BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645547|ref|NP_207723.1| hypothetical protein
[Helicobacter pylori 26695]
(146 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223584.1| putative [Helicobacter pylori J99] 270 9e-75
ref|NP_223331.1| putative [Helicobacter pylori J99] 25 1.1
ref|NP_223708.1| THIOL PEROXIDASE [Helicobacter pylori J99] 24 1.5
ref|NP_223808.1| putative THIOREDOXIN REDUCTASE [Helicobact... 24 1.9
ref|NP_223862.1| putative [Helicobacter pylori J99] 23 3.3
ref|NP_223407.1| putative FLAGELLAR HOOK-ASSOCIATED PROTEIN... 23 4.3
ref|NP_223417.1| putative [Helicobacter pylori J99] 22 5.6
ref|NP_223268.1| putative [Helicobacter pylori J99] 22 5.6
ref|NP_222944.1| PROLYL-TRNA SYNTHETASE [Helicobacter pylor... 22 5.6
ref|NP_222797.1| methyl-accepting chemotaxis protein (MCP) ... 22 7.4
ref|NP_224064.1| putative Outer membrane protein [Helicobac... 22 9.6
>ref|NP_223584.1| putative [Helicobacter pylori J99]
Length = 219
Score = 270 bits (691), Expect = 9e-75
Identities = 129/132 (97%), Positives = 131/132 (98%)
Query: 1 MSKKHRLAFLGLIVGVLFFFSACEHRLHMGYYSEVTGDYLFNYNSTIVVAYDRSDAMTSY 60
M+KKHRLAFLGLIVGVLFFFSAC+HRLHMGYYSEVTGDYLFNYNSTIVVAYDRSDAMTSY
Sbjct: 1 MNKKHRLAFLGLIVGVLFFFSACQHRLHMGYYSEVTGDYLFNYNSTIVVAYDRSDAMTSY 60
Query: 61 YINVIVYELQKLGFYNVFTQAEFPLDKAKNVIYARIVRNISAVPFYQYNYQLIDQVNKPC 120
YINVIVYELQKLGFYNVFTQAEFPLDKAKNVIY RIVRNISAVPFYQYNYQLIDQVNKPC
Sbjct: 61 YINVIVYELQKLGFYNVFTQAEFPLDKAKNVIYVRIVRNISAVPFYQYNYQLIDQVNKPC 120
Query: 121 YFLGGQFYCSQT 132
YFLGGQFYCSQT
Sbjct: 121 YFLGGQFYCSQT 132
>ref|NP_223331.1| putative [Helicobacter pylori J99]
Length = 1167
Score = 24.6 bits (52), Expect = 1.1
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 96 IVRNISAVPFYQYNYQLIDQV-----NKPCYFLGGQFYCSQTLRIITLSM 140
+V SA+ + YQ+ N P ++ GG++ R+ITLS+
Sbjct: 1103 VVNGKSAIDWVIERYQITKDKDSLIENNPNHYAGGKYIFELLCRVITLSV 1152
>ref|NP_223708.1| THIOL PEROXIDASE [Helicobacter pylori J99]
Length = 166
Score = 24.3 bits (51), Expect = 1.5
Identities = 14/39 (35%), Positives = 19/39 (47%)
Query: 69 LQKLGFYNVFTQAEFPLDKAKNVIYARIVRNISAVPFYQ 107
L K + ++ F LD VIY IV+NI P Y+
Sbjct: 121 LGKGSLQGLLARSVFVLDDKGVVIYKEIVQNILEEPNYE 159
>ref|NP_223808.1| putative THIOREDOXIN REDUCTASE [Helicobacter pylori J99]
Length = 324
Score = 23.9 bits (50), Expect = 1.9
Identities = 17/75 (22%), Positives = 34/75 (44%), Gaps = 13/75 (17%)
Query: 24 EHRLHMGYYSEVTG----DYLFNYNSTIVVAYDRSDAMTSYYINVIVYELQKLGFYNVFT 79
EHR+ Y +++ LF +T + T+Y+ +V + K+G N T
Sbjct: 90 EHRITPSYKTDIESVKKEGELFKITTT---------SNTTYHAKFVVVAIGKMGQPNRPT 140
Query: 80 QAEFPLDKAKNVIYA 94
+ P+ +K V+++
Sbjct: 141 TYKIPVALSKQVVFS 155
>ref|NP_223862.1| putative [Helicobacter pylori J99]
Length = 112
Score = 23.1 bits (48), Expect = 3.3
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 58 TSYYINVIVYELQKLGFYNVF 78
T YY+ VY+ +K GF V+
Sbjct: 82 TPYYLEGNVYDFEKYGFRMVY 102
>ref|NP_223407.1| putative FLAGELLAR HOOK-ASSOCIATED PROTEIN 2 (HAP2) [Helicobacter
pylori J99]
Length = 685
Score = 22.7 bits (47), Expect = 4.3
Identities = 13/45 (28%), Positives = 19/45 (41%)
Query: 4 KHRLAFLGLIVGVLFFFSACEHRLHMGYYSEVTGDYLFNYNSTIV 48
K L LGL G++ + A + L M + D F YN +
Sbjct: 401 KASLKDLGLSAGMVQSYEASQDTLFMSKNLQKASDSQFTYNGVSI 445
>ref|NP_223417.1| putative [Helicobacter pylori J99]
Length = 185
Score = 22.3 bits (46), Expect = 5.6
Identities = 10/23 (43%), Positives = 15/23 (64%)
Query: 3 KKHRLAFLGLIVGVLFFFSACEH 25
K + L F+ L+ VL FSAC++
Sbjct: 4 KAYFLRFIALVFIVLLGFSACKN 26
>ref|NP_223268.1| putative [Helicobacter pylori J99]
Length = 205
Score = 22.3 bits (46), Expect = 5.6
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 11 GLIVGVLFFFSACEHRLHMGYYSEVTG----DYLFNYNSTI 47
GL+ GV F ++ +GY ++ G Y FN S +
Sbjct: 105 GLVAGVRLFKGWVIPKIALGYQLQILGAKIDKYQFNIQSAV 145
>ref|NP_222944.1| PROLYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 576
Score = 22.3 bits (46), Expect = 5.6
Identities = 10/24 (41%), Positives = 14/24 (57%)
Query: 73 GFYNVFTQAEFPLDKAKNVIYARI 96
G YN A+ LDK +NV + R+
Sbjct: 38 GIYNFLPLAKKVLDKIENVTHKRM 61
>ref|NP_222797.1| methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
Length = 673
Score = 21.9 bits (45), Expect = 7.4
Identities = 9/45 (20%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 31 YYSEVTGDYLFNYNSTIVVAYDRSDAM--TSYYINVIVYELQKLG 73
YY EV GD ++ + T+ + + + ++++N+ + +G
Sbjct: 151 YYKEVNGDKIYGMDITLPLMGKNQNVIGALNFFLNIDAFYTDVVG 195
>ref|NP_224064.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 744
Score = 21.6 bits (44), Expect = 9.6
Identities = 15/66 (22%), Positives = 27/66 (40%)
Query: 35 VTGDYLFNYNSTIVVAYDRSDAMTSYYINVIVYELQKLGFYNVFTQAEFPLDKAKNVIYA 94
+T ++ N V AY++ A + Y N + +Q YN+ D NV+
Sbjct: 97 ITNLTFYSQNPVYVTAYNQESAEEAGYGNNSLIMIQNFLPYNLNNIELSYTDDQGNVVSL 156
Query: 95 RIVRNI 100
++ I
Sbjct: 157 GVIETI 162
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.329 0.142 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 151,549
Number of Sequences: 1491
Number of extensions: 6414
Number of successful extensions: 25
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 11
length of query: 146
length of database: 494,079
effective HSP length: 70
effective length of query: 76
effective length of database: 389,709
effective search space: 29617884
effective search space used: 29617884
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 44 (21.6 bits)