BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645551|ref|NP_207727.1| hypothetical protein
[Helicobacter pylori 26695]
(161 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223587.1| putative [Helicobacter pylori J99] 311 5e-87
ref|NP_224100.1| putative [Helicobacter pylori J99] 26 0.60
ref|NP_223901.1| NADH oxidoreductase I [Helicobacter pylori... 25 1.3
ref|NP_223867.1| putative DGTP PYROPHOSPHOHYDROLASE [Helico... 24 1.7
ref|NP_223745.1| putative dehydrogenase [Helicobacter pylor... 24 1.7
ref|NP_222975.1| putative [Helicobacter pylori J99] 23 3.0
ref|NP_223562.1| putative FLAGELLAR BASAL-BODY/ROD/HOOKPROT... 23 5.1
ref|NP_223779.1| ATP synthase F1, subunit alpha [Helicobact... 22 6.6
ref|NP_223001.1| putative FLAGELLAR-HOOK ASSOCIATED PROTEIN... 22 6.6
ref|NP_223777.1| ATP synthase F1, subunit beta [Helicobacte... 22 8.7
>ref|NP_223587.1| putative [Helicobacter pylori J99]
Length = 161
Score = 311 bits (797), Expect = 5e-87
Identities = 152/161 (94%), Positives = 157/161 (97%)
Query: 1 MTIKVFSPKYPTELEEFYAERIADNPLGFIQRLDLLPSISGFVQKLREHGGEFFEMREGN 60
MTIK+FSP+YPTELEEFYAERIADNPLGFIQRLDLLPSISGFVQKLREHGGEFFEMR+G
Sbjct: 1 MTIKIFSPQYPTELEEFYAERIADNPLGFIQRLDLLPSISGFVQKLREHGGEFFEMRKGE 60
Query: 61 KLIGICGLNPINQTEAELCKFHINSAYQSQGLGQKLYESVEKYAFIKGYTKISLHVSKSQ 120
KLIGICGLN INQTEAELCKFHIN+AYQSQGLGQKLYESVE+YAFIKGYTKISLHVSKSQ
Sbjct: 61 KLIGICGLNHINQTEAELCKFHINTAYQSQGLGQKLYESVERYAFIKGYTKISLHVSKSQ 120
Query: 121 IKACNLYQKLGFVHIKEEDCVVELGEETLIFPTLFMEKILS 161
IKACNLYQKLGF HIKEEDCVVELGEE LIFPTLFMEKILS
Sbjct: 121 IKACNLYQKLGFTHIKEEDCVVELGEEALIFPTLFMEKILS 161
>ref|NP_224100.1| putative [Helicobacter pylori J99]
Length = 510
Score = 25.8 bits (55), Expect = 0.60
Identities = 15/61 (24%), Positives = 24/61 (38%)
Query: 30 IQRLDLLPSISGFVQKLREHGGEFFEMREGNKLIGICGLNPINQTEAELCKFHINSAYQS 89
+Q LP +S F L + FE N +G+ G PI + K+ + +
Sbjct: 346 LQIAKFLPQVSFFGSYLMKQNNSVFEDMIPNWFVGVAGRMPILSPTGRIQKYQASKLAEL 405
Query: 90 Q 90
Q
Sbjct: 406 Q 406
>ref|NP_223901.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 265
Score = 24.6 bits (52), Expect = 1.3
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 50 GGEFFEMREGNKLIGICGLNPINQTEAELCK------FHINSAYQSQGLGQKLYESVEKY 103
G EF + E +K+ G + + + + + F+ QG G++L E+ EK+
Sbjct: 183 GDEFAQWYEVDKIFGKEYREVVGKEQRDSARVDEKDTFNFAKIGYEQGKGEELKETEEKH 242
Query: 104 AFIK 107
AF K
Sbjct: 243 AFKK 246
>ref|NP_223867.1| putative DGTP PYROPHOSPHOHYDROLASE [Helicobacter pylori J99]
Length = 157
Score = 24.3 bits (51), Expect = 1.7
Identities = 10/18 (55%), Positives = 11/18 (60%)
Query: 5 VFSPKYPTELEEFYAERI 22
+ SP YP E F AERI
Sbjct: 14 IMSPDYPNTCEVFIAERI 31
>ref|NP_223745.1| putative dehydrogenase [Helicobacter pylori J99]
Length = 227
Score = 24.3 bits (51), Expect = 1.7
Identities = 13/47 (27%), Positives = 27/47 (56%), Gaps = 1/47 (2%)
Query: 104 AFIKGYTKISLHVSKSQIKACNLYQKLGFVHIKEEDCVVELGEETLI 150
A +K + ++S+ S + +L QKL + +K +C++ L +E +I
Sbjct: 28 AALKKHHQVSVAFSGGR-SPISLLQKLSVLDLKWHECLISLVDERII 73
>ref|NP_222975.1| putative [Helicobacter pylori J99]
Length = 437
Score = 23.5 bits (49), Expect = 3.0
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 44 QKLREHGGEFFEMREGNKLIGICG 67
+KL G+F ++++ N IG+CG
Sbjct: 54 RKLFSEIGQFAKIKKPNAKIGVCG 77
>ref|NP_223562.1| putative FLAGELLAR BASAL-BODY/ROD/HOOKPROTEIN [Helicobacter pylori
J99]
Length = 605
Score = 22.7 bits (47), Expect = 5.1
Identities = 9/16 (56%), Positives = 12/16 (74%)
Query: 44 QKLREHGGEFFEMREG 59
Q LR+ GG +EM+EG
Sbjct: 514 QGLRKIGGNLYEMQEG 529
>ref|NP_223779.1| ATP synthase F1, subunit alpha [Helicobacter pylori J99]
Length = 503
Score = 22.3 bits (46), Expect = 6.6
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 9 KYPTELEEFYAERIADNPL 27
KYP LEE + +++ D L
Sbjct: 468 KYPQVLEEIHTKKVLDKDL 486
>ref|NP_223001.1| putative FLAGELLAR-HOOK ASSOCIATED PROTEIN 3 (HAP3) [Helicobacter
pylori J99]
Length = 828
Score = 22.3 bits (46), Expect = 6.6
Identities = 13/44 (29%), Positives = 22/44 (49%), Gaps = 2/44 (4%)
Query: 67 GLNPINQTEAELCKFHINSAYQSQGLGQKLYESVEKYAFIKGYT 110
G+ P + E KF ++ AYQ+Q K+ + ++K G T
Sbjct: 249 GIRPDGSSFKE--KFALDKAYQNQESATKVSDLLDKIGHAYGNT 290
>ref|NP_223777.1| ATP synthase F1, subunit beta [Helicobacter pylori J99]
Length = 469
Score = 21.9 bits (45), Expect = 8.7
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 40 SGFVQKLREHGGEFFEMREGNKL--IGIC 66
+G ++ RE +FEM+EG L + +C
Sbjct: 183 AGVGERTREGNDLYFEMKEGGVLDKVALC 211
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.321 0.140 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 173,742
Number of Sequences: 1491
Number of extensions: 7548
Number of successful extensions: 22
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 10
length of query: 161
length of database: 494,079
effective HSP length: 71
effective length of query: 90
effective length of database: 388,218
effective search space: 34939620
effective search space used: 34939620
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)