K + G+ N+ +
Sbjct: 237 EQASTIITTLNSACPWINNG---GAGGASSGSLWEGIYLKGDGSAC--GIFKNEISAIQD 291
Query: 872 MIQTGASQHSYATFDALNNISVTNSSFSDMTWGKFSFSAKNISFSNASFS 921
MI+ A + A N + N + GK K+ +F+ + F+
Sbjct: 292 MIKNAAIAVEQSKIVAANAQNQRN-----LDTGKTFNPYKDANFAQSMFA 336
>ref|NP_223800.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 697
Score = 33.5 bits (75), Expect = 0.071
Identities = 66/313 (21%), Positives = 109/313 (34%), Gaps = 71/313 (22%)
Query: 405 EVGNN----TYDVTFDINGQDETLQETFNKQSIITQFLGDDL------------------ 442
+ GNN + TFD +Q N + +TQ +G+ L
Sbjct: 118 DTGNNPPRGNVNATFD-------MQSLVNNLNKLTQLIGETLIRNPENLPNSKVFNVKFG 170
Query: 443 QQQAQKTYQQDLSNSQSALNNAASDNKIANSDTDYTKNKNATIKKDAQGLENTNQQIAQD 502
Q + L+N+ ALNN I N+ T N+ T K + +N +
Sbjct: 171 NQSTVIALPEGLANTMDALNN-----DITNALTTLWYNQTLTNKSFSTP---SNTSVNFS 222
Query: 503 EQALQGDLDKLKQLANSPTGFSEQAFNQAQKQEQQDEQTLQNEEKTFNSEQEGLKQAIQQ 562
Q LQ L AN N Q++ T NE K+ + + QA+ Q
Sbjct: 223 PQVLQHLLQDGLATAN----------NNQTICSTQNQCTATNEAKSIAQNAQNIFQALMQ 272
Query: 563 AQAQQQKQQQKQ------------EQQQAQQT------YQEDLTHSQSALNDVASDNTIA 604
A +KQ + QQ Q+ Y ++ +Q+ L + + TI
Sbjct: 273 AGILGGLANEKQFGFTYNKAPNGSDSQQGYQSFSGPGYYTKNDNTTQAPLKALPAGATIG 332
Query: 605 SNDTNYTNNQNTAIKEDAQGLENTNQQIAQDEQALQGDLDKLKQLANSPTGFSEQAFNQA 664
S + YT + ++A+ A + + +Q +K +L + ++NQ
Sbjct: 333 SGNGQYTYHPSSAVYYLADSIIANGITASMIFSGMQNFANKAAKLIGT------SSYNQM 386
Query: 665 QKQEQQDEQTLQN 677
Q E L N
Sbjct: 387 QDAINYGESLLSN 399
>ref|NP_223773.1| putative [Helicobacter pylori J99]
Length = 263
Score = 33.5 bits (75), Expect = 0.071
Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 20/123 (16%)
Query: 486 KKDAQGL---------ENTNQQIAQDEQALQGD-LDKLKQLANSPTGFSEQAFNQAQK-Q 534
KKD Q + E N++I + + QGD L+ ++ P E F+ Q
Sbjct: 43 KKDEQAIDLNLEDLPSEKKNEKIEKVTEK-QGDFLEPKEEPKEEPEESLEDIFSSLNDFQ 101
Query: 535 EQQDEQTLQNEEKTFNSEQEGLKQAIQQAQAQQQKQQQKQEQQQAQQTYQEDLTHSQSAL 594
E+ D+ ++E+K EQ L+ +QQ+ +Q QE Q+ + Q++L L
Sbjct: 102 EKTDKNAQKDEQKNEQEEQRRLR--------EQQRLKQNQENQEMLKGLQQNLNQFTQKL 153
Query: 595 NDV 597
V
Sbjct: 154 ESV 156
Score = 29.3 bits (64), Expect = 1.3
Identities = 18/48 (37%), Positives = 26/48 (53%), Gaps = 4/48 (8%)
Query: 644 DKLKQLANSPTGFSEQAFNQAQKQEQQDEQTLQNEEKTFNSEQERLKQ 691
+ L+ + +S F E+ AQK DEQ + EE+ EQ+RLKQ
Sbjct: 88 ESLEDIFSSLNDFQEKTDKNAQK----DEQKNEQEEQRRLREQQRLKQ 131
>ref|NP_223380.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 651
Score = 33.5 bits (75), Expect = 0.071
Identities = 45/183 (24%), Positives = 70/183 (37%), Gaps = 11/183 (6%)
Query: 911 KNISFSNASFSGFTNPGGSSVISANATNSLSFINSRLN-----GGAVYNLQANSLIFNNT 965
KN++ S + N S S N++ +NS LN YN S IFN
Sbjct: 47 KNLNEKYEQLSQYLNQVASLKQSIQNANNIELVNSSLNYLKSFTNNNYNSTTQSPIFNAV 106
Query: 966 QAVFNVL---YSRGTSNFNATTQLLGNTNFTLSSQSLLNFNGDTTLQNNANITLGNKSQA 1022
QAV + +S N+ + +T S Q F+ T +QN + I +Q
Sbjct: 107 QAVITSVLGFWSLYAGNYLTFFVVNKDTQKPASVQGNPPFS--TIVQNCSGIENCAMNQT 164
Query: 1023 AFKNSLTLDNNSNLSLDNQSVLNANNTSAFNNQASLNIYNGSQATFNSLFFNGGTLSLNA 1082
+ L + + N + ANN A + A+ N S N+L + L A
Sbjct: 165 TYDKMKKLAEDLQAAQQN-ATTKANNLCALSGCATTQGQNPSSTVSNALNLAQQLMDLIA 223
Query: 1083 SSK 1085
++K
Sbjct: 224 NTK 226
Score = 27.3 bits (59), Expect = 5.1
Identities = 25/90 (27%), Positives = 40/90 (43%), Gaps = 6/90 (6%)
Query: 914 SFSNASFSGFTNPGGSSVISANATNSLSFINSRLNGGAVYNLQANSLIFNNTQ----AVF 969
SF N+S +T GGS ++ +S++ N++L+ G +Q + N+Q F
Sbjct: 514 SFFNSSSDIWTYGGGSDLLVNFINDSITRKNNKLSVGLFGGIQLAGTTWLNSQYMNLTAF 573
Query: 970 NVLYSR--GTSNFNATTQLLGNTNFTLSSQ 997
N YS SNF L TN + +
Sbjct: 574 NNPYSAKVNASNFQFLFNLGLRTNLATAKK 603
>ref|NP_223706.1| histidine kinase [Helicobacter pylori J99]
Length = 815
Score = 33.1 bits (74), Expect = 0.093
Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 13/108 (12%)
Query: 541 TLQNEEKTFNSEQEGLKQAIQQAQAQQQKQQQKQEQQQAQQTYQEDLTHSQSALNDVASD 600
T QN E E G K+A ++ ++ K++ K+E + + E+LT SD
Sbjct: 130 TSQNLEGA--KETSGTKEAPEKEVKKENKEKAKEEVKANKTPTTENLT----------SD 177
Query: 601 NTIASN-DTNYTNNQNTAIKEDAQGLENTNQQIAQDEQALQGDLDKLK 647
N +A D +Y N ++ + + L N Q+ ++ +A + D+ K
Sbjct: 178 NPLADEPDLDYANMSAEEVEAEIERLLNKRQEADKERRAQKKQEDQAK 225
Score = 27.7 bits (60), Expect = 3.9
Identities = 30/131 (22%), Positives = 55/131 (41%), Gaps = 7/131 (5%)
Query: 594 LNDVASDNTIASNDTNYTNNQ-NTAIKEDAQGLENTNQQIAQDEQALQGDLDKLKQLANS 652
L + S N + +T+ T +K++ + E +++ ++ +L LA+
Sbjct: 126 LQAITSQNLEGAKETSGTKEAPEKEVKKENK--EKAKEEVKANKTPTTENLTSDNPLADE 183
Query: 653 PTGFSEQAFNQAQKQEQQDEQTLQNEEKTFNSEQERLKQAIANAKPTSPTPSHAPTPTKH 712
P + A A++ E + E+ L N+ + + E+ K+ AKP TP
Sbjct: 184 PD--LDYANMSAEEVEAEIERLL-NKRQEADKERRAQKKQEDQAKPKQEVAPAKETPKTE 240
Query: 713 TAPNTPPNKVP 723
T P T KVP
Sbjct: 241 T-PKTETRKVP 250
>ref|NP_223610.1| putative [Helicobacter pylori J99]
Length = 267
Score = 33.1 bits (74), Expect = 0.093
Identities = 28/127 (22%), Positives = 61/127 (47%), Gaps = 5/127 (3%)
Query: 460 ALNNAASDNKIANSDTDYTKNKNATIKKDAQGLENTNQQIAQDEQALQGDLDKLKQLANS 519
ALN+ + NK + + + K+ Q L++TN +IA ++ + ++ ++L +
Sbjct: 35 ALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMS-EIKSERELRS- 92
Query: 520 PTGFSEQAFNQAQKQEQQDEQTLQNEEKTFNSEQEGLKQAIQQAQ--AQQQKQQQKQEQQ 577
E + Q ++ + LQNE K + +QE LK+ + + + A + + + E +
Sbjct: 93 -LNIEEDIAKERSNQANREIENLQNEIKHKSEKQEVLKKEMLELEKLALELENLVENEVK 151
Query: 578 QAQQTYQ 584
++T Q
Sbjct: 152 NIKETQQ 158
Score = 30.8 bits (68), Expect = 0.46
Identities = 24/99 (24%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
Query: 593 ALNDVASDNTIASNDTNYTNNQNTAIKEDAQGLENTNQQIAQDEQALQGDLDKLKQLANS 652
ALND + N N + ++ Q L++TN +IA ++ + ++ ++L +
Sbjct: 35 ALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMS-EIKSERELRS- 92
Query: 653 PTGFSEQAFNQAQKQEQQDEQTLQNEEKTFNSEQERLKQ 691
E + Q ++ + LQNE K + +QE LK+
Sbjct: 93 -LNIEEDIAKERSNQANREIENLQNEIKHKSEKQEVLKK 130
>ref|NP_222962.1| putative [Helicobacter pylori J99]
Length = 222
Score = 33.1 bits (74), Expect = 0.093
Identities = 42/203 (20%), Positives = 76/203 (36%), Gaps = 15/203 (7%)
Query: 536 QQDEQTLQNEEKTFNSEQEGLKQAIQQAQAQQQKQQQKQEQQQAQQTYQEDLTHSQSALN 595
++ Q L F S++ LK+ ++Q ++Q + Q + + DL + +
Sbjct: 17 EEAAQELLQCSAIFESKKAELKEDLRQLSEKEQSLRILQTENARLLDEKSDLLNKKEKEI 76
Query: 596 DVASDNTIASNDTNYT--NNQNTAIKEDAQGLENTNQQIAQDEQALQGDL-DKLKQ---- 648
D N A + T + +K + E ++I Q + + G+ K+K
Sbjct: 77 DEKLKNLAAKEEAFKTLQTEEKKRLKNLIEENEGILREIKQAKDSKIGETYSKMKDSKSA 136
Query: 649 --LANSPTGFSEQAFNQAQKQE------QQDEQTLQNEEKTFNSEQERLKQAIANAKPTS 700
L N PT + + + QE + D + + + + K+ + K T
Sbjct: 137 LILENLPTQNALEILMALKPQELGKILAKMDPKKAAALTELWQKPPKENKENKESQKTTD 196
Query: 701 PTPSHAPTPTKHTAPNTPPNKVP 723
PTP PTP K P K P
Sbjct: 197 PTPPTPPTPPKEPTLKDPNVKEP 219
>ref|NP_222822.1| 70kDa chaperone [Helicobacter pylori J99]
Length = 620
Score = 33.1 bits (74), Expect = 0.093
Identities = 41/193 (21%), Positives = 86/193 (44%), Gaps = 24/193 (12%)
Query: 497 QQIAQDEQALQGDLDKLKQLANSPTGFS--EQAF----NQAQKQEQQDEQTLQNEEKTFN 550
+++A+D ++L G D L+ +A +P G E F N QD+ T +++E +
Sbjct: 439 RELARDNKSL-GKFD-LQGIAPAPRGMPQIEVTFDIDANGILTVSAQDKNTGKSQEIKIS 496
Query: 551 SEQ----EGLKQAIQQAQAQQQKQQQKQEQQQAQQTYQEDLTHSQSALNDVASDNTIASN 606
+++ ++ A+ +++ +K+E +A+ + + L H D N + N
Sbjct: 497 GSSGLSDSEIEKMVKDAELHKEEDARKKEVIEARN-HADSLAHQTQKSLDEHKTN-LNEN 554
Query: 607 DTNYTNNQNTAIKEDAQGLENTNQQIAQDEQALQGDLDKL-KQLANSPTGFSEQAFNQAQ 665
D N N A+K+ + T ++ +AL KL + +AN N A+
Sbjct: 555 DANEIQNAINALKDCIKNDNATKAELEDKTKALTQAAQKLGEAMANK---------NNAE 605
Query: 666 KQEQQDEQTLQNE 678
+ +++D+ + E
Sbjct: 606 QPKKKDDDVIDAE 618
>ref|NP_223642.1| putative [Helicobacter pylori J99]
Length = 195
Score = 32.3 bits (72), Expect = 0.16
Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 20/130 (15%)
Query: 476 DYTKNKNATIKKDAQGLENTNQQI-AQDEQALQGDLDKLKQLANSPTGFSEQAFNQAQKQ 534
D +K+ KD ++ N+ I AQD + ++ + +L L+ F EQ + +
Sbjct: 27 DKSKDMMKAFMKDLAFAKDKNEVIKAQDNELVKEFMQELSSLS-----FKEQL--EFYQT 79
Query: 535 EQQDEQTLQNEEKT------FNSEQEGL-KQAIQQAQAQQ-----QKQQQKQEQQQAQQT 582
+ + +L N+E + F S E L KQ I + Q+ Q + +E + ++
Sbjct: 80 NRDYDPSLDNDENSSELLDAFTSSLENLEKQKINPIREQKRESGWQNNEDNKENSELEKA 139
Query: 583 YQEDLTHSQS 592
+++DL+ SQS
Sbjct: 140 FKKDLSFSQS 149
>ref|NP_223889.1| putative [Helicobacter pylori J99]
Length = 219
Score = 32.0 bits (71), Expect = 0.21
Identities = 27/134 (20%), Positives = 57/134 (42%), Gaps = 12/134 (8%)
Query: 485 IKKDAQGLENTNQQIAQDEQALQGDLDKLKQLANSPTGFSEQAFNQ---------AQKQE 535
+KKD+ + + + + E Q K+ AN+ T +EQ + QKQE
Sbjct: 37 VKKDSAPM---SPNVEKSETERQNSTFSPKEEANATTTATEQNPTKDTVPPLDTATQKQE 93
Query: 536 QQDEQTLQNEEKTFNSEQEGLKQAIQQAQAQQQKQQQKQEQQQAQQTYQEDLTHSQSALN 595
+ E + +++ ++ +KQ I+Q Q+Q+++ K +Q + T + +
Sbjct: 94 IKQEIKQEIKQEIKQEIKQEIKQEIKQETKQEQEKENKPKQNSVSPVQNDQKTPTTPLMG 153
Query: 596 DVASDNTIASNDTN 609
+ +A + N
Sbjct: 154 KKPLEYKVAVSGVN 167
>ref|NP_223158.1| putative [Helicobacter pylori J99]
Length = 912
Score = 31.6 bits (70), Expect = 0.27
Identities = 38/190 (20%), Positives = 69/190 (36%), Gaps = 29/190 (15%)
Query: 356 SDAIFNLNQTLNNQTYDILTTNGAIQYGVYQSYLWDLINYKGDKAISHVEVGNNTYDVTF 415
+D + N+++ + N + +L + ++ G Y WD K + + GN +D
Sbjct: 108 NDELINMSEVIKNGSV-LLESFERLKNGFRYGYEWDNNGVKLRLVVDDLNDGNKVFDFYS 166
Query: 416 DINGQDETLQETFNKQSIITQFLGDDLQQQAQKTYQQDLSNSQSALNNAASDNKIANSDT 475
D N +D + Q + +D L+ K S
Sbjct: 167 DRNFKDFR-------------------DARPQPSASKDNGTQPITLDGNNPTQKPLTSQE 207
Query: 476 DYTKNKNATIKKDAQGLENTNQQIAQDEQALQGDLDKLKQLANSPTGFSEQAFNQAQKQE 535
D KN T Q++ Q + +KL +L S SEQ F +A++QE
Sbjct: 208 DLLKNTELN--------NETTQEVKNLSLLEQANAEKLAKL-ESEAKVSEQEFLKAKEQE 258
Query: 536 QQDEQTLQNE 545
+ + L+ +
Sbjct: 259 AKRKVALKKK 268
>ref|NP_223882.1| outer membrane protein - adhesin [Helicobacter pylori J99]
Length = 703
Score = 31.2 bits (69), Expect = 0.35
Identities = 64/334 (19%), Positives = 117/334 (34%), Gaps = 62/334 (18%)
Query: 977 TSNFNATTQLLGNTNFTLSSQSLLNFNGDTTLQNNANITLGNKSQAAFKNSLTLDNNSNL 1036
+ N+ LL N N + +L+ + D + N+A LG+ + +N L + NS
Sbjct: 47 SENYEKLNNLLNNYN---TLNTLVKLSSDPSAVNDARDNLGSST----RNLLDVKANSPA 99
Query: 1037 SLDNQSVLNANNTSAFNNQASLNIY-----------NGSQATFNSL------------FF 1073
Q+VL A N + Q + + NG TFN++ ++
Sbjct: 100 Y---QAVLLALNAAVGLWQVTSYAFTACGPGSNENANGGIQTFNNVPGQNTTTITCNSYY 156
Query: 1074 ---NGGTLSLNASSKLNASNASFSNNTTINLDDSVLSASNTSSLNANINFQGASQADFGG 1130
+GG +S + +N + T N + + ++ T+ L+ IN + +
Sbjct: 157 EPGHGGPISTKNYAIINKAYQIIQKALTANGEGIPVLSNTTTKLDFTINGDKRTGGEPNK 216
Query: 1131 NTIID-------TASFNFDSASSLNFNNLTANGALNFNGYTPSLTKALMSVSGQFVLGNN 1183
+ + S+N + N T N A + L S F G +
Sbjct: 217 KLVYPWSHGKAISTSWNATITAPTTENINTTNSAQELLKQASIIITTLNSACPNFQNGGS 276
Query: 1184 G-----DINLSDINIFDNITKSVTYNILNAQKGITGISGANGYEKILFYGMKIQNATYSD 1238
G N + +F N ++ I NAQ+ + KI + +
Sbjct: 277 GYWAGISGNGTMCGMFKNEISAIQGMIANAQEAVAQA--------------KIVSENTQN 322
Query: 1239 NNNIQTWSFINPLNSSQIIQESIKNGDLTIEVLN 1272
N++ NP + + +KN E+LN
Sbjct: 323 QNSLDAGKPFNPYTDASFAESMLKNAQAQAEILN 356
Score = 27.7 bits (60), Expect = 3.9
Identities = 43/196 (21%), Positives = 69/196 (34%), Gaps = 26/196 (13%)
Query: 787 IQNGTLIIGNNTESVNSNGLIWIGHGG------FGYITGTFSAANIYLTNNFKTGEGVSN 840
IQ + G NT ++ N GHGG + I + LT N GEG+
Sbjct: 136 IQTFNNVPGQNTTTITCNSYYEPGHGGPISTKNYAIINKAYQIIQKALTAN---GEGIPV 192
Query: 841 SDGGGANITFKASDNITMDGLNYNDAETVTKMI-------QTGASQHSYATFDALNNISV 893
+N T K + T++G E K++ S ++ T NI+
Sbjct: 193 L----SNTTTKL--DFTINGDKRTGGEPNKKLVYPWSHGKAISTSWNATITAPTTENINT 246
Query: 894 TNSSFSDMTWGKFSFSAKNI---SFSNASFSGFTNPGGSSVISANATNSLSFINSRLNGG 950
TNS+ + + N +F N + G+ + N +S I +
Sbjct: 247 TNSAQELLKQASIIITTLNSACPNFQNGGSGYWAGISGNGTMCGMFKNEISAIQGMIANA 306
Query: 951 AVYNLQANSLIFNNTQ 966
QA ++ NTQ
Sbjct: 307 QEAVAQA-KIVSENTQ 321
Score = 27.3 bits (59), Expect = 5.1
Identities = 17/44 (38%), Positives = 23/44 (51%), Gaps = 6/44 (13%)
Query: 2438 HYFNKNSYYFVIADV-----GRDLFINSMGDKMVRFIG-NNTLS 2475
H F K+S++ +DV G D N + DK F+G NN LS
Sbjct: 557 HAFIKSSFFNSASDVWTYGFGADALYNFINDKATNFLGKNNKLS 600
>ref|NP_223407.1| putative FLAGELLAR HOOK-ASSOCIATED PROTEIN 2 (HAP2) [Helicobacter
pylori J99]
Length = 685
Score = 31.2 bits (69), Expect = 0.35
Identities = 41/169 (24%), Positives = 72/169 (42%), Gaps = 15/169 (8%)
Query: 908 FSAKNISFSNASFSGFTNPGGSSVISANATNS-LSFINSRLNGGAVYNLQANSLIFNNTQ 966
F +KN+ AS S FT G S N N +S +N L N A + + Q
Sbjct: 425 FMSKNLQ--KASDSQFTYNGVSITRPTNEVNDVISGVNITLEQTTEPNKPAIISVSRDNQ 482
Query: 967 AVFNVLYSRGTSNFNATTQLLGNTNFTLSSQSLLNFNGDTTLQ------NNA---NITLG 1017
A+ + L + +L +T + ++ FNG ++ NN ++
Sbjct: 483 AIIDSLKEFVKAYNELIPKLDEDTRYDADTKIAGIFNGVGDIRAIRSSLNNVFSYSVHTD 542
Query: 1018 NKSQAAFKNSLTLDNNSNLSLDNQSVLNANNTSAFNNQASLNIYNGSQA 1066
N ++ K L+LD+ +SLD + +A N+ N +A+ + + GS +
Sbjct: 543 NGVESLMKYGLSLDDKGVMSLDEAKLSSALNS---NPKATQDFFYGSDS 588
>ref|NP_222796.1| putative [Helicobacter pylori J99]
Length = 590
Score = 31.2 bits (69), Expect = 0.35
Identities = 45/249 (18%), Positives = 86/249 (34%), Gaps = 19/249 (7%)
Query: 445 QAQKTYQQDLSNSQSA-LNNAASDNKIANSDTDYTKNKNATIKKDAQGLENTNQQIAQDE 503
+A T D SQ+ LN+ K D ++ + K + + + + Q
Sbjct: 308 KAMPTKSVDAITSQAKELNHLVGQIKEMKQDGASPNKIDSVVNKAMEVRDKLDNNLNQ-- 365
Query: 504 QALQGDLDKLKQLANSPTGFSEQAFNQAQKQEQQDEQT---LQNEEKTFNSEQEGLKQAI 560
L DL K L++ ++A + Q+ + L K +++ L AI
Sbjct: 366 --LDNDLKDQKGLSSEQQAQVDKALDSVQQLSHSSDVVGNYLDGSLKIDGDDRDDLNDAI 423
Query: 561 QQAQAQQQKQQQKQEQQQAQQTYQED-----LTHSQSALNDVASDNTIASNDTNYTNNQN 615
Q +Q +D L + +A ND +D+ + +N T+ +N +
Sbjct: 424 NNPMQQPAQQTPINNMDNTHANDSKDQGGNALINPNNATNDDHNDDHMDTNTTDTSNAND 483
Query: 616 TAIKE-DAQG-----LENTNQQIAQDEQALQGDLDKLKQLANSPTGFSEQAFNQAQKQEQ 669
T + DA G + NT+ G+ D + + N + +
Sbjct: 484 TPTDDKDASGNNTGDMNNTDTGNTDTGNTDTGNTDDMSNMNNGNDDTGNTNDDMGNSNDM 543
Query: 670 QDEQTLQNE 678
D+ N+
Sbjct: 544 GDDMNNAND 552
Score = 26.9 bits (58), Expect = 6.6
Identities = 31/132 (23%), Positives = 47/132 (35%), Gaps = 6/132 (4%)
Query: 1004 GDTTLQNNANITLGNKSQAAFKNSLTLDNNSNLSLDNQSVLNANNTSAFNNQASLNIYNG 1063
G L N N T + + + T +N+N + + + NNT NN + N G
Sbjct: 451 GGNALINPNNATNDDHNDDHMDTNTTDTSNANDTPTDDKDASGNNTGDMNNTDTGNTDTG 510
Query: 1064 SQATFN----SLFFNGGTLSLNASSKLNASN--ASFSNNTTINLDDSVLSASNTSSLNAN 1117
+ T N S NG + N + + SN NN DD S + +
Sbjct: 511 NTDTGNTDDMSNMNNGNDDTGNTNDDMGNSNDMGDDMNNANDMNDDMGNSNDDMGDMGDM 570
Query: 1118 INFQGASQADFG 1129
+ G D G
Sbjct: 571 NDDMGGDMGDMG 582
Score = 26.9 bits (58), Expect = 6.6
Identities = 30/130 (23%), Positives = 50/130 (38%), Gaps = 14/130 (10%)
Query: 1010 NNANITLGNKSQAAFKNSLTLDNNS--------NLSLDNQSVLNANNTSAFNNQASLNIY 1061
NN + T N S+ N+L NN+ ++ + NAN+T + AS N
Sbjct: 437 NNMDNTHANDSKDQGGNALINPNNATNDDHNDDHMDTNTTDTSNANDTPTDDKDASGNNT 496
Query: 1062 NGSQATFNSLFFNGGTLSLNASSKLNASNASFSNNTTINLDDSVLSASNTSSLNANINFQ 1121
T G T + N N +N N+ T N +D + N++ + ++N
Sbjct: 497 GDMNNTDTGNTDTGNTDTGNTDDMSNMNN---GNDDTGNTNDDM---GNSNDMGDDMNNA 550
Query: 1122 GASQADFGGN 1131
D G +
Sbjct: 551 NDMNDDMGNS 560
>ref|NP_222729.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 668
Score = 31.2 bits (69), Expect = 0.35
Identities = 39/179 (21%), Positives = 73/179 (39%), Gaps = 18/179 (10%)
Query: 1078 LSLNASSKLNASNASFSNNTTINLDDSVLSASNTSSL-NANINFQGASQADFGGNTIIDT 1136
LSL+ASS LNA + F + + ++ NT L + ++ S N ++
Sbjct: 7 LSLSASSLLNAEDNGFFISAGYQIGEAAQMVKNTGELKKLSDTYENLSNLLTNFNN-LNQ 65
Query: 1137 ASFNFDSASSLN--FNNLTAN--GALNFNGYTPSLTKALMSVSGQFVL------------ 1180
A N S S +N +NL AN G + +P+ ++++ L
Sbjct: 66 AVTNASSPSEINAAIDNLKANTQGLIGEKTNSPAYQAVYLALNAAVGLWNVIAYNVQCGP 125
Query: 1181 GNNGDINLSDINIFDNITKSVTYNILNAQKGITGISGANGYEKILFYGMKIQNATYSDN 1239
GN+G +++ + + S+ N+ G++G ++K+ IQ A D+
Sbjct: 126 GNSGQQSVTFEGQPGHNSSSINCNLTGYNNGVSGPLSIENFKKLNQAYQTIQQALKQDS 184
Score = 27.7 bits (60), Expect = 3.9
Identities = 32/129 (24%), Positives = 57/129 (43%), Gaps = 17/129 (13%)
Query: 1933 ITNAFNNASNSTANINGNFTLNQQATLSTNASGLNV-MGNFNS-----YGDLVFNLSHSV 1986
+++ + N SN N N LNQ T +++ S +N + N + G+ + ++
Sbjct: 46 LSDTYENLSNLLTNFNN---LNQAVTNASSPSEINAAIDNLKANTQGLIGEKTNSPAYQA 102
Query: 1987 SHAIINAQ-GSATIMANN-----NNPLIQFNTSSKEVGTYTLIDSAKAIYYGYNNQITGG 2040
+ +NA G ++A N N Q T + G + S GYNN ++G
Sbjct: 103 VYLALNAAVGLWNVIAYNVQCGPGNSGQQSVTFEGQPGHNS--SSINCNLTGYNNGVSGP 160
Query: 2041 SSLDNYLKL 2049
S++N+ KL
Sbjct: 161 LSIENFKKL 169
>ref|NP_222935.1| Outer membrane protein/porin [Helicobacter pylori J99]
Length = 483
Score = 30.8 bits (68), Expect = 0.46
Identities = 87/423 (20%), Positives = 153/423 (35%), Gaps = 50/423 (11%)
Query: 605 SNDTNYTNNQNTAIKEDAQGLENTNQQIAQDEQALQGDLDKLKQLANSPTGFSEQAFNQA 664
SN NN T E Q NT+ AQ L+ +LK N+ A + A
Sbjct: 46 SNAYENLNNLLTRYNELKQTASNTDSSTAQAIDNLEKSASRLKTTPNTANQAVSSALSSA 105
Query: 665 QKQEQQDEQTLQNEEKTFNSEQERLKQAIANAKPTSPTP-SHAPTPTKHTAPNTPPNKVP 723
Q L N + +SE E+LK + T ++ + T + +
Sbjct: 106 VGMWQVIASNLANNSLS-SSEYEKLKATSQLLQNTLENKNNNLKIENDYDQLLTQASTII 164
Query: 724 PTPPTQNPPAESVWSGVYWLQNKTYSNKGIYYIDPNLSGQSGQSGNTL--STYTANLFGR 781
T +Q P + +G W N + + I+ G + + N++ S A R
Sbjct: 165 NTLQSQCPGVDG-GNGKPWGINTSGNACAIF-------GSTFNAINSMIDSAKKAAADAR 216
Query: 782 SFSVNIQNGTLIIGNNTESVNSNGLIWIGHGGFGYITGTFSAANIYLTNNFKTGEGVSNS 841
+ N N + N N + + + Y+ G L + T + NS
Sbjct: 217 RTAPESPNQQNAFTNADFNKNLNQVSSVINDTISYLKGD------NLETIYNTIQKTPNS 270
Query: 842 DGGGANITFKASDNITMDGLNYNDAETVTK-----MIQTGASQHSYATFDALNNISV--- 893
G ++ ++S + +++ Y+ +T TK ++ +S + A+N + V
Sbjct: 271 K-GFQSLVSRSSYSYSLNETQYSQFQTTTKEFGHNPFRSVGLINSQSNNGAMNGVGVQLG 329
Query: 894 ------TNSSFSDMTWGKFSFSAKNI--SFSNASFSGFTNPGGSSVISANATNSLSFINS 945
N F +G F ++ I +F N++ + FT GS ++ L+FI
Sbjct: 330 YKQFFGKNKFFGIRYYGFFDYNYAYIKSNFFNSASNVFTYGAGSDLL-------LNFI-- 380
Query: 946 RLNGGAVYNLQANSLIFNNTQAVFNVLYSRGTSNFNATTQL----LGNTNFTLSSQSLLN 1001
NGG+ N + + IF + ++N T + NTNF + L
Sbjct: 381 --NGGSDRNRKVSFGIFGGIALAGTTWLNNQSANLKITNSAYSAKINNTNFQFLFNTGLR 438
Query: 1002 FNG 1004
G
Sbjct: 439 LQG 441
>ref|NP_222886.1| putative [Helicobacter pylori J99]
Length = 406
Score = 30.8 bits (68), Expect = 0.46
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Query: 1775 FLSNGYVFVNNSSFSNATGGSLNF----VANKSII--FNGDNTIDFSKYQ 1818
FLS+GY N S + N G +NF N+ II FN N+ ++++Q
Sbjct: 91 FLSHGYYSENKSYYENNAKGRINFSKTIKKNRPIIQTFNNKNSFVYTRFQ 140
>ref|NP_223377.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 638
Score = 30.4 bits (67), Expect = 0.60
Identities = 56/258 (21%), Positives = 98/258 (37%), Gaps = 29/258 (11%)
Query: 1770 KGYFNFLSNGYVFVNNSSFSNATGGSLNFVANKSIIFNGDNTIDFSKYQGALIFASNDVS 1829
K +L N Y+ V + + N NK I DN ++ + + + DV
Sbjct: 320 KDQLKYLENAYLKVPHLGKTPTNPYRQNVNLNKEINAVQDNVANYGNRLDSALSVAKDVY 379
Query: 1830 NINITTLNATNGLSLNAGLNNVSVQKGEICVNLANCP----TTKNSSSTNSSVTP----- 1880
N+ N T ++ N+S + ++ N N + K+S++ + P
Sbjct: 380 NLK---SNQTEIVTTYNDAKNLSEEISKLPYNQVNVTNIVMSPKDSTAGQYQINPEQQSN 436
Query: 1881 TNESLSVRANN-FTFLGAIAS---NGAIDLSQVKNN-----SVIDTLNLNENAALQANNL 1931
N++L+ +NN F +G I+S NGA++ V+ L N+
Sbjct: 437 LNQALAAMSNNPFKKVGMISSQNNNGALNGLGVQVGYKQFFGESKRWGLRYYGFFDYNHG 496
Query: 1932 TITNAFNNASNSTANING------NFTLNQQATLSTNASGLNVMGNFNSYGDLVFNLSHS 1985
I ++F N+S+ G NF +N T N + + G G N S
Sbjct: 497 YIKSSFFNSSSDIWTYGGGSDLLVNF-INDSITRKNNKLSVGLFGGIQLAGTTWLN-SQY 554
Query: 1986 VSHAIINAQGSATIMANN 2003
++ N SA + A+N
Sbjct: 555 MNLTAFNNPYSAKVNASN 572
Score = 27.3 bits (59), Expect = 5.1
Identities = 25/90 (27%), Positives = 40/90 (43%), Gaps = 6/90 (6%)
Query: 914 SFSNASFSGFTNPGGSSVISANATNSLSFINSRLNGGAVYNLQANSLIFNNTQ----AVF 969
SF N+S +T GGS ++ +S++ N++L+ G +Q + N+Q F
Sbjct: 501 SFFNSSSDIWTYGGGSDLLVNFINDSITRKNNKLSVGLFGGIQLAGTTWLNSQYMNLTAF 560
Query: 970 NVLYSR--GTSNFNATTQLLGNTNFTLSSQ 997
N YS SNF L TN + +
Sbjct: 561 NNPYSAKVNASNFQFLFNLGLRTNLATAKK 590
>ref|NP_222739.1| putative chemotaxis protein [Helicobacter pylori J99]
Length = 321
Score = 30.4 bits (67), Expect = 0.60
Identities = 27/101 (26%), Positives = 52/101 (50%), Gaps = 17/101 (16%)
Query: 1645 QSLKSMLDDKGL--LNFIGGYMNASELSSILSVVLKDITNPPTSLQKDIGVVANDL-LNE 1701
++++ +LD G+ ++FI G +L+ + NP T + +IG++ DL + E
Sbjct: 210 KTMQMILDKLGVKHIDFING-----------KTLLEHLFNPTTDV-SNIGLIITDLEMPE 257
Query: 1702 FLGQDVIKKLESQGLVSNIINNIISQGGLSGVYNQGLGSVL 1742
G +VIK++++ L S I I+ +SG N+ + L
Sbjct: 258 ASGFEVIKQVKNNPLTSKI--PIVVNSSMSGSSNEDMARSL 296
>ref|NP_224064.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 744
Score = 30.0 bits (66), Expect = 0.79
Identities = 61/258 (23%), Positives = 90/258 (34%), Gaps = 39/258 (15%)
Query: 966 QAVFNVLYSRGTSNFNATTQLLGNTNFTLSSQSLLNFNGDTTLQNNANITLGNKSQAAFK 1025
Q+ + Y ++ T+L N T N QN +T N+ A
Sbjct: 71 QSTYGKYYISQSTILKNATELFAEDNIT---------NLTFYSQNPVYVTAYNQESA--- 118
Query: 1026 NSLTLDNNSNLSLDNQSVLNANN-----TSAFNNQASLNIYNG----SQATFNSLFFNGG 1076
NNS + + N N NN T N SL + SQ + FN
Sbjct: 119 EEAGYGNNSLIMIQNFLPYNLNNIELSYTDDQGNVVSLGVIETIPKQSQIILPASLFNDP 178
Query: 1077 TLSLNASSKLNASNASFSNNTTINLDDSVLSASNTSSLNANINFQGASQADFGGNTIIDT 1136
L+ + +L + FS+ +T NL + LS T+ IN+ S + G+
Sbjct: 179 QLNADGFQQLQTNTTRFSDASTQNLFNK-LSKVTTNLQMTYINYNQFSSGNGSGSKPPCP 237
Query: 1137 ASFN----------FDSASSLNFNNLTANGALNFNGYTPSLTKALMSVSGQFVLGNNGDI 1186
N F S + N NL N F+ + S A+++ QF D
Sbjct: 238 PYENQANCVAKVPPFTSQDAKNLTNLMLNMMAVFD--SKSWEDAVLNAPFQF-----SDN 290
Query: 1187 NLSDINIFDNITKSVTYN 1204
NLS D +T YN
Sbjct: 291 NLSAPCYSDYLTCVNPYN 308
>ref|NP_223697.1| 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYL TRANSFERASE [Helicobacter pylori
J99]
Length = 429
Score = 30.0 bits (66), Expect = 0.79
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 1016 LGNKSQAAFKNSLTLDNNSNLSLDNQSVLNANNTSAFNNQASLNIYNGSQATFNSLFFNG 1075
LG K + KNS + + + N+ +LN NN+ S+ +Y+G + LF
Sbjct: 49 LGAKVENTAKNSFKITPPTTIKEPNK-ILNCNNSGT-----SMRLYSGLLSAQKGLFVLS 102
Query: 1076 GTLSLNA 1082
G SLNA
Sbjct: 103 GDNSLNA 109
>ref|NP_223560.1| putative [Helicobacter pylori J99]
Length = 524
Score = 30.0 bits (66), Expect = 0.79
Identities = 57/280 (20%), Positives = 95/280 (33%), Gaps = 46/280 (16%)
Query: 446 AQKTYQQDLSNSQSALNNAASDNKIANSDTDYTKNKNATIKKDAQGL------------- 492
A +Q +L N N A+ N I N T K+ KD Q L
Sbjct: 145 ASNAHQTNLPNKNPITPNHAN-NAIKNPTTPTHNVKDPKTLKDIQTLSQKHDLNASNIQA 203
Query: 493 ----ENTNQQIAQDEQALQGDLDKL-----KQLANSPTGFSE--QAFNQAQKQEQQDEQT 541
EN N A D AL+ + K A + S Q+ + + Q ++
Sbjct: 204 ATTPENKNPLNASDHLALKTTQASINHTLTKNDAKNTANLSSVLQSLEKKEPQNKEHANP 263
Query: 542 LQNEEKTFNSEQEGLKQAIQQAQAQQQKQQQKQEQQQAQQTYQEDLTHSQSA---LNDVA 598
NE+KT ++ AI++ + +K+ +K QT T + L +
Sbjct: 264 PNNEKKTPPLKEALQMNAIKRDKTLSKKKPEKTPIHAKTQTIAPSATPENAPKIPLKTLP 323
Query: 599 SDNTIASNDTNYTNNQNTAIKEDAQGLENTNQQIAQDEQALQGDLDKLKQLANSPTGFSE 658
I +N N KE+ + N++ A++ T S
Sbjct: 324 LMPLIGANPPPNDNAPTPLEKEEKTKEISDNKEKAKE------------------TNSSA 365
Query: 659 QAFNQAQKQEQQDEQTLQNEEKTFNSEQERLKQAIANAKP 698
Q+ Q ++ + ++T ++LKQ I KP
Sbjct: 366 QSVQNTQASDKTSDNKSTTPKETIRHFTQQLKQEIQEYKP 405
Score = 26.9 bits (58), Expect = 6.6
Identities = 33/152 (21%), Positives = 53/152 (34%), Gaps = 24/152 (15%)
Query: 601 NTIASNDTNYTNNQNTAIKEDAQGLENTNQQIAQDEQALQGD-------------LDKLK 647
N+ A N+ N + +D + NQ+I++D+ A + + K
Sbjct: 16 NSGAKNEVKDAKNAPKSASKDFSKI--LNQKISKDKTAPKESPNHSALKATPKDAKEDAK 73
Query: 648 QLANSPTGFSEQAFNQAQKQEQQDEQTLQNEEKTFNSEQERLKQAIANAKPTSPTPSHAP 707
L +PT + A N A+ Q+ + N KT + + A T+P +
Sbjct: 74 ALEKTPTLPHQHAQNLAKDQQAPTLKDWLNHPKTHPTAPHEAQHETHEANETNPKTPNET 133
Query: 708 TPTKHTAPN---------TPPNKVPPTPPTQN 730
PN PNK P TP N
Sbjct: 134 LSKNEKKPNEVASNAHQTNLPNKNPITPNHAN 165
>ref|NP_223551.1| outer membrane protein - adhesin [Helicobacter pylori J99]
Length = 744
Score = 30.0 bits (66), Expect = 0.79
Identities = 54/228 (23%), Positives = 80/228 (34%), Gaps = 36/228 (15%)
Query: 109 CLFSSTQGSGTYYLNTLTTYSAGGASFTQKFNNGTLNVGENIRFGGTGINGGDVGYITGT 168
C ST G+G T SA G TQ F +G VG+ I T + + T
Sbjct: 418 CNNPSTAGTGG------TQGSAPGTVTTQTFASGCAYVGQTI----TNLKNSIAHFGTQE 467
Query: 169 YDAQT--------INFNSSHLTTGNSYADGGGATLNFNAANNIT---------INQASFD 211
Q +NF S + GN+Y A N A ++ + D
Sbjct: 468 QQIQQAENIADTLVNFKSRYSELGNTYNSITTALSNIPNAQSLQNAVSKKNNPYSPQGID 527
Query: 212 NSHAGTQKSYMNFKGSNIKVSGSSFTDDTDGGFSFSGNSNNSTISFNQTSFNQGTYHFSN 271
++ Q SY + N ++ + F S +NN + N G F
Sbjct: 528 TNYYLNQNSYNQIQTINQELGRNPFRKVG----IVSSQTNNGAM--NGIGIQVGYKQFFG 581
Query: 272 SATLSFNHSAFNQGTYNFNSTQSAFNNSAFNQGTYHFNGNA--SFDND 317
+ + YN +S+F NSA + TY F +A +F ND
Sbjct: 582 QKR-KWGARYYGFFDYNHAFIKSSFFNSASDVWTYGFGADALYNFIND 628
Score = 27.3 bits (59), Expect = 5.1
Identities = 17/44 (38%), Positives = 23/44 (51%), Gaps = 6/44 (13%)
Query: 2438 HYFNKNSYYFVIADV-----GRDLFINSMGDKMVRFIG-NNTLS 2475
H F K+S++ +DV G D N + DK F+G NN LS
Sbjct: 598 HAFIKSSFFNSASDVWTYGFGADALYNFINDKATNFLGKNNKLS 641
>ref|NP_223515.1| putative [Helicobacter pylori J99]
Length = 541
Score = 30.0 bits (66), Expect = 0.79
Identities = 16/74 (21%), Positives = 37/74 (49%)
Query: 505 ALQGDLDKLKQLANSPTGFSEQAFNQAQKQEQQDEQTLQNEEKTFNSEQEGLKQAIQQAQ 564
A+Q K + N+P A +A K ++E+ EEK ++ ++ Q+A+
Sbjct: 460 AIQQGETKNNESKNTPISKENAAKKEAPKPSSKEEKRRLKEEKKKAKAEQRAREFEQRAR 519
Query: 565 AQQQKQQQKQEQQQ 578
Q++ +++ E+++
Sbjct: 520 EHQERDEKELEERR 533
Score = 28.9 bits (63), Expect = 1.7
Identities = 18/93 (19%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 511 DKLKQLANSPTGFSEQAFNQAQKQEQQDEQTLQNEEK---------TFNSEQEGLKQAIQ 561
+++K PT A Q + + + + T ++E + E+ LK+ +
Sbjct: 444 EEVKTRRPEPTKDQNNAIQQGETKNNESKNTPISKENAAKKEAPKPSSKEEKRRLKEEKK 503
Query: 562 QAQAQQQKQQQKQEQQQAQQTYQEDLTHSQSAL 594
+A+A+Q+ ++ +Q ++ Q+ +++L + AL
Sbjct: 504 KAKAEQRAREFEQRAREHQERDEKELEERRKAL 536
>ref|NP_223266.1| FLAGELLIN A [Helicobacter pylori J99]
Length = 510
Score = 30.0 bits (66), Expect = 0.79
Identities = 78/370 (21%), Positives = 142/370 (38%), Gaps = 29/370 (7%)
Query: 915 FSNASFSGFTNPGGSSVISANATNSLSFINSRLNGGAVYNLQAN-SLIFNNTQAVFNVLY 973
F+N F S S +T S R+ GA+ + SL F V +V
Sbjct: 142 FTNKEFQVGAYSNQSIKASIGSTTSDKIGQVRIATGALITASGDISLTFKQVDGVNDVTL 201
Query: 974 -------SRGTSNFNATTQLLGNTNFT-LSSQSLLNFNGDTTLQNNA--NITLGNKSQAA 1023
S GT + N+N T + + + + D +Q+ + N+TL
Sbjct: 202 ESVKVSSSAGTGIGVLAEVINKNSNRTGVKAYASVITTSDVAVQSGSLSNLTLNGIHLGN 261
Query: 1024 FKNSLTLDNNSNLSLDNQSVLNANNTSAFNNQAS-LNIYN----GSQATFNSLFFNGGTL 1078
+ D++ L +V + A+ +Q LN+ + G + +S+ L
Sbjct: 262 IADIKKNDSDGRLVAAINAVTSETGVEAYTDQKGRLNLRSIDGRGIEIKTDSVSNGPSAL 321
Query: 1079 SL-NASSKLNASNASFSNNTTINLDD---SVLSASNTSSLNAN-INFQGASQADFGGNTI 1133
++ N L + ++ + LD +V+SAS++ L I F + A+ N
Sbjct: 322 TMVNGGQDLTKGSTNYGRLSLTRLDAKSINVVSASDSQHLGFTAIGFGESQVAETTVNLR 381
Query: 1134 IDTASFNFD--SASSLNFNNLTANGALNFNGYTPSLTKALMSVSGQFVLGNNGDINLSDI 1191
T +FN + SAS N+N + A+G + +L A++ + D SD+
Sbjct: 382 DVTGNFNANVKSASGANYNAVIASGNQSLGSGVTTLRGAMVVIDIAESAMKMLDKVRSDL 441
Query: 1192 NIFDNITKSVTYNILNAQKGITGISGANGYEKILFYGMKIQNATYSDNNNIQTWSFINPL 1251
N S NI IT ++ +I ++A + + NNI S +
Sbjct: 442 GSVQNQMISTVNNI-----SITQVNVKAAESQIRDVDFAEESANF-NKNNILAQSGSYAM 495
Query: 1252 NSSQIIQESI 1261
+ + +Q++I
Sbjct: 496 SQANTVQQNI 505
>ref|NP_223247.1| putative SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEIN [Helicobacter
pylori J99]
Length = 317
Score = 30.0 bits (66), Expect = 0.79
Identities = 14/34 (41%), Positives = 15/34 (43%)
Query: 698 PTSPTPSHAPTPTKHTAPNTPPNKVPPTPPTQNP 731
PT PTP PTP K P K P P + P
Sbjct: 95 PTPPTPPTPPTPPKPIEKPKPEPKPKPKPEPKKP 128
Score = 29.6 bits (65), Expect = 1.0
Identities = 13/35 (37%), Positives = 14/35 (39%)
Query: 697 KPTSPTPSHAPTPTKHTAPNTPPNKVPPTPPTQNP 731
KPT P PTP P TPP + P P
Sbjct: 85 KPTLAGPQKPPTPPTPPTPPTPPKPIEKPKPEPKP 119
Score = 28.5 bits (62), Expect = 2.3
Identities = 15/37 (40%), Positives = 16/37 (42%), Gaps = 1/37 (2%)
Query: 698 PTSPTPSHAPTPTKHTAPNTPPNKVPPTPPTQNPPAE 734
P+ P AP PT P PPTPPT P E
Sbjct: 76 PSKNNPG-APKPTLAGPQKPPTPPTPPTPPTPPKPIE 111
>ref|NP_223054.1| septum formation protein [Helicobacter pylori J99]
Length = 844
Score = 30.0 bits (66), Expect = 0.79
Identities = 45/201 (22%), Positives = 84/201 (41%), Gaps = 30/201 (14%)
Query: 482 NATIKKDAQGLENTNQQIAQDEQALQGDLDKLKQ-LANSPTGFSEQAFNQAQKQEQQDEQ 540
N ++KK+ G ENT D Q + + DK K+ L +P ++ N ++
Sbjct: 168 NFSLKKE--GFENT----PSDSQKKETNNDKEKENLKENPI---DENHNTPNEESFLAIP 218
Query: 541 TLQNEEKTFNSEQEGLKQAIQQAQAQQQ---------------KQQQKQEQQQAQQTYQE 585
T N + QEGL Q ++ KQE ++ + T ++
Sbjct: 219 TPYNTTLNNSEPQEGLVQISPHPPTHYTIYPKRNRFDDLTNPTLKEPKQETKEREPTLKK 278
Query: 586 DLTHSQSALNDVASDNTIASNDTNYTNNQNTAIKEDAQGLENTNQQIAQDEQALQGDLDK 645
+ + + +++ NT + T N IKED L+ + Q+ Q E ++ ++++
Sbjct: 279 ETPTTLKPIMPISASNTENHDKTENHKTPNHPIKED--DLQESPQENPQKEN-IEENIEE 335
Query: 646 LKQLANSPTGFSEQAFNQAQK 666
K+ N+P+ FS A+K
Sbjct: 336 -KETQNAPS-FSPLTLTSAKK 354
>ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 1252
Score = 29.6 bits (65), Expect = 1.0
Identities = 13/40 (32%), Positives = 28/40 (69%), Gaps = 2/40 (5%)
Query: 1617 AIQNIISKKLSIF--GNFVTPSIIENYLAKQSLKSMLDDK 1654
++ ++ +KL+ + G+F TPS I +Y+ K+S+ +++ DK
Sbjct: 437 SVLGLVFEKLNGYKEGSFYTPSFITSYMCKESITTIVLDK 476
>ref|NP_223782.1| ATP synthase B' [Helicobacter pylori J99]
Length = 144
Score = 29.6 bits (65), Expect = 1.0
Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 12/118 (10%)
Query: 477 YTKNKNATIKKDAQGLENTNQQIAQDEQALQGDLDKLKQLANSPTGFSEQAFNQAQKQEQ 536
+ N+ A IK ++ N Q + ++ LK+ A +A QK +
Sbjct: 35 FMDNRQAEIKDSLAKIKTDNTQSVEIGHQIE---TLLKEAAEKRREMLAEAI---QKATE 88
Query: 537 QDEQTLQNEEKTFNSEQEGLKQAIQQAQAQQQKQQQKQEQQQAQQTYQEDLTHSQSAL 594
+ ++ +E N E E + Q Q +KQ K EQ QAQ T ED + + A+
Sbjct: 89 SYDAVIKQKENELNQEFEAFAK-----QLQNEKQILK-EQLQAQMTVFEDELNKRVAM 140
>ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATED IMMUNODOMINANT ANTIGEN
[Helicobacter pylori J99]
Length = 1167
Score = 29.6 bits (65), Expect = 1.0
Identities = 31/167 (18%), Positives = 63/167 (37%), Gaps = 1/167 (0%)
Query: 537 QDEQTLQNEEKTFNSEQEGLKQAIQQAQAQQQKQQQKQEQQQAQQTYQEDLTHSQSALND 596
Q+ L + + N E G +A A+ + E +QAQ+ ++ L + D
Sbjct: 572 QEANKLVKDFLSSNKELVGKALNFNKAVAEAKNTGNYDEVKQAQKDLEKSLKKRERLEKD 631
Query: 597 VASDNTIASNDTNYTNNQNTAIKEDAQGLENTNQQIAQDEQALQGDLDKLKQLANSPTGF 656
VA + S + N ++ A + + N++ +D +A+ LK + +
Sbjct: 632 VAKNLESKSGNKNKMEAKSQANSQKDEIFALINKEANRDARAI-AYAQNLKGIKRELSDK 690
Query: 657 SEQAFNQAQKQEQQDEQTLQNEEKTFNSEQERLKQAIANAKPTSPTP 703
E + + ++ + K F+ +E LK + K P
Sbjct: 691 LENINKDLKDFSKSFDEFKNGKNKDFSKAEETLKALKGSVKDLGINP 737
>ref|NP_223981.1| MAGNESIUM AND COBALT TRANSPORT PROTEIN [Helicobacter pylori J99]
Length = 318
Score = 29.3 bits (64), Expect = 1.3
Identities = 30/141 (21%), Positives = 54/141 (38%), Gaps = 6/141 (4%)
Query: 1810 NTIDFSKYQGALIFASNDVSNINITTLNATNGLSLNAGLNNVSVQKGEICVNLANCPTTK 1869
N I F+ Y G L + + + +G + + V +KG C+ N T+
Sbjct: 101 NNILFTIYYGTLEIFDSIQKKVLASPKKFEDGFDILTKIFEVYFEKGVECLEWINKQTSL 160
Query: 1870 NSSSTNSSVTPTNESLSVRANNFTFLGAIASNGAIDLSQVKNNSVIDTLNLNENAALQAN 1929
+ T T++ + VR +N + D K + L N+ + N
Sbjct: 161 LRKNIIFKETSTHDDILVRLSNLQEFNVALRDSFFD----KRRIITALLRSNKVDSDTKN 216
Query: 1930 NLTI--TNAFNNASNSTANIN 1948
NL I T+ + ++T N+N
Sbjct: 217 NLNIILTDFSSLVESTTVNLN 237
>ref|NP_223788.1| putative [Helicobacter pylori J99]
Length = 433
Score = 29.3 bits (64), Expect = 1.3
Identities = 44/205 (21%), Positives = 82/205 (39%), Gaps = 11/205 (5%)
Query: 478 TKNKNATIKKDAQGLENTNQQIAQDE---QALQGDLDKLKQLANSPTGFSEQAFNQAQKQ 534
++N++ + + + N++ AQ + + L+ + LK+ A ++A QA
Sbjct: 30 SENQSRFLAQQKAFEKEVNEKRAQYQSYFKNLEQKEEALKERAKEQQAQFDEAVKQASAL 89
Query: 535 EQQDEQTLQNEEKTFNSEQEGLKQAIQQAQAQQQKQQQKQEQQQAQQTYQEDLTHSQSAL 594
QDE+ EE N+ E K + +K +Q QE Q + +
Sbjct: 90 ALQDERAKIIEEARKNAFLEQQKGLELLQKELDEKSKQVQELHQKEAEIER-----LKRE 144
Query: 595 NDVASDNTIASNDTNYTNNQNTAIKEDAQGLENTNQ-QIAQDEQALQGDLDKLKQLANSP 653
N+ A A N+ ++ + L N+ + Q E+ L+ ++LK A
Sbjct: 145 NNEAESRLKAENEKKLNEKLELEREKIEKALHEKNELKFKQQEEQLEMLRNELKN-AQRK 203
Query: 654 TGFSEQAFNQAQKQEQQDEQTLQNE 678
S Q F Q + QE E+ L+ +
Sbjct: 204 AELSSQQF-QGEVQELAIEEFLRQK 227
>ref|NP_223566.1| Outer membrane protein/porin [Helicobacter pylori J99]
Length = 520
Score = 29.3 bits (64), Expect = 1.3
Identities = 38/143 (26%), Positives = 57/143 (39%), Gaps = 16/143 (11%)
Query: 517 ANSPTGFSEQAFNQAQKQEQQDEQTLQNEEKTFNSEQEGLKQ---AIQQAQAQQQKQQQK 573
ANS + S + Q QQ Q LQ ++ N+ LKQ ++ +
Sbjct: 196 ANSTSSTSGATGSDGQTYSQQAIQYLQGQQNILNNAANLLKQDELLLEAFNSAVAANIGN 255
Query: 574 QEQQQAQQT--YQEDLTHSQSALNDVASDNTI---ASNDTNYTNNQNTAIKEDAQGLENT 628
+E A T Q + SQ N++ + NTI A N+ +NQ A++ A L N
Sbjct: 256 KEFNSAAFTGLVQGIIDQSQLVYNEL-TKNTISGSAVNNAGINSNQANAVQGRASQLPNA 314
Query: 629 NQQIAQDEQALQGDLDKLKQLAN 651
+ Q LDK+ L N
Sbjct: 315 LYNV-------QVTLDKINALNN 330
Score = 29.3 bits (64), Expect = 1.3
Identities = 59/271 (21%), Positives = 101/271 (36%), Gaps = 45/271 (16%)
Query: 1783 VNNSSFSNATGGSLNFVANKSIIFNGDNTIDFSKYQGALIFASNDVSNINITTLNATNGL 1842
V N+ +N TGG++ + + FS+Y +L+ A T LN N +
Sbjct: 60 VTNNILNNNTGGNVAGALSNA----------FSQYLYSLLGAYP-------TKLNG-NDV 101
Query: 1843 SLNAGLNNVSVQKGEICVNLANCPTTKNSSSTNSSVTPTNESLSVRANNFTFLGAIASNG 1902
S NA L+ V C + T N + A + +L ++
Sbjct: 102 SANALLSGA--------VGSGTCAAAGTAGGTT-----LNTQSACTAAGYYWLPSLTDR- 147
Query: 1903 AIDLSQVKNNSVIDTLNLNENAALQANNLTITNAFNNASNSTANINGNFTLNQQATLS-- 1960
LS + + + T N Q L N F NA N NG T N ++ S
Sbjct: 148 --ILSTIGSQTNYGTNTNFPNMQQQLTYLNAGNVFFNAMNKALEKNGTATANSTSSTSGA 205
Query: 1961 TNASGLNVMGNFNSYGDLVFNLSHSVSH------AIINAQGSATIMANNNNPLIQFNTSS 2014
T + G Y N+ ++ ++ ++ A SA + AN N +FN+++
Sbjct: 206 TGSDGQTYSQQAIQYLQGQQNILNNAANLLKQDELLLEAFNSA-VAANIGNK--EFNSAA 262
Query: 2015 KEVGTYTLIDSAKAIYYGYNNQITGGSSLDN 2045
+ID ++ +Y GS+++N
Sbjct: 263 FTGLVQGIIDQSQLVYNELTKNTISGSAVNN 293
Score = 28.9 bits (63), Expect = 1.7
Identities = 39/170 (22%), Positives = 60/170 (34%), Gaps = 19/170 (11%)
Query: 1072 FFNGGTLSLNASSKLNASNASFSNNTTINLDDSVLSASNTSSLNANINFQGASQADFGGN 1131
+ N G + NA +K N + + N+T + + S T S A QG
Sbjct: 173 YLNAGNVFFNAMNKALEKNGTATANSTSSTSGATGSDGQTYSQQAIQYLQGQQNILNNAA 232
Query: 1132 TIIDTASF---NFDSASSLNFNNLTANGALNFNGYTP-----------SLTKALMSVSGQ 1177
++ F+SA + N N N A F G LTK ++SG
Sbjct: 233 NLLKQDELLLEAFNSAVAANIGNKEFNSAA-FTGLVQGIIDQSQLVYNELTK--NTISGS 289
Query: 1178 FVLGNNGDINLSDINIFDNITKSVTYNILNAQKGITGISGANGYEKILFY 1227
V NN IN + N + + N Q + I+ N + + Y
Sbjct: 290 AV--NNAGINSNQANAVQGRASQLPNALYNVQVTLDKINALNNQVRSMPY 337
Score = 26.6 bits (57), Expect = 8.7
Identities = 31/176 (17%), Positives = 64/176 (35%), Gaps = 14/176 (7%)
Query: 163 GYITGTYDAQTINFN--SSHLTTGNSYADGGGATLNFNAANNITINQASFDNSHAGTQKS 220
G + G D + +N + + +G++ + G +N N AN + + N+ Q +
Sbjct: 265 GLVQGIIDQSQLVYNELTKNTISGSAVNNAG---INSNQANAVQGRASQLPNALYNVQVT 321
Query: 221 YMNFKGSNIKVSGSSFTDDTDGGFSFSGNSNNSTISFNQTSFNQGTYHFSNSATLSFNHS 280
N +V + G S + N N + + + Q F + +
Sbjct: 322 LDKINALNNQVRSMPYLPQFRAGNSRATNILNGF--YTKVGYKQ---FFGKKRNIGLRYY 376
Query: 281 AFNQGTYNFNSTQSAFNNSAFNQGTYHFNGNASFDNDTFNQGTYSFNTSKVSFSGI 336
F +++N F ++ N G Y + + F++ + + FSGI
Sbjct: 377 GF----FSYNGASVGFRSTQNNVGLYTYGVGTDVLYNIFSRSYQNRSVDMGFFSGI 428
>ref|NP_223474.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 272
Score = 29.3 bits (64), Expect = 1.3
Identities = 17/44 (38%), Positives = 26/44 (58%), Gaps = 5/44 (11%)
Query: 2229 LEALKNKRFADAIPNAMDVILKYSQRNRVKNNVW--ATGVGGAS 2270
+E L + ADA N ILK ++ + KNN+W A G+GG++
Sbjct: 153 MEMLVTNKGADAKNNK---ILKELKKEKTKNNIWHYAVGLGGST 193
>ref|NP_223147.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 371
Score = 29.3 bits (64), Expect = 1.3
Identities = 34/126 (26%), Positives = 54/126 (41%), Gaps = 15/126 (11%)
Query: 1488 FKAKSIYITGTIGSGNAFESGGSADVTFQSANNLVLNKANIEAQATDNIFNLLGQKGIEK 1547
F + S++++ +I A E+G A V F+ + + + N L Q+ I+
Sbjct: 13 FLSLSLFLSFSI----AEENGAYASVGFEYSISHAVEHNN----------PFLNQERIQT 58
Query: 1548 IFNQGNLANVLSQVAMEKIKQAGGLGNFIENALSPLSKELPASLQNETLGQLIGQNNLDD 1607
I N N L+QV E I N+I NAL +K P Q ET N++
Sbjct: 59 ISNAQNKIYKLNQVKNE-ITNMPNTFNYINNALKNNAKLTPTEKQAETYYLQSTLQNIEK 117
Query: 1608 LLNNSG 1613
++ SG
Sbjct: 118 IVMLSG 123
>ref|NP_222894.1| putative [Helicobacter pylori J99]
Length = 268
Score = 29.3 bits (64), Expect = 1.3
Identities = 40/207 (19%), Positives = 77/207 (36%), Gaps = 13/207 (6%)
Query: 498 QIAQDEQALQGDLDKLKQLANSPTGFSEQAFNQAQKQEQQDEQTLQNEEKTFNSEQEGLK 557
++A E LQ D ++++ N+ + F + E L ++
Sbjct: 47 RVAPKETFLQTD-SGMQKIGNTKDEKKDDEFESLNMDSPKQEDKLDKVVDNIKKQESENS 105
Query: 558 QAIQ--QAQAQQQKQQQKQEQQQAQQTYQEDLTHSQSALNDVASDNT------IASNDTN 609
IQ QAQ + + ++KQE Q+ + + +Q VA T +A D
Sbjct: 106 MPIQTDQAQMEMKTTEEKQESQKELKAVEPIPMSTQKESQAVAKKETPHKKPKVAPKDKE 165
Query: 610 -YTNNQNTAIKE---DAQGLENTNQQIAQDEQALQGDLDKLKQLANSPTGFSEQAFNQAQ 665
+ + A KE + + +++ +G ++ A++P Q FNQ
Sbjct: 166 AHKDKAKHAAKEPKVKKEARKEVSKKANSKTNLTKGHYLQVGVFAHTPNKAFLQEFNQFP 225
Query: 666 KQEQQDEQTLQNEEKTFNSEQERLKQA 692
+ + T + + S+QE L A
Sbjct: 226 HKIEDRGATKRYLIGPYKSKQEALMHA 252
>ref|NP_223820.1| putative Outer membrane function [Helicobacter pylori J99]
Length = 643
Score = 28.9 bits (63), Expect = 1.7
Identities = 78/372 (20%), Positives = 127/372 (33%), Gaps = 67/372 (18%)
Query: 759 NLSGQSGQSGNTLSTYTANLFGRSFSVNIQNGTLIIGNNTESVNSNGLIWIGHGGFGYIT 818
NL Q+ NTL Y L +S S NG NT S W GG
Sbjct: 245 NLLTQAQTIVNTLKDYCPMLIAKSSSNGGTNGA-----NTPS-------WQTAGGGKNSC 292
Query: 819 GTFSAANIYLTNNFKTGEGVSNSDGGGANITFKASDNITM-DGLNYNDAETVTKMIQTGA 877
TF A +++ + + + NIT + N N ++T + Q+
Sbjct: 293 ATFGAEFSAISDMISNAQKIVQET---QQLNANQPKNITQPNNFNLNSPGSLTALAQS-M 348
Query: 878 SQHSYATFDALNNISVTNSSFSDMTWGKFSFSAKNISFSNASFSGFTNPGGSSVISANAT 937
+++ + + L + S F ++ G S S S T ++
Sbjct: 349 LKNAQSQTEILKLANQVASDFDKLSSGYLKDYIGKCDVSGVSSSNMTPQNMNTTWGKGCA 408
Query: 938 NSLSFINSRLNGGAVYNLQANSLIFNNTQAVFNVLYSRGTSNFNATTQLLGNTNFTLSSQ 997
+ S L+A++ FNN + + N TQ LGN F
Sbjct: 409 GVEETLTS---------LKASTTDFNNQTTP---QLDQAQTLANTLTQELGNNPF--KRV 454
Query: 998 SLLNFNGDTTLQNNANITLGNKS-----------------------QAAFKNS----LTL 1030
++ + N + G K +++F NS LT
Sbjct: 455 GIIGSQTNNGAMNGLGVQAGYKQFFGQKRRWGLRYYGFFDYNHTYIKSSFFNSSSDVLTY 514
Query: 1031 DNNSNLSLDNQSVLNANNTSAF--NNQASLNIYNG----SQATFNSLFFNGGTLSLNASS 1084
S+L + +N NT+ NN+ S+ ++ G + NS F N T+S S+
Sbjct: 515 GVGSDLLFN---FINDKNTNFLGKNNKISVGLFGGIALAGTSWLNSQFVNLKTISNVYSA 571
Query: 1085 KLNASNASFSNN 1096
K+N +N F N
Sbjct: 572 KVNTANFQFLFN 583
Score = 27.3 bits (59), Expect = 5.1
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 2438 HYFNKNSYYFVIADV-----GRDLFINSMGDKMVRFIGNN 2472
H + K+S++ +DV G DL N + DK F+G N
Sbjct: 497 HTYIKSSFFNSSSDVLTYGVGSDLLFNFINDKNTNFLGKN 536
>ref|NP_223775.1| BIOPOLYMER TRANSPORT PROTEIN [Helicobacter pylori J99]
Length = 189
Score = 28.9 bits (63), Expect = 1.7
Identities = 33/123 (26%), Positives = 48/123 (38%), Gaps = 23/123 (18%)
Query: 1055 QASLNIYNGSQATFNSLFFNGGTLSLNASSKLNASNASFSNNTTINLDDSVLSASNTSSL 1114
Q+ NI NG+Q FN K N +SN VL S T +
Sbjct: 50 QSLSNILNGAQDAPEHFMFN---------KKRNDETKRYSNELLQAWKHQVLKQSTTGLV 100
Query: 1115 NANINFQGASQADFGG--NTIIDTASFNFDSASSLNFNNLTANGALNFNGYTPSLTKALM 1172
+I +S A F G T+++ FNNL A G +F P ++KAL+
Sbjct: 101 VLSII---SSTAPFIGLFGTVVEILEA---------FNNLGALGQASFGVIAPIISKALI 148
Query: 1173 SVS 1175
+ +
Sbjct: 149 ATA 151
>ref|NP_223200.1| cag island protein [Helicobacter pylori J99]
Length = 199
Score = 28.9 bits (63), Expect = 1.7
Identities = 12/44 (27%), Positives = 28/44 (63%)
Query: 1356 SENLKTLLGILSQNSATLKEMIESNQLDNITNINEVLQLLDKIK 1399
S N++ L +++ + +++IES Q + + N +E +++D+IK
Sbjct: 2 SNNMRKLFSMIANSKDKKEKLIESLQENELLNTDEKKKIIDQIK 45
>ref|NP_223725.1| putative outer membrane protein [Helicobacter pylori J99]
Length = 751
Score = 28.5 bits (62), Expect = 2.3
Identities = 67/297 (22%), Positives = 111/297 (36%), Gaps = 57/297 (19%)
Query: 954 NLQANSLIFNNTQAVFNVLYSRGTSNFNATTQLLGNTNFTLSSQSLLNFNGDTTLQNNAN 1013
N+ N L F + V+ + Y++ + F GN N + Q+ L +N NN
Sbjct: 113 NINGNGLTFYSQNPVYVMAYNKDNAEFEG----YGN-NSVVVIQNFLPYN-----LNNIE 162
Query: 1014 ITLGNKSQAAFKNSLTLDNNSNLSLDNQSVLNANNTSAFNNQASLNIYNGSQA-TFNSLF 1072
++ + A + L + D+Q +L A+ + F+N + N Q T + F
Sbjct: 163 LSYTDAQGKA----VNLGVIETIPKDSQIILPASLFNNFSNDSPFNSDGLQQLQTTTTPF 218
Query: 1073 FNGGTLSLNASSKLNASNASFSNNTTINLDDSVLSASNTSSLNANINFQGASQADF---- 1128
+ T SL KL+ T NL + + SS N + N AS
Sbjct: 219 SDANTQSL--FEKLS--------QITTNLQMTYENTDPFSSGNNDPNGPLASPKPHYECP 268
Query: 1129 GGNTIIDTASFNFDSASSLNFNNLTANGALNFNGYTPSLTKALMSVSGQFVLG------- 1181
G AS +F ++ NL + F+ + S +A+++ QF
Sbjct: 269 GYKKSCQVASVSFTPQTAEELTNLMLDMIAVFD--SKSWEEAVLNAPFQFSNSPSECGID 326
Query: 1182 --------NNGDINLSD----------INIFDNITKSVTYNILNAQKGITGISGANG 1220
NNG ++ D IN + + +T N+LNA KG G+ G
Sbjct: 327 YPKCVNPFNNGLVDPKDEKYALTPEEVINSY-RVANELTVNLLNAAKGFLGLGSQLG 382
>ref|NP_223575.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 366
Score = 28.5 bits (62), Expect = 2.3
Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Query: 1540 LGQKGIEKIFNQGNLANVLSQVAMEKIKQAGGLGNFIENALSPLSKELPASLQNETLGQL 1599
L Q+ I+ I N N L+QV E I N+I NAL +K P Q ET
Sbjct: 46 LNQERIQTISNAQNKIYKLNQVKNE-ITNMPNTFNYINNALKNNAKLTPTEKQAETYYLQ 104
Query: 1600 IGQNNLDDLLNNSG 1613
N++ ++ SG
Sbjct: 105 STLQNIEKIVMLSG 118
>ref|NP_223978.1| SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEIN [Helicobacter pylori
J99]
Length = 280
Score = 28.1 bits (61), Expect = 3.0
Identities = 22/92 (23%), Positives = 30/92 (31%), Gaps = 2/92 (2%)
Query: 644 DKLKQLANSPTGFSEQAFNQAQKQEQQDEQTLQNEEKTFNSEQERLKQAIANAKPTSPTP 703
+ L Q + S + N + E EE ++E K+ K T P P
Sbjct: 41 EPLAQAGTTKVTMSLASINTNSNTKTNAESAKPKEEPKEKPKKEEPKKEEPK-KETKPKP 99
Query: 704 SHAPTPTKHTAPNTPPNKVP-PTPPTQNPPAE 734
P P P P P P P + P E
Sbjct: 100 KPKPKPKPKPKPKPKPEPKPKPEPKVEEPKKE 131
>ref|NP_222952.1| FLAGELLAR P-RING PROTEIN [Helicobacter pylori J99]
Length = 342
Score = 28.1 bits (61), Expect = 3.0
Identities = 48/210 (22%), Positives = 81/210 (37%), Gaps = 16/210 (7%)
Query: 929 SSVISANATNSLSFINSRLNG--GAVYNLQANSLIFNNTQAVFNVLYSRGTSNFNATTQL 986
SS+ A + + + + LN G +Y L ++I N+ + + G + +
Sbjct: 106 SSIGDAKSIQGGTLVMTPLNAVDGNIYALAQGAIISGNSSNLLSANIINGATIEREVSYD 165
Query: 987 LGNTNFTLSSQSLLNFNGDTTLQNNANITLGNKSQAAF-KNSLTLDNNSNLSLDNQSVLN 1045
L + N S NF +QN N GNK A ++ + LS+ L
Sbjct: 166 LFHKNAMTLSLKNPNFKNAIQVQNTLNKVFGNKVAIALDPKTIQITRPERLSMVEFLALV 225
Query: 1046 AN---NTSAFN----NQASLNIYNGSQATFNSLFFNGGTLSLNASSK-LNASNASFSNNT 1097
N SA N ++ S I +G + + ++L + + LN S +
Sbjct: 226 QEIPINYSAKNKIIVDEKSGTIVSGVDIIVHPIVVTSQDITLKITKEPLNDSKNMQDLDN 285
Query: 1098 TINLDDSVLSASNTSSLNA-NINFQGASQA 1126
++LD +A NT S N NI G +A
Sbjct: 286 NMSLD----TAHNTLSSNGKNITIAGVVKA 311
>ref|NP_223625.1| putative [Helicobacter pylori J99]
Length = 362
Score = 27.7 bits (60), Expect = 3.9
Identities = 31/174 (17%), Positives = 70/174 (39%), Gaps = 16/174 (9%)
Query: 450 YQQDLSNSQSALNNAA--SDNKIANSDTD-YTKNKNATIKKDAQGL----ENTNQQIAQD 502
Y +L + + N + N+ AN+D + Y + I++ + +++N Q Q
Sbjct: 166 YHDNLKDMIKSYNKGSRWEKNEKANADAEKYYEEIQDRIRRLKESKIFDSQSSNDQELQK 225
Query: 503 EQALQGDLDKLKQLANSPTGFSEQAFNQAQKQEQQDEQTLQNEEKTFNSEQEGLKQAIQQ 562
DLD + +E +Q +K + ++ QT +++E +K+A +
Sbjct: 226 SANSNLDLDPIGNAMPQTLAQTETQKSQIEKSQIEEAQTQKSQE---------MKEAASE 276
Query: 563 AQAQQQKQQQKQEQQQAQQTYQEDLTHSQSALNDVASDNTIASNDTNYTNNQNT 616
++ +++K + Q D ++ + A + S+ N + NT
Sbjct: 277 QAIKKPLEKEKDKPMYLAQINSADFAPAKKSPKKPAKASPKRSSKNNISVKSNT 330
Score = 26.6 bits (57), Expect = 8.7
Identities = 21/110 (19%), Positives = 44/110 (39%), Gaps = 5/110 (4%)
Query: 626 ENTNQQIAQDEQALQGDLDKLKQLANSPTGFSEQAFNQAQKQEQQDEQTLQNEEKTFNSE 685
+++N Q Q DLD + +E +Q +K + ++ QT +++E +
Sbjct: 216 QSSNDQELQKSANSNLDLDPIGNAMPQTLAQTETQKSQIEKSQIEEAQTQKSQEMKEAAS 275
Query: 686 QERLKQAIANAKPTSPTPSHAPTPTKHTAPNTPPNKVPPTPPTQNPPAES 735
++ +K+ + K + ++A P K P P +P S
Sbjct: 276 EQAIKKPLEKEKDKPMYLAQI-----NSADFAPAKKSPKKPAKASPKRSS 320
>ref|NP_223215.1| TRANSCRIPTION TERMINATION FACTOR [Helicobacter pylori J99]
Length = 438
Score = 27.7 bits (60), Expect = 3.9
Identities = 36/169 (21%), Positives = 72/169 (42%), Gaps = 22/169 (13%)
Query: 1168 TKALMSVSGQFVLGNNGDINLSDINIFDNITKSVTYNILNAQKGITGISGANGYEKILFY 1227
T+ L+ ++ + + N + D+ +F+ + VT GI I +GY + +
Sbjct: 33 TEKLLEIANKLKVENPQEFKRQDL-MFEILKTQVTQGGYILFTGILEIM-PDGYGFLRGF 90
Query: 1228 GMKIQNATYSDNNNIQTWSFINPLNSSQIIQESIKNGDLTIEVLNNPNSASNTIFNIAPE 1287
+ ++SD +N ++++P SQI + +++NGD+ + +P + E
Sbjct: 91 -----DGSFSDGHND---TYVSP---SQIRRFALRNGDIVTGQVRSPKDQEKYYALLKIE 139
Query: 1288 LYNYQASKQNPTGYSYD-----YSDNQAGTYYLTSNIKG----LFTPKG 1327
NY S + +D + D Q Y + + G LF+P G
Sbjct: 140 AINYLPSDEIKNRPLFDNLTPLFPDEQIKLEYEPTKVTGRMLDLFSPVG 188
>ref|NP_223072.1| COPPER-TRANSPORTING P-TYPE ATPASE [Helicobacter pylori J99]
Length = 745
Score = 27.7 bits (60), Expect = 3.9
Identities = 21/87 (24%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
Query: 1651 LDDKGLLNFIGGYMNASELSSILSVVLKDITNPPTSLQKDIGVVANDLLNEFL----GQD 1706
+ + G+L F+G +N E + + VL+D+ P +++ I + N +N FL ++
Sbjct: 532 IKENGILVFVGRAINEKEDELLGAFVLEDL--PKKGVKEHIAQIKNLGINTFLLSGDNRE 589
Query: 1707 VIKKLESQGLVSNIINNIISQGGLSGV 1733
+KK + + I+N Q L+ +
Sbjct: 590 NVKKCALELGIDGYISNAKPQDKLNKI 616
>ref|NP_222812.1| methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
Length = 675
Score = 27.7 bits (60), Expect = 3.9
Identities = 19/71 (26%), Positives = 31/71 (42%), Gaps = 4/71 (5%)
Query: 635 DEQALQGDLDKLKQLANSPTGFSEQAFN----QAQKQEQQDEQTLQNEEKTFNSEQERLK 690
+ QA D+ ++ +N G + A N Q QK Q+D Q +Q+ K + +
Sbjct: 346 NNQAHSSDIKLVEARSNDELGRMQTAINKNILQTQKTMQEDRQAVQDTIKVVSDVKAGNF 405
Query: 691 QAIANAKPTSP 701
A+P SP
Sbjct: 406 AVRITAEPASP 416
Score = 26.9 bits (58), Expect = 6.6
Identities = 34/187 (18%), Positives = 74/187 (39%), Gaps = 24/187 (12%)
Query: 492 LENTNQQIAQDEQALQGDLDKLKQLANSPTGFSEQAFNQAQKQEQQDEQTLQNEEKTFNS 551
++N + ++ AL ++ K+ + +++ F++ N + ++ +QN EK NS
Sbjct: 459 IQNASGRVELVTNALGQEIQKMLETSSN---FAKDLANDSANLKE----CVQNLEKASNS 511
Query: 552 EQEGLKQAIQQAQAQQQKQQQKQEQQQAQQTYQEDLTHSQSALNDVASDNTIASNDTNYT 611
+ + L + + + Q Q +A +D+ + D+A + +
Sbjct: 512 QHKSLMETSKTIENITTSIQGVSSQSEAMIEQGKDIKSIVEIIRDIADQTNLLA------ 565
Query: 612 NNQNTAIKEDAQGLENTNQQIAQDE-----QALQGDLDKLKQ----LANSPTGFSEQAFN 662
N AI+ G + DE + Q L +++ L S + SE N
Sbjct: 566 --LNAAIEAARAGEHGRGFAVVADEVRKLAERTQKSLSEIEANINILVQSISDTSESIKN 623
Query: 663 QAQKQEQ 669
Q ++ E+
Sbjct: 624 QVKEVEE 630
>ref|NP_224144.1| putative IRON(III) DICITRATE TRANSPORT PROTEIN [Helicobacter pylori
J99]
Length = 841
Score = 27.3 bits (59), Expect = 5.1
Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 16/93 (17%)
Query: 1211 GITGISGANGYEKILFYGMKIQNATYSDNNNIQTWSFINPLNSSQIIQESIKN---GDLT 1267
G+ SG N YE +L G + + + + + W ++ + SQI E+ ++ G L
Sbjct: 745 GMQYYSGGNNYESVLNSGYQCEAWCMTQHEGLLPWYWVWNIQVSQIFWENGRHRVTGSLQ 804
Query: 1268 IEVLNNPNSASNTIFNIAPELYNYQASKQNPTG 1300
I N IFN+ Y + +P G
Sbjct: 805 I----------NNIFNMK---YYFTGIGSSPAG 824
>ref|NP_223779.1| ATP synthase F1, subunit alpha [Helicobacter pylori J99]
Length = 503
Score = 27.3 bits (59), Expect = 5.1
Identities = 18/61 (29%), Positives = 27/61 (43%), Gaps = 3/61 (4%)
Query: 1986 VSHAIINAQGSATIMANN---NNPLIQFNTSSKEVGTYTLIDSAKAIYYGYNNQITGGSS 2042
V + A G A I N + +++F T K V DS I +G+ N I G+S
Sbjct: 29 VGKVVSYADGVAKIYGLNGVMSYEVLEFETGDKGVAANLEEDSVGVIVFGFGNNIKEGTS 88
Query: 2043 L 2043
+
Sbjct: 89 V 89
>ref|NP_223536.1| CYSTEINYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 465
Score = 27.3 bits (59), Expect = 5.1
Identities = 30/140 (21%), Positives = 54/140 (38%), Gaps = 21/140 (15%)
Query: 1775 FLSNGYVFVNNSSFSNATGGSLNFVANKSIIFNGD---NTIDFSKYQGALIFASND---- 1827
++ NG+V +NN S + G S F+ + ++G+ N + Y+ L F D
Sbjct: 257 WMHNGFVNINNEKMSKSLGNSF-FIKDALKNYDGEILRNYLLGVHYRSVLNFNEEDLLMS 315
Query: 1828 ------VSNINITTLNATNGLSLNAGLNNVSVQKGEICVNLANCPTTKNSSSTNSSVTPT 1881
+ + L G++ N + + ++ V +K S S ++ T
Sbjct: 316 KKRLDKIYRLKQRVLGTLGGINPNFKKEILECMQDDLNV-------SKALSVLESMLSST 368
Query: 1882 NESLSVRANNFTFLGAIASN 1901
NE L N G I +N
Sbjct: 369 NEKLDQNPKNKALKGEILAN 388
>ref|NP_223169.1| putative PHOSPHOLIPASE A1 [Helicobacter pylori J99]
Length = 355
Score = 27.3 bits (59), Expect = 5.1
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
Query: 1269 EVLNNPNSASNTIFNIAPEL-YNYQASKQNPTGYSYDYSDNQAGTYYLTSNIKGL----- 1322
++ N+P SA + N PEL Y Y + + G ++S+ G ++++ + G
Sbjct: 140 QIYNDPQSAPMRMINFMPELIYVYPINFKPFGGKIGNFSEIWIGWQHISNGVGGAQCYQP 199
Query: 1323 FTPKGSQTPQAPG 1335
F +G+ Q PG
Sbjct: 200 FNKEGNPENQFPG 212
>ref|NP_223001.1| putative FLAGELLAR-HOOK ASSOCIATED PROTEIN 3 (HAP3) [Helicobacter
pylori J99]
Length = 828
Score = 27.3 bits (59), Expect = 5.1
Identities = 15/69 (21%), Positives = 28/69 (39%)
Query: 243 GFSFSGNSNNSTISFNQTSFNQGTYHFSNSATLSFNHSAFNQGTYNFNSTQSAFNNSAFN 302
G +G N+ + +T FN+ ++ + + A N T ++ + NS FN
Sbjct: 485 GLEVAGIPTNNASEYQKTYFNKEGAKLESNVAQTAQNDAANGSTKLSEVSKGSLENSVFN 544
Query: 303 QGTYHFNGN 311
NG+
Sbjct: 545 MKLNDVNGS 553
>ref|NP_222990.1| putative [Helicobacter pylori J99]
Length = 523
Score = 27.3 bits (59), Expect = 5.1
Identities = 26/85 (30%), Positives = 40/85 (46%), Gaps = 4/85 (4%)
Query: 1338 SPFNQPLSSLNIYNKGFSSENLKTLLGILSQNSATLKEMIESNQLDNITNINEVLQLLDK 1397
+PF + NI N + + + GI S LK N +N T++ EVL+LLD+
Sbjct: 105 NPFKDLIERPNIPNIPNIANPIAIIDGISFIKSMRLKH---ENLKNNQTSLGEVLKLLDQ 161
Query: 1398 IKITQVQKQALLETINHLTDNINQT 1422
K + + L+ L+D I QT
Sbjct: 162 -KHQLLNQWHALDKSAKLSDEIYQT 185
>ref|NP_222793.1| 30S RIBOSOMAL PROTEIN S20 [Helicobacter pylori J99]
Length = 89
Score = 27.3 bits (59), Expect = 5.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 9 ISKFISKGSFKLNKISKKIFTLNQILK 35
+ KF+SKG K N S+K+ LN +K
Sbjct: 58 LHKFVSKGILKKNTASRKVSRLNASVK 84
>ref|NP_223767.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 321
Score = 26.9 bits (58), Expect = 6.6
Identities = 40/191 (20%), Positives = 68/191 (34%), Gaps = 37/191 (19%)
Query: 960 LIFNNTQAVFN-VLYSRGTSNFNATTQLLGNTNFTLSSQS----LLNFNGDTTLQNNANI 1014
LI + Q F ++ + + + Q+L + +F L+ + ++ F D L+ N
Sbjct: 117 LIHHKQQETFKTIIKALQEAGYTTHYQILNSADFQLAQKRERLYIVGFRKD--LKRPFNF 174
Query: 1015 TLGNKSQAAFKNSLTLDNNSNLSLDN------------------QSVLNANNTSAFNNQA 1056
LG + FK+ L DN L + N + +L N Q+
Sbjct: 175 PLGLANDYCFKDFLDADNECYLDVSNATFQRYLRNPYNHNRVFLEDILTLENAVLDTRQS 234
Query: 1057 SL----NIYNGSQATFNSLFF--NGGTLSLNASSKLNASN------ASFSNNTTINLDDS 1104
L N++ + + + LF+ G LNA L A NN
Sbjct: 235 DLRLYFNVFPTLRTSRHGLFYTQKGKIKRLNAVESLLLQGFPRDLIAKIKNNPNFKESHL 294
Query: 1105 VLSASNTSSLN 1115
+ A N S+N
Sbjct: 295 LSQAGNAMSVN 305
>ref|NP_222961.1| putative [Helicobacter pylori J99]
Length = 142
Score = 26.9 bits (58), Expect = 6.6
Identities = 21/105 (20%), Positives = 46/105 (43%), Gaps = 9/105 (8%)
Query: 481 KNATIKKDAQGLENTNQQIAQDEQALQGDLDKLKQLANSPTG-----FSEQAFNQAQKQE 535
K ++K + LE+ ++ Q+E+ + +L N G Q A + E
Sbjct: 12 KTLALEKIERKLESKRLELQQNEREVLDKQAQLSAFKNPELGGMSLFLQTQQLKSALRME 71
Query: 536 ----QQDEQTLQNEEKTFNSEQEGLKQAIQQAQAQQQKQQQKQEQ 576
QQ+ + L + K + Q +++A+ +K++QK+++
Sbjct: 72 IEYYQQEGENLTKDLKILEKDYLLANQELEKAKIILEKEKQKEKE 116
>ref|NP_222850.1| L-lactate permease [Helicobacter pylori J99]
Length = 551
Score = 26.9 bits (58), Expect = 6.6
Identities = 26/95 (27%), Positives = 39/95 (40%), Gaps = 6/95 (6%)
Query: 300 AFNQGTYHFNG--NASFDNDTFNQGTYSFNTSKV-SFSGINTLNSSSPFASLKGSVSFG- 355
AF+ + FN N F + F + S N V INT+ +S A+L +
Sbjct: 327 AFSNFYFEFNNISNHIFKSPPFVEANQSVNFPVVFKLLLINTVGTSIFLAALVSMLVLRV 386
Query: 356 --SDAIFNLNQTLNNQTYDILTTNGAIQYGVYQSY 388
SDA+ +TL Y ILT + + +Y
Sbjct: 387 RVSDALSVFGETLKEMRYPILTIGLVLSFAYVSNY 421
>ref|NP_223657.1| putative [Helicobacter pylori J99]
Length = 325
Score = 26.6 bits (57), Expect = 8.7
Identities = 12/36 (33%), Positives = 18/36 (49%)
Query: 2027 KAIYYGYNNQITGGSSLDNYLKLYTLIDINGKHMVM 2062
K YY + Q LD L++Y ID+N H ++
Sbjct: 222 KINYYDFLTQTNNKDCLDALLRIYPRIDMNKIHSII 257
>ref|NP_223423.1| MOLYBDOPTERIN COFACTOR BIOSYNTHETIC PROTEIN [Helicobacter pylori J99]
Length = 321
Score = 26.6 bits (57), Expect = 8.7
Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 9/77 (11%)
Query: 1344 LSSLNIYNKGFSSENLKTLLGILSQNSATLKEMIESNQLDNITNINEVLQLLDKIKITQV 1403
++ L+ YNK + +LS N +LK+M + + ++ +N L L ++ ++
Sbjct: 80 IAKLHAYNKEVAL--------VLSTNGFSLKKMAKGLKDAGLSRVNVSLDSLKSDRVLKI 131
Query: 1404 -QKQALLETINHLTDNI 1419
QK AL T+ + +++
Sbjct: 132 SQKDALKNTLEGIEESL 148
>ref|NP_223234.1| putative [Helicobacter pylori J99]
Length = 366
Score = 26.6 bits (57), Expect = 8.7
Identities = 15/45 (33%), Positives = 23/45 (50%), Gaps = 1/45 (2%)
Query: 19 KLNKISKKIFTLNQILKCEKPLKRHKKALKPIKKLS-NRNKSFLK 62
+L K K +L+C LK H + LKP K N +++FL+
Sbjct: 147 RLQKALKSSKDAKNLLECALSLKTHLEELKPAKTFPLNTSEAFLE 191
>ref|NP_223137.1| putative [Helicobacter pylori J99]
Length = 115
Score = 26.6 bits (57), Expect = 8.7
Identities = 12/58 (20%), Positives = 35/58 (59%), Gaps = 1/58 (1%)
Query: 527 AFNQAQKQEQQDEQTLQNEEKTFNSEQEGLKQAIQQAQAQQQKQ-QQKQEQQQAQQTY 583
+F +K+E+ E+ +N E+ + + ++ ++ QA+++++ +QKQ+ ++ + Y
Sbjct: 57 SFQDPEKREEYIERLKKNHERKMILQDKQKEEQMRLYQAKKERESRQKQDLKEQMKKY 114
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.311 0.129 0.357
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,755,098
Number of Sequences: 1491
Number of extensions: 143669
Number of successful extensions: 1286
Number of sequences better than 10.0: 88
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 406
Number of HSP's gapped (non-prelim): 318
length of query: 2529
length of database: 494,079
effective HSP length: 94
effective length of query: 2435
effective length of database: 353,925
effective search space: 861807375
effective search space used: 861807375
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (26.6 bits)