BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644724|ref|NP_206894.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(155 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222807.1| putative ALPHA(1,2)FUCOSYLTRANSFERASE [Hel... 265 4e-73
ref|NP_223780.1| putative ATP synthase F1, subunit delta [H... 25 0.74
ref|NP_223063.1| putative [Helicobacter pylori J99] 23 2.8
ref|NP_223990.1| putative [Helicobacter pylori J99] 23 4.8
ref|NP_223252.1| putative [Helicobacter pylori J99] 23 4.8
ref|NP_222773.1| putative [Helicobacter pylori J99] 23 4.8
ref|NP_224124.1| L-SERYL-TRNA(SER) SELENIUM TRANSFERASE [He... 22 6.3
ref|NP_223497.1| PANTOTHENATE METABOLISM FLAVOPROTEIN [Heli... 22 6.3
ref|NP_223848.1| putative [Helicobacter pylori J99] 22 8.2
ref|NP_223164.1| UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE L... 22 8.2
>ref|NP_222807.1| putative ALPHA(1,2)FUCOSYLTRANSFERASE [Helicobacter pylori J99]
Length = 299
Score = 265 bits (677), Expect = 4e-73
Identities = 131/136 (96%), Positives = 133/136 (97%)
Query: 1 MAFKVVQICGGLGNQMFQYAFAKSLQKHSNTPVLLDITSFDWSDRKMQLELFPIDLPYAS 60
MAFKVVQICGGLGNQMFQYAFAKSLQKHSNTPVLLDITSFD S+RKMQLELFPIDLPYAS
Sbjct: 1 MAFKVVQICGGLGNQMFQYAFAKSLQKHSNTPVLLDITSFDGSNRKMQLELFPIDLPYAS 60
Query: 61 AKEIAIAKMQHLPKLVRDALKCMGFDRVSQEIVFEYEPKLLKPSRLTYFFGYFQDPRYFD 120
AKEIAIAKMQHLPKLVRDALK MGFDRVSQEIVFEYEPKLLKPSRLTYF+GYFQDPRYFD
Sbjct: 61 AKEIAIAKMQHLPKLVRDALKYMGFDRVSQEIVFEYEPKLLKPSRLTYFYGYFQDPRYFD 120
Query: 121 AISPLIKQTFTLPPPP 136
AIS LIKQTFTLPPPP
Sbjct: 121 AISSLIKQTFTLPPPP 136
>ref|NP_223780.1| putative ATP synthase F1, subunit delta [Helicobacter pylori J99]
Length = 180
Score = 25.4 bits (54), Expect = 0.74
Identities = 14/48 (29%), Positives = 24/48 (49%), Gaps = 2/48 (4%)
Query: 23 KSLQKHSNTPVLLDITSFDWSDRKMQLELFPIDLPYASAKEIAIAKMQ 70
+ LQ N PV +I WS + + L + +DL +KE + K++
Sbjct: 128 QKLQARFNAPV--EIAQDTWSKKGVSLSVSSLDLEIGFSKEDILKKIE 173
>ref|NP_223063.1| putative [Helicobacter pylori J99]
Length = 207
Score = 23.5 bits (49), Expect = 2.8
Identities = 26/129 (20%), Positives = 54/129 (41%), Gaps = 15/129 (11%)
Query: 33 VLLDITSFDWSDRKMQLELFPIDLPYASAKEIAIAKMQHLPKLVRDALKCMGFDRVSQEI 92
+LL F+ + ++ + +P + P +A + K+ V + ++Q+I
Sbjct: 12 ILLGCQFFNKTTLHLKYKDYPKNSPLKTASTLTPPKIFFNAHFVPPFYQKEFKKALAQQI 71
Query: 93 VFEYEPKLLKPSRLTY------FFGYFQDPRYFDAISPLIKQTFTLPPPPPKIIRIIIKK 146
+ + K S LT+ FF + + P+ AI +K+T P ++R +
Sbjct: 72 AYFLKDK----SALTFNISGNVFFSFEESPKDLKAIKERLKKTIEPNTDPKAVMRFL--- 124
Query: 147 RKNISASFL 155
N+ AS +
Sbjct: 125 --NLQASLI 131
>ref|NP_223990.1| putative [Helicobacter pylori J99]
Length = 1164
Score = 22.7 bits (47), Expect = 4.8
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 132 LPPPPPKIIRIIIKKRKNIS 151
LPPPPP + + RKN++
Sbjct: 790 LPPPPPTNPKTPNQTRKNVA 809
Score = 21.9 bits (45), Expect = 8.2
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 125 LIKQTFTLPPPPPKIIRI 142
LI++ PPPPP ++ I
Sbjct: 1058 LIQEILQNPPPPPHLMPI 1075
>ref|NP_223252.1| putative [Helicobacter pylori J99]
Length = 978
Score = 22.7 bits (47), Expect = 4.8
Identities = 18/91 (19%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
Query: 21 FAKSLQKHSNTPVL--LDITSFDWSDRKMQLELFPID-LPYASAKEIAIAKMQHLPKLVR 77
F + QK+ T + + SF + ++ P + +P + A + +
Sbjct: 219 FQRQSQKNLKTWIFDKIQFASFKIDNALIKANFTPSEFIPSLLENSVVKATLIKPSVVFN 278
Query: 78 DALKCMGFDRVSQEIVFEYEPKLLKPSRLTY 108
D L + D+ E++F+ + L++P ++TY
Sbjct: 279 DGLSPIKMDKT--ELIFKNKQLLIQPQKITY 307
>ref|NP_222773.1| putative [Helicobacter pylori J99]
Length = 120
Score = 22.7 bits (47), Expect = 4.8
Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Query: 29 SNTPVLLDITSFDWSDRKMQLELF--PIDLPYASAKEIAIAKMQHLPKLVRDALKCMGFD 86
+ T +D+ + SD K LE F + K+ L L+ + +K F+
Sbjct: 13 ATTHSAMDLIASVLSDSKYYLESFYNQASQELGDKRSDKGEKLAELFDLLFEYIKDSKFE 72
Query: 87 RVSQEIVFEYEPKLLKPSRLT 107
R+ + ++Y K L P + T
Sbjct: 73 RLKEPSAYDYSCKKLYPEQNT 93
>ref|NP_224124.1| L-SERYL-TRNA(SER) SELENIUM TRANSFERASE [Helicobacter pylori J99]
Length = 390
Score = 22.3 bits (46), Expect = 6.3
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 113 FQDPRYFDAISPLIKQTFTLP 133
F P++++ I P +K+ T P
Sbjct: 40 FFSPQFYEKIEPYLKEVLTHP 60
>ref|NP_223497.1| PANTOTHENATE METABOLISM FLAVOPROTEIN [Helicobacter pylori J99]
Length = 425
Score = 22.3 bits (46), Expect = 6.3
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 9/37 (24%)
Query: 22 AKSLQKHSNTPVLLDI---------TSFDWSDRKMQL 49
AK+LQKH+ P+L ++ TSF+ +K +L
Sbjct: 281 AKNLQKHALKPLLFNLAAISDYLPKTSFNHKLKKSEL 317
>ref|NP_223848.1| putative [Helicobacter pylori J99]
Length = 222
Score = 21.9 bits (45), Expect = 8.2
Identities = 12/28 (42%), Positives = 14/28 (49%)
Query: 119 FDAISPLIKQTFTLPPPPPKIIRIIIKK 146
F I+ K PP PKII II+K
Sbjct: 131 FLGITKYFKSVEGSPPDKPKIIANIIQK 158
>ref|NP_223164.1| UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE [Helicobacter
pylori J99]
Length = 422
Score = 21.9 bits (45), Expect = 8.2
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 16 MFQYAFAKSLQKHSNTPVLLDIT 38
M +Y + SL HS TP ++ I+
Sbjct: 79 MSEYDYIDSLFDHSFTPTMISIS 101
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.326 0.142 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 152,475
Number of Sequences: 1491
Number of extensions: 6137
Number of successful extensions: 31
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 12
length of query: 155
length of database: 494,079
effective HSP length: 70
effective length of query: 85
effective length of database: 389,709
effective search space: 33125265
effective search space used: 33125265
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)