BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645548|ref|NP_207724.1| hypothetical protein
[Helicobacter pylori 26695]
(100 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223584.1| putative [Helicobacter pylori J99] 186 8e-50
ref|NP_222965.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 25 0.55
ref|NP_224128.1| TYPE III RESTRICTION ENZYME [Helicobacter ... 23 1.6
ref|NP_223274.1| putative vacuolating cytotoxin (VacA) para... 23 1.6
ref|NP_223038.1| putative [Helicobacter pylori J99] 23 2.1
ref|NP_223339.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 ALP... 22 3.6
ref|NP_223437.1| putative Outer membrane protein [Helicobac... 22 4.7
ref|NP_222897.1| putative cardiolipin synthase [Helicobacte... 22 4.7
ref|NP_224142.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUB... 21 6.1
ref|NP_223163.1| PHOSPHO-N-ACETYLMURAMOYL-PENTAPEPTIDE-TRAN... 21 6.1
ref|NP_223507.1| putative abc transporter, ATP-binding prot... 21 7.9
>ref|NP_223584.1| putative [Helicobacter pylori J99]
Length = 219
Score = 186 bits (473), Expect = 8e-50
Identities = 89/98 (90%), Positives = 89/98 (90%)
Query: 3 FSWGAVLLLSNPTDYYAINGFSEQILMSANSHFILDWYDVVLQKRVLYVDGSVSGRTCGY 62
F G PTDYYAINGFSEQILMSANSHFILDWYDVVLQKRVLYVDGSVSGRTCGY
Sbjct: 122 FLGGQFYCSQTPTDYYAINGFSEQILMSANSHFILDWYDVVLQKRVLYVDGSVSGRTCGY 181
Query: 63 QMLYRDLIKSTIKRIDFNRPERYYYNLRLPLYQPCYRQ 100
QMLYRDLIKSTIKRIDFNRPERYYYNLRLPLYQPCYRQ
Sbjct: 182 QMLYRDLIKSTIKRIDFNRPERYYYNLRLPLYQPCYRQ 219
>ref|NP_222965.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 390
Score = 24.6 bits (52), Expect = 0.55
Identities = 13/44 (29%), Positives = 23/44 (51%), Gaps = 5/44 (11%)
Query: 8 VLLLSNPTD-----YYAINGFSEQILMSANSHFILDWYDVVLQK 46
+LL S P D ++A +G + Q ++ N + L+W + QK
Sbjct: 297 LLLCSTPKDSIILDFFAGSGTTAQAVIEVNKDYYLNWSFYLCQK 340
>ref|NP_224128.1| TYPE III RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 969
Score = 23.1 bits (48), Expect = 1.6
Identities = 11/34 (32%), Positives = 15/34 (43%)
Query: 62 YQMLYRDLIKSTIKRIDFNRPERYYYNLRLPLYQ 95
YQ RD I K ID PE + P+++
Sbjct: 10 YQEQCRDQILGVFKGIDLREPENDIQRIANPVFE 43
>ref|NP_223274.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 3194
Score = 23.1 bits (48), Expect = 1.6
Identities = 23/89 (25%), Positives = 37/89 (40%), Gaps = 12/89 (13%)
Query: 11 LSNPTDYYAINGFSEQILMSANSHFILDW--------YDVVLQKRVLYVDGS---VSGRT 59
L+NPT IN +MS N+ ++++ Y ++ R++Y + + G
Sbjct: 2650 LNNPTHQTIINVTGTSTIMSYNNQALINFNTQLKQGAYTLINANRMVYGYDNQTILGGSL 2709
Query: 60 CGYQMLYRDLIKSTIKRIDFNRPERYYYN 88
Y LY LI KR+ N Y N
Sbjct: 2710 SDYLKLY-TLIDFNGKRMQLNGDSLSYDN 2737
Score = 20.8 bits (42), Expect = 7.9
Identities = 9/27 (33%), Positives = 13/27 (47%)
Query: 68 DLIKSTIKRIDFNRPERYYYNLRLPLY 94
D K ++ IDF R+Y+N Y
Sbjct: 3086 DPSKKSVLTIDFALENRHYFNTNSYFY 3112
>ref|NP_223038.1| putative [Helicobacter pylori J99]
Length = 112
Score = 22.7 bits (47), Expect = 2.1
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 46 KRVLYVDGSVSGRTCGYQMLYRDLIKSTIKRIDFNRPE 83
KR L+ + S R +++ + LIK ++ DFN E
Sbjct: 30 KRALFKEKSQKIREQAVKIVEKRLIKENMQLSDFNEEE 67
>ref|NP_223339.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 ALPHA CHAIN [Helicobacter
pylori J99]
Length = 788
Score = 21.9 bits (45), Expect = 3.6
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 65 LYRDLIKSTIKRIDFNRPERYYYNLRLPLY 94
+ + LIK+ + +ID + P + RL LY
Sbjct: 55 IQQTLIKTAVDKIDIDTPNWSFVASRLFLY 84
>ref|NP_223437.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 455
Score = 21.6 bits (44), Expect = 4.7
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 5 WGAVLLLSNPTDYYAINGFSEQILMSANSHFILDWY 40
WGA LL+ DY N N++ + WY
Sbjct: 301 WGASLLIHQRFDYNEFNFGFGYYQNFGNANARIGWY 336
>ref|NP_222897.1| putative cardiolipin synthase [Helicobacter pylori J99]
Length = 502
Score = 21.6 bits (44), Expect = 4.7
Identities = 10/44 (22%), Positives = 23/44 (51%), Gaps = 7/44 (15%)
Query: 7 AVLLLSNPTDYYAINGFSEQILMSANSHFILDWYDVVLQKRVLY 50
+ +L NP+ F++++ +S H W+ V+ + RV++
Sbjct: 430 SAVLFDNPS-------FAKRVRLSLKDHAQQSWHLVLYRHRVIW 466
>ref|NP_224142.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUBUNIT) [Helicobacter
pylori J99]
Length = 991
Score = 21.2 bits (43), Expect = 6.1
Identities = 9/25 (36%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Query: 20 INGFSEQILMSANS--HFILDWYDV 42
I G +I ++ N+ H+++DW DV
Sbjct: 81 IYGVKTKISLNENTQTHWLIDWKDV 105
>ref|NP_223163.1| PHOSPHO-N-ACETYLMURAMOYL-PENTAPEPTIDE-TRANSFERASE [Helicobacter
pylori J99]
Length = 353
Score = 21.2 bits (43), Expect = 6.1
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 17 YYAINGFSEQILMSANSHFILDWYDVVLQ 45
Y AI +E +L+ S F+++ V+LQ
Sbjct: 272 YNAIVSHNEILLVLMGSIFVIETLSVILQ 300
>ref|NP_223507.1| putative abc transporter, ATP-binding protein [Helicobacter pylori
J99]
Length = 533
Score = 20.8 bits (42), Expect = 7.9
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 40 YDVVLQKRVLYVDGSVS 56
YD + +K LY +G +S
Sbjct: 93 YDAIKEKERLYTEGDLS 109
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.327 0.143 0.453
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,674
Number of Sequences: 1491
Number of extensions: 3667
Number of successful extensions: 17
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 12
length of query: 100
length of database: 494,079
effective HSP length: 64
effective length of query: 36
effective length of database: 398,655
effective search space: 14351580
effective search space used: 14351580
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 42 (20.8 bits)