BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645540|ref|NP_207716.1| 4-oxalocrotonate
tautomerase (dmpI) [Helicobacter pylori 26695]
(68 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223576.1| putative [Helicobacter pylori J99] 137 3e-35
ref|NP_223102.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobact... 30 0.009
ref|NP_223560.1| putative [Helicobacter pylori J99] 26 0.14
ref|NP_223787.1| putative [Helicobacter pylori J99] 23 1.5
ref|NP_224203.1| ABC transporter, permease [Helicobacter py... 22 2.6
ref|NP_223171.1| DNA GYRASE SUBUNIT B [Helicobacter pylori ... 22 2.6
ref|NP_224021.1| putative [Helicobacter pylori J99] 22 3.3
ref|NP_222775.1| putative [Helicobacter pylori J99] 22 3.3
ref|NP_222992.1| ATP-DEPENDENT ZINC METALLOPEPTIDASE [Helic... 20 7.4
ref|NP_224064.1| putative Outer membrane protein [Helicobac... 20 9.7
ref|NP_223192.1| cag island protein, DNA transfer protein [... 20 9.7
>ref|NP_223576.1| putative [Helicobacter pylori J99]
Length = 68
Score = 137 bits (346), Expect = 3e-35
Identities = 67/68 (98%), Positives = 68/68 (99%)
Query: 1 MPFINIKLVPENGGPTNEQKQQLIEGVSDLMVKVLNKNKASIVVIIDEVDSNNYGLGGES 60
MPFINIKLVPENGGPTNEQKQQLIEGVSDLMVKVLNKNKASIVVIIDEVDSNNYGLGGES
Sbjct: 1 MPFINIKLVPENGGPTNEQKQQLIEGVSDLMVKVLNKNKASIVVIIDEVDSNNYGLGGES 60
Query: 61 VHHLRQKN 68
+HHLRQKN
Sbjct: 61 IHHLRQKN 68
>ref|NP_223102.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 733
Score = 30.0 bits (66), Expect = 0.009
Identities = 13/27 (48%), Positives = 21/27 (77%)
Query: 21 QQLIEGVSDLMVKVLNKNKASIVVIID 47
Q+LIEGVS+ +KVL K A +++I++
Sbjct: 665 QKLIEGVSEEAMKVLQKGIAPVILIVE 691
>ref|NP_223560.1| putative [Helicobacter pylori J99]
Length = 524
Score = 26.2 bits (56), Expect = 0.14
Identities = 17/71 (23%), Positives = 29/71 (39%), Gaps = 4/71 (5%)
Query: 1 MPFINIKLVPENGGPTNEQKQQLIEGVSDLMVKVLNKNKASIVV----IIDEVDSNNYGL 56
MP I P + PT +K++ + +SD K N ++ V D+ N
Sbjct: 325 MPLIGANPPPNDNAPTPLEKEEKTKEISDNKEKAKETNSSAQSVQNTQASDKTSDNKSTT 384
Query: 57 GGESVHHLRQK 67
E++ H Q+
Sbjct: 385 PKETIRHFTQQ 395
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 22.7 bits (47), Expect = 1.5
Identities = 13/41 (31%), Positives = 23/41 (55%), Gaps = 4/41 (9%)
Query: 17 NEQKQQLIEGVSDLMVKVLNKNKASIVVIIDEVDSNNYGLG 57
N++K + +E +K L KN SI I++E+++ G G
Sbjct: 461 NQEKVKKLENE----IKELEKNMVSIKPIVNEINTLLKGYG 497
Score = 21.6 bits (44), Expect = 3.3
Identities = 8/26 (30%), Positives = 17/26 (64%)
Query: 8 LVPENGGPTNEQKQQLIEGVSDLMVK 33
++ EN G ++Q+Q + G+S + +K
Sbjct: 1 MLGENMGNKDKQQQNVSSGISQISLK 26
>ref|NP_224203.1| ABC transporter, permease [Helicobacter pylori J99]
Length = 215
Score = 21.9 bits (45), Expect = 2.6
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 22 QLIEGVSDLMVKVLNKNK 39
Q+I+ D +VK L KNK
Sbjct: 197 QIIQSAGDYVVKRLRKNK 214
>ref|NP_223171.1| DNA GYRASE SUBUNIT B [Helicobacter pylori J99]
Length = 773
Score = 21.9 bits (45), Expect = 2.6
Identities = 9/41 (21%), Positives = 20/41 (47%)
Query: 13 GGPTNEQKQQLIEGVSDLMVKVLNKNKASIVVIIDEVDSNN 53
GG + + ++ + + L K+LN K+ + I+ + N
Sbjct: 427 GGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKN 467
>ref|NP_224021.1| putative [Helicobacter pylori J99]
Length = 410
Score = 21.6 bits (44), Expect = 3.3
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 35 LNKNKASIVVIIDEVDSNNY 54
++KNK + + + DE D+N Y
Sbjct: 149 IDKNKIAYINLNDEKDANYY 168
>ref|NP_222775.1| putative [Helicobacter pylori J99]
Length = 143
Score = 21.6 bits (44), Expect = 3.3
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 16 TNEQKQQLIEGVSDLMVKVLNKNKASIVVIIDEV 49
TNEQ ++ +E VSD V V + +++ +D V
Sbjct: 88 TNEQIEKTLEIVSDSDVDVDFEKLKKLMLNVDSV 121
>ref|NP_222992.1| ATP-DEPENDENT ZINC METALLOPEPTIDASE [Helicobacter pylori J99]
Length = 550
Score = 20.4 bits (41), Expect = 7.4
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 37 KNKASIVVIIDEVDSNNYGLGG 58
K A ++ IDE+D+ GG
Sbjct: 251 KKHAPSIIFIDEIDALGKARGG 272
>ref|NP_224064.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 744
Score = 20.0 bits (40), Expect = 9.7
Identities = 10/36 (27%), Positives = 17/36 (46%)
Query: 1 MPFINIKLVPENGGPTNEQKQQLIEGVSDLMVKVLN 36
M + +++ EN GP + IE V V+V +
Sbjct: 430 MTYQRVRMCEENNGPEERCQGGRIEQVDGKEVQVFD 465
>ref|NP_223192.1| cag island protein, DNA transfer protein [Helicobacter pylori J99]
Length = 330
Score = 20.0 bits (40), Expect = 9.7
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 12 NGGPTNEQKQQLIEGVSDLMVKVLNKN 38
N N + + LIEG DL+ +++ N
Sbjct: 291 NSAARNIKFESLIEGFKDLIDMIVHIN 317
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.312 0.135 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,667
Number of Sequences: 1491
Number of extensions: 2557
Number of successful extensions: 12
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of query: 68
length of database: 494,079
effective HSP length: 44
effective length of query: 24
effective length of database: 428,475
effective search space: 10283400
effective search space used: 10283400
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.9 bits)
S2: 40 (20.0 bits)