BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645544|ref|NP_207720.1| GTP cyclohydrolase I (folE)
[Helicobacter pylori 26695]
(180 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223581.1| GTP CYCLOHYDROLASE I [Helicobacter pylori ... 349 2e-98
ref|NP_223580.1| GTP CYCLOHYDROLASE I [Helicobacter pylori ... 134 1e-33
ref|NP_224026.1| putative [Helicobacter pylori J99] 32 0.013
ref|NP_222773.1| putative [Helicobacter pylori J99] 26 0.55
ref|NP_222895.1| putative [Helicobacter pylori J99] 25 0.94
ref|NP_223728.1| BIOTIN CARBOXYLASE [Helicobacter pylori J99] 24 2.1
ref|NP_223373.1| DNA POLYMERASE III SUBUNITS GAMMA AND TAU ... 23 3.6
ref|NP_222767.1| putative TYPE II DNA MODIFICATION ENZYME (... 23 4.7
ref|NP_223880.1| ALANYL-TRNA SYNTHETASE [Helicobacter pylor... 23 6.1
ref|NP_223887.1| RIBONUCLEASE II FAMILY PROTEIN [Helicobact... 22 7.9
ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helico... 22 7.9
>ref|NP_223581.1| GTP CYCLOHYDROLASE I [Helicobacter pylori J99]
Length = 180
Score = 349 bits (896), Expect = 2e-98
Identities = 174/180 (96%), Positives = 176/180 (97%)
Query: 1 MENFFNQFFESIGEDKNREGLKETPKRVQELWKFLYKGYKEDPRVALKSAYFQGVCDEMI 60
ME FFNQFFE+IGEDKNREGLKETPKRVQELWKFLYKGYKEDPRVALKSAYFQGVCDEMI
Sbjct: 1 MEKFFNQFFENIGEDKNREGLKETPKRVQELWKFLYKGYKEDPRVALKSAYFQGVCDEMI 60
Query: 61 VAQNIEFYSTCEHHLLPFLGNISVGYIPKEKIVGISAIAKLIEIYSRRLQIQERLTIQIA 120
VAQNIEFYSTCEHHLLPF GNISVGYIPKEKIVGISAIAKLIEIYS+RLQIQERLT QIA
Sbjct: 61 VAQNIEFYSTCEHHLLPFFGNISVGYIPKEKIVGISAIAKLIEIYSKRLQIQERLTTQIA 120
Query: 121 ETFDEIIEPRGVIVVCEAKHLCMSMQGVQKQNAIIKTSVLRGLFKKDSKTRAEFMQLLKS 180
ETFDEIIEPRGVIVVCEAKHLCMSMQGVQKQNAIIKTSVLRGLFKKD KTRAEFMQLLKS
Sbjct: 121 ETFDEIIEPRGVIVVCEAKHLCMSMQGVQKQNAIIKTSVLRGLFKKDPKTRAEFMQLLKS 180
>ref|NP_223580.1| GTP CYCLOHYDROLASE I [Helicobacter pylori J99]
Length = 70
Score = 134 bits (337), Expect = 1e-33
Identities = 63/65 (96%), Positives = 64/65 (97%)
Query: 1 MENFFNQFFESIGEDKNREGLKETPKRVQELWKFLYKGYKEDPRVALKSAYFQGVCDEMI 60
ME FFNQFFE+IGEDKNREGLKETPKRVQELWKFLYKGYKEDPRVALKSAYFQGVCDEMI
Sbjct: 1 MEKFFNQFFENIGEDKNREGLKETPKRVQELWKFLYKGYKEDPRVALKSAYFQGVCDEMI 60
Query: 61 VAQNI 65
VAQNI
Sbjct: 61 VAQNI 65
>ref|NP_224026.1| putative [Helicobacter pylori J99]
Length = 148
Score = 31.6 bits (70), Expect = 0.013
Identities = 20/74 (27%), Positives = 32/74 (43%)
Query: 57 DEMIVAQNIEFYSTCEHHLLPFLGNISVGYIPKEKIVGISAIAKLIEIYSRRLQIQERLT 116
D +I + EF S C P G I + YIPK+K+V ++ + Y E
Sbjct: 36 DPLITLECKEFTSLCPITSQPDFGVIFIRYIPKDKMVESKSLKLYLFSYRNHGSFHESCI 95
Query: 117 IQIAETFDEIIEPR 130
I +++EP+
Sbjct: 96 NTILLDLVQLLEPK 109
>ref|NP_222773.1| putative [Helicobacter pylori J99]
Length = 120
Score = 26.2 bits (56), Expect = 0.55
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 8/66 (12%)
Query: 1 MENFFNQFFESIGEDKNREGLKETPKRVQELWKFLYKGYKEDPRVALK--SAYFQGVCDE 58
+E+F+NQ + +G+ ++ +G +++ EL+ L++ K+ LK SAY C +
Sbjct: 33 LESFYNQASQELGDKRSDKG-----EKLAELFDLLFEYIKDSKFERLKEPSAYDYS-CKK 86
Query: 59 MIVAQN 64
+ QN
Sbjct: 87 LYPEQN 92
>ref|NP_222895.1| putative [Helicobacter pylori J99]
Length = 567
Score = 25.4 bits (54), Expect = 0.94
Identities = 15/52 (28%), Positives = 23/52 (43%)
Query: 19 EGLKETPKRVQELWKFLYKGYKEDPRVALKSAYFQGVCDEMIVAQNIEFYST 70
+G + T L + K Y+ED R K Y +G + +QN F+ T
Sbjct: 71 DGQQRTTTIFMLLHVLVSKQYEEDKRETRKYLYQKGELKLEVASQNQSFFKT 122
>ref|NP_223728.1| BIOTIN CARBOXYLASE [Helicobacter pylori J99]
Length = 455
Score = 24.3 bits (51), Expect = 2.1
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 61 VAQNIEFYSTCEHHLLPFLG 80
+++N F C HH L F+G
Sbjct: 96 LSENQNFVEICSHHSLEFIG 115
>ref|NP_223373.1| DNA POLYMERASE III SUBUNITS GAMMA AND TAU [Helicobacter pylori J99]
Length = 582
Score = 23.5 bits (49), Expect = 3.6
Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 9 FESIGEDKNREGLKETPKRVQELWKFLYKGYKEDPRVALK 48
+ES+ DK++E L+E K V+ + ++ G E+ ++ALK
Sbjct: 440 WESLATDKDKELLRERFKIVKSIVDGVF-GKGENIKIALK 478
>ref|NP_222767.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 343
Score = 23.1 bits (48), Expect = 4.7
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 21 LKETPKRVQELWKFLYKGYKEDP 43
L++ KRVQ++W+F Y P
Sbjct: 242 LEQVGKRVQDIWEFKDPQYPSYP 264
>ref|NP_223880.1| ALANYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 847
Score = 22.7 bits (47), Expect = 6.1
Identities = 19/62 (30%), Positives = 28/62 (44%), Gaps = 6/62 (9%)
Query: 68 YSTCEHHLLPFLGNISVGYIPKEKIVGISAIAKLIEIYSRRLQIQER-LTIQIAETFDEI 126
Y+ H L LGN S G KE+ AI E ++ L + + L I + E DE
Sbjct: 78 YTARHHTLFEMLGNFSFGDYFKEE-----AILFAWEFVTKNLGFKPKDLYISVHEKDDEA 132
Query: 127 IE 128
++
Sbjct: 133 VK 134
>ref|NP_223887.1| RIBONUCLEASE II FAMILY PROTEIN [Helicobacter pylori J99]
Length = 644
Score = 22.3 bits (46), Expect = 7.9
Identities = 10/40 (25%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 137 EAKHLCMSMQGVQKQNAIIKTSVLRGLFKKDSKTRAEFMQ 176
E LC + +QK+ A+I+ ++ +K ++ EF++
Sbjct: 541 ETPELCAELNALQKKAALIERDFIK---RKFARLALEFLE 577
>ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helicobacter pylori J99]
Length = 949
Score = 22.3 bits (46), Expect = 7.9
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 18 REGLKETPKRVQELWKFLYKGYKE 41
+ K TP++ +L+K++ G KE
Sbjct: 36 KTNFKMTPEQAGKLYKYIVDGIKE 59
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.322 0.139 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 188,075
Number of Sequences: 1491
Number of extensions: 7835
Number of successful extensions: 29
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 22
Number of HSP's gapped (non-prelim): 11
length of query: 180
length of database: 494,079
effective HSP length: 72
effective length of query: 108
effective length of database: 386,727
effective search space: 41766516
effective search space used: 41766516
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)