BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645549|ref|NP_207725.1| hypothetical protein
[Helicobacter pylori 26695]
(200 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223585.1| putative [Helicobacter pylori J99] 408 e-116
ref|NP_223184.1| GTP-binding protein [Helicobacter pylori J99] 29 0.076
ref|NP_223893.1| putative [Helicobacter pylori J99] 28 0.13
ref|NP_222783.1| putative [Helicobacter pylori J99] 28 0.17
ref|NP_223243.1| putative [Helicobacter pylori J99] 25 1.9
ref|NP_222759.1| phosphomannose isomerase/GDP-mannose pyrop... 25 1.9
ref|NP_224030.1| putative [Helicobacter pylori J99] 24 2.4
ref|NP_223925.1| putative TRANSCRIPTIONAL REGULATOR [Helico... 23 4.2
ref|NP_224090.1| putative [Helicobacter pylori J99] 23 5.4
ref|NP_223684.1| METHIONYL-TRNA SYNTHETASE [Helicobacter py... 23 5.4
ref|NP_224134.1| putative [Helicobacter pylori J99] 23 7.1
ref|NP_223450.1| putative Outer membrane protein [Helicobac... 23 7.1
ref|NP_222879.1| MOLYBDOPTERIN BIOSYNTHESIS PROTEIN [Helico... 23 7.1
ref|NP_223787.1| putative [Helicobacter pylori J99] 22 9.3
>ref|NP_223585.1| putative [Helicobacter pylori J99]
Length = 200
Score = 408 bits (1048), Expect = e-116
Identities = 193/200 (96%), Positives = 198/200 (98%)
Query: 1 MVIRRLYQFCASHVVRNCSSLKCAQNIHGHNYEVEVFIETNRLDNANMALDFGLMQQEMQ 60
MVIRRLY+FCASHVVRNCSSLKCAQNIHGHNYEVEVFIETNRLDNANMALDFGLMQQEMQ
Sbjct: 1 MVIRRLYKFCASHVVRNCSSLKCAQNIHGHNYEVEVFIETNRLDNANMALDFGLMQQEMQ 60
Query: 61 VFIESFDHAHHFWDKESLEFQRFIENHCVRYVKCSFNLSAESYALMFLYYLTKILQKSVF 120
FI+SFDHAHHFWDKES EFQRFIENHCVRYVKCSFNLSAESYALMFLYYLTKILQKSVF
Sbjct: 61 TFIDSFDHAHHFWDKESPEFQRFIENHCVRYVKCSFNLSAESYALMFLYYLTKILQKSVF 120
Query: 121 SNDEGELKVSSVRVHETKNGYAESFLKDLENPHFKSLVHDHCVSFSQGIQNLWHDKDFFN 180
SN+EGELKVSSVRVHETKNGYAESFLKDLENPHFKSLVHDHCVSFSQGIQ+LWHDKDFF+
Sbjct: 121 SNNEGELKVSSVRVHETKNGYAESFLKDLENPHFKSLVHDHCVSFSQGIQSLWHDKDFFH 180
Query: 181 KIISDEKQCFFHAKPLHQIP 200
KIISDEKQCFFHAKPLHQIP
Sbjct: 181 KIISDEKQCFFHAKPLHQIP 200
>ref|NP_223184.1| GTP-binding protein [Helicobacter pylori J99]
Length = 301
Score = 29.3 bits (64), Expect = 0.076
Identities = 20/82 (24%), Positives = 38/82 (45%), Gaps = 6/82 (7%)
Query: 108 LYYLTKILQKSVFSN-----DEGELKVSSVRVHETKNGYAESFLKDLENPHFKSLVHDHC 162
L++ K+L + + S + EL+V VH+ GY E FL + PH +L
Sbjct: 68 LHHQEKLLNQCMLSQALKAMGDAELRVFLASVHDDLKGY-EEFLSLCQKPHILALSKIDT 126
Query: 163 VSFSQGIQNLWHDKDFFNKIIS 184
+ Q +Q L + + ++ ++
Sbjct: 127 ATHKQVLQKLQEYQKYSSQFLA 148
>ref|NP_223893.1| putative [Helicobacter pylori J99]
Length = 245
Score = 28.5 bits (62), Expect = 0.13
Identities = 36/136 (26%), Positives = 59/136 (42%), Gaps = 15/136 (11%)
Query: 41 NRLDNANMALD-FGLMQQEMQVFIESFDHAHHFWDKESLEFQRFIENHCVRYVKCSFNLS 99
N L+ N+ ++ F + M + H+ + K SLE F E +V C ++L
Sbjct: 62 NALEQQNIVIENFIALDNSMNMLKLHPTHSINI-QKISLEHANFEE-----HVFCDYDLV 115
Query: 100 AESYALMFLYYLTKILQKSVFSNDEGELKV----SSVRVHETKNGYAESFLKDLENPHFK 155
S +L + L +L+K S+ E L + S VHE S L+DL+ K
Sbjct: 116 VSSSSLQWARDLKSVLEKIALSSKEAALAIHTDFSLHEVHEFLG--TPSPLRDLKT--LK 171
Query: 156 SLVHDHCVSFSQGIQN 171
SL+ + F ++N
Sbjct: 172 SLIKNAFKHFQIELEN 187
>ref|NP_222783.1| putative [Helicobacter pylori J99]
Length = 806
Score = 28.1 bits (61), Expect = 0.17
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 9/80 (11%)
Query: 58 EMQVFIESFDHAHHFWDKESLEFQRFIENHCVRYVKCSFNLSAESYALMFLYYLTKILQK 117
E+Q+F+ + KE +EF ++ + + + + S+ SY + FL +L +QK
Sbjct: 375 EVQLFLLDY--------KEGVEFNAYVADPALEHARLVSVASSISYGITFLKWLCDEMQK 426
Query: 118 SVFSNDEGELK-VSSVRVHE 136
+ +K +S R HE
Sbjct: 427 RADRFKQFNVKDLSDYRKHE 446
Score = 22.3 bits (46), Expect = 9.3
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 111 LTKILQKSVFSNDEGELKVSSVRVHETKNGYAESFLKDLENPHFKSLVHDHCVSFSQGIQ 170
L L+K++ ++E + + + K Y LK+L N HFK C++F +
Sbjct: 719 LKSFLEKAI--DNEQYCVIFAHDFRQIKTNYHFDKLKELLNNHFK-----QCLAFRCNGE 771
Query: 171 NL 172
NL
Sbjct: 772 NL 773
>ref|NP_223243.1| putative [Helicobacter pylori J99]
Length = 678
Score = 24.6 bits (52), Expect = 1.9
Identities = 14/68 (20%), Positives = 32/68 (46%), Gaps = 1/68 (1%)
Query: 26 NIHGHNYEVEVFIETNRLDNANMALDFGLMQQEMQVFIESFDHAHHFWDKESLEFQRFIE 85
N H + + + + + + N N+ FG+ +++Q F+E + + D SL + +
Sbjct: 452 NPHEKTFSMVMTLSNHAIKNVNLKA-FGVPLEKIQQFVEKTPKSENLPDANSLGHIYWYD 510
Query: 86 NHCVRYVK 93
V ++K
Sbjct: 511 KVVVDFIK 518
>ref|NP_222759.1| phosphomannose isomerase/GDP-mannose pyrophosphorylase
[Helicobacter pylori J99]
Length = 470
Score = 24.6 bits (52), Expect = 1.9
Identities = 12/52 (23%), Positives = 26/52 (49%), Gaps = 1/52 (1%)
Query: 11 ASHVVRNCS-SLKCAQNIHGHNYEVEVFIETNRLDNANMALDFGLMQQEMQV 61
A +++ C + + +N H ++ E + D +M++D LMQQ ++
Sbjct: 204 APTILKGCERAFESLENTHFFEQKIARLSEKSMQDLEDMSIDIALMQQSHKI 255
>ref|NP_224030.1| putative [Helicobacter pylori J99]
Length = 553
Score = 24.3 bits (51), Expect = 2.4
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 168 GIQNLWHDKDFFNKIISDEKQCFFHAKPLH 197
GI NL+ DKD +SD Q F + P +
Sbjct: 434 GIFNLFKDKDAIVFYLSDHAQDIFESGPTY 463
>ref|NP_223925.1| putative TRANSCRIPTIONAL REGULATOR [Helicobacter pylori J99]
Length = 217
Score = 23.5 bits (49), Expect = 4.2
Identities = 9/34 (26%), Positives = 20/34 (58%)
Query: 41 NRLDNANMALDFGLMQQEMQVFIESFDHAHHFWD 74
N LD+ +A +++ ++FI + ++ + FWD
Sbjct: 179 NLLDSLALASSKQEIEKLKEIFIATSEYEYQFWD 212
>ref|NP_224090.1| putative [Helicobacter pylori J99]
Length = 841
Score = 23.1 bits (48), Expect = 5.4
Identities = 9/40 (22%), Positives = 19/40 (47%)
Query: 33 EVEVFIETNRLDNANMALDFGLMQQEMQVFIESFDHAHHF 72
E + + + NA L GL+Q + + ++ +H H+
Sbjct: 292 ETNAYKQLQKSANAQDELALGLLQARLGHYKQALEHLQHY 331
>ref|NP_223684.1| METHIONYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 656
Score = 23.1 bits (48), Expect = 5.4
Identities = 15/52 (28%), Positives = 26/52 (49%), Gaps = 9/52 (17%)
Query: 147 KDLENPHFKSLVHDHCVSF------SQGIQNLWHDKDFFNKIISDEKQCFFH 192
K+LE H + D+ SF + ++ L++ DF NK+I+ E+ H
Sbjct: 387 KELEKAH---QILDNANSFVPKMQLHKALEELFNIYDFLNKLIAKEEPWVLH 435
>ref|NP_224134.1| putative [Helicobacter pylori J99]
Length = 479
Score = 22.7 bits (47), Expect = 7.1
Identities = 10/35 (28%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 55 MQQEMQVFIESFDHAHHFWD--KESLEFQRFIENH 87
+ ++ F+E ++ H+ D KES E++ +++NH
Sbjct: 402 LNEKFMEFVEVYE-GHYLNDIIKESSEYKEWVKNH 435
>ref|NP_223450.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 278
Score = 22.7 bits (47), Expect = 7.1
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 19/92 (20%)
Query: 47 NMALDFGLMQQEMQVFIESFDHAHHFWDKES-LEFQRFIENHCVR---YVKC-------- 94
N L G + + V++ + D + KE L +QRF+ C+R + C
Sbjct: 2 NKLLKKGFLAFFLSVYLRADDLVTYTIAKEEDLGYQRFLAKKCLRGKTHPPCFTASKKPK 61
Query: 95 --SFNLSAESYALMFLYYLTKILQKSVFSNDE 124
FN+ S+ YY T ++Q S + E
Sbjct: 62 RKPFNIDKSSH-----YYGTSVVQMSWLQSRE 88
>ref|NP_222879.1| MOLYBDOPTERIN BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 390
Score = 22.7 bits (47), Expect = 7.1
Identities = 23/72 (31%), Positives = 32/72 (43%), Gaps = 9/72 (12%)
Query: 129 VSSVRVHETKNGYAESFL---KDLENPHFKSLV---HDHCVSFSQGIQNLWHDKDFFNKI 182
V+SV V Y FL KD +N K L +D +S S G+ DKDFF
Sbjct: 198 VNSVGVFNMLKNYNTHFLGVLKDDKNLQLKILELQGYDVILS-SAGVSV--GDKDFFKDA 254
Query: 183 ISDEKQCFFHAK 194
+ + F++ K
Sbjct: 255 LKERNALFYYEK 266
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 22.3 bits (46), Expect = 9.3
Identities = 17/75 (22%), Positives = 30/75 (39%)
Query: 111 LTKILQKSVFSNDEGELKVSSVRVHETKNGYAESFLKDLENPHFKSLVHDHCVSFSQGIQ 170
L KI K N E E K+ + + E KD + +K+L + F + ++
Sbjct: 120 LEKIESKKESINKENEKKIKNEASLQVLTQKKEKEEKDFTDSCWKNLYKKNEEEFKEILE 179
Query: 171 NLWHDKDFFNKIISD 185
+ F KI+ +
Sbjct: 180 GFKRKEKFKGKILKE 194
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.325 0.137 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 216,924
Number of Sequences: 1491
Number of extensions: 9603
Number of successful extensions: 53
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 43
Number of HSP's gapped (non-prelim): 15
length of query: 200
length of database: 494,079
effective HSP length: 73
effective length of query: 127
effective length of database: 385,236
effective search space: 48924972
effective search space used: 48924972
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 46 (22.3 bits)