BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645553|ref|NP_207729.1| hypothetical protein
[Helicobacter pylori 26695]
(264 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223590.1| putative [Helicobacter pylori J99] 397 e-112
ref|NP_223591.1| putative [Helicobacter pylori J99] 75 2e-15
ref|NP_223283.1| DNA MISMATCH REPAIR PROTEIN [Helicobacter ... 30 0.085
ref|NP_223402.1| putative [Helicobacter pylori J99] 29 0.15
ref|NP_223759.1| putative [Helicobacter pylori J99] 28 0.19
ref|NP_223858.1| GLYCINAMIDE RIBONUCLEOTIDE SYNTHETASE [Hel... 28 0.32
ref|NP_223280.1| putative lipopolysaccharide biosynthesis p... 27 0.42
ref|NP_223377.1| putative Outer membrane protein [Helicobac... 27 0.72
ref|NP_223642.1| putative [Helicobacter pylori J99] 26 1.2
ref|NP_222897.1| putative cardiolipin synthase [Helicobacte... 26 1.2
ref|NP_223159.1| putative [Helicobacter pylori J99] 25 1.6
ref|NP_223787.1| putative [Helicobacter pylori J99] 24 3.6
ref|NP_223758.1| EXCINUCLEASE ABC SUBUNIT B [Helicobacter p... 24 3.6
ref|NP_222796.1| putative [Helicobacter pylori J99] 24 3.6
ref|NP_223672.1| putative [Helicobacter pylori J99] 24 4.7
ref|NP_223612.1| GLYCYL-TRNA SYNTHETASE ALPHA CHAIN [Helico... 24 4.7
ref|NP_222737.1| DNA transfer protein [Helicobacter pylori ... 24 4.7
ref|NP_224129.1| TYPE III DNA MODIFICATION ENZYME (METHYLTR... 23 6.1
ref|NP_224116.1| putative RIBOFLAVIN-SPECIFIC DEAMINASE [He... 23 6.1
ref|NP_223989.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 23 6.1
ref|NP_223894.1| PROTEIN-EXPORT MEMBRANE PROTEIN [Helicobac... 23 8.0
ref|NP_223733.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 BET... 23 8.0
>ref|NP_223590.1| putative [Helicobacter pylori J99]
Length = 274
Score = 397 bits (1020), Expect = e-112
Identities = 192/222 (86%), Positives = 207/222 (92%)
Query: 43 VLKTCLLLIGKDTTFELKNFNKKNIKEIEENWEKITESIYDAAKLLETFGYVGYLGSAYI 102
+LKTCLLLIGKDTTFELKNFNK+NIKEIE+NWEKITESIY+A KLLE FGY GYLGS YI
Sbjct: 1 MLKTCLLLIGKDTTFELKNFNKQNIKEIEDNWEKITESIYNATKLLENFGYAGYLGSVYI 60
Query: 103 LSSVAYFYFLNQKMDKNDEEQALKFVRNAQITSYFTPSTDTKLNNIDNSMKDVKIFESFN 162
LSS+AYFYFL KM++ND+EQALKFVRNAQITSYFTPSTDTKL+ I +SMKD FESFN
Sbjct: 61 LSSLAYFYFLKSKMNENDKEQALKFVRNAQITSYFTPSTDTKLSIIAHSMKDAPTFESFN 120
Query: 163 HNLAKHQTSPLKITNDAIEEMMCSSSHARVFPILQILYPHLKYKTTTFHIDHIYPKSKFK 222
HNLAKHQTSPLKITNDAIEEMMCSSSHARVFPILQILYP+L YKTTTFHIDHIYPKSKFK
Sbjct: 121 HNLAKHQTSPLKITNDAIEEMMCSSSHARVFPILQILYPNLNYKTTTFHIDHIYPKSKFK 180
Query: 223 KENKKLDKDFYGWGNYLFNLQLLEGAENQAKKDKNPEIWLKE 264
KENKKLDKDFY GN+L+NLQLLEG ENQAKKDK+PE+WLKE
Sbjct: 181 KENKKLDKDFYECGNHLYNLQLLEGTENQAKKDKDPEVWLKE 222
>ref|NP_223591.1| putative [Helicobacter pylori J99]
Length = 291
Score = 75.1 bits (183), Expect = 2e-15
Identities = 37/39 (94%), Positives = 38/39 (96%)
Query: 1 MSYSDLLMSILTASFSSDIREKMNELVDTLKDKGFSNMG 39
+SYSDLLMSILTASFSSDIREKMNELVD LKDKGFSNMG
Sbjct: 253 LSYSDLLMSILTASFSSDIREKMNELVDALKDKGFSNMG 291
>ref|NP_223283.1| DNA MISMATCH REPAIR PROTEIN [Helicobacter pylori J99]
Length = 762
Score = 29.6 bits (65), Expect = 0.085
Identities = 44/213 (20%), Positives = 82/213 (37%), Gaps = 32/213 (15%)
Query: 50 LIGKDTTFELKNFNKKNIKEIEENWE-KITESIYDAAKLLETFGYV-GYLGSAYILSSVA 107
L+ ++ + +K+ + EN E ++ ++YD K T+ ++ G +G +Y +
Sbjct: 434 LLKQNNQIVITTHHKRLSVLMAENKEVELLAALYDEEKERPTYTFLKGVIGKSYAFETAL 493
Query: 108 YFY---FLNQKMDK---NDEEQALKFVRNAQITSYFTPSTDTKLNNIDNSMKDVK----- 156
+ FL +K D+E+ + N+ + L N +D+K
Sbjct: 494 RYGVPPFLIEKAKAFYGEDKEKLNVLIENSSTLERELKQKNEHLENALKEQEDLKNAWLL 553
Query: 157 -------IFESFNHNLAKHQTSPLKITNDAIEEMMCSSSHARVFPILQILYPH-----LK 204
IF L K L I + SS H + +IL H +
Sbjct: 554 EMEKQKEIFHHKKLELEKSYQQALNILKSEVASKDTSSMHKEIHKASEILNKHKTDQEIP 613
Query: 205 YKTTTFHIDHIYPKSKFKKEN----KKLDKDFY 233
T+F I+ K+++K E+ + LDK +Y
Sbjct: 614 QIITSFQINE---KARYKNESVLVIQILDKGYY 643
>ref|NP_223402.1| putative [Helicobacter pylori J99]
Length = 400
Score = 28.9 bits (63), Expect = 0.15
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 23 MNELVDTLKDKGFSNMGQDQVL--KTCLLLIGKDTTFEL---KNFNKKNIKEIEENWEKI 77
+NE + LK +GF + D L + L L K+ E+ KN + + E W K+
Sbjct: 214 LNEALRVLKPRGFLELRTDDSLCFEDSLKLALKNFQCEIEIKKNAQIPVVSKYEARWNKL 273
Query: 78 TESIYD 83
+ IYD
Sbjct: 274 KKDIYD 279
>ref|NP_223759.1| putative [Helicobacter pylori J99]
Length = 267
Score = 28.5 bits (62), Expect = 0.19
Identities = 39/185 (21%), Positives = 73/185 (39%), Gaps = 16/185 (8%)
Query: 1 MSYSDLLMSILTASFSSDIREKMNELVDTLKDKGFSNMGQDQVLKTCLLLIGKDTTFELK 60
M+Y +L S L S +++E NEL+ L++ SN + ++ L I + L
Sbjct: 1 MNYPNLPNSALEISEQPEVKEITNELLKQLQNALRSNAHFSEQVELSLKCIVRILEVLLS 60
Query: 61 NFNKKNIKEIEENWEKITESIYDAAKLLETFGYVGYLGSAYILSSVAYFYFLNQKMDKND 120
KN EI+ + E + +A + L+ + +F N M N+
Sbjct: 61 LDFFKNANEIDSSLRNSIEWLTNAGESLK----------LKMKEYERFFSEFNTSMHANE 110
Query: 121 EEQALKFVRNAQ-ITSYFTPSTDTKLNNIDNSMKDVKIF-----ESFNHNLAKHQTSPLK 174
+E NA+ I S + + + +IF ++ N+ + K++T L+
Sbjct: 111 QEVTNTLNANAENIKSEIKKLENQLIETTTRLLTSYQIFLNQARDNANNQITKNKTQSLE 170
Query: 175 ITNDA 179
A
Sbjct: 171 AITQA 175
>ref|NP_223858.1| GLYCINAMIDE RIBONUCLEOTIDE SYNTHETASE [Helicobacter pylori J99]
Length = 424
Score = 27.7 bits (60), Expect = 0.32
Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 26/100 (26%)
Query: 83 DAAKLLETFGYVGYLGSAYILSSVAYFYFLNQKMDKNDEEQALKFVRNAQITSYFTPSTD 142
+AAKL + Y+ + S +YF + ND ++AL +++NA P
Sbjct: 99 EAAKLEASKSYMKAFVKECGIKSASYF-------ETNDLKEALNYIQNASF-----PLVI 146
Query: 143 TKLNNIDNSMKDVKIFESFNHNLAKHQTSPLKITNDAIEE 182
LN N ++ HQ LKI DA+++
Sbjct: 147 KALNK--------------NTSIVHHQEEALKILEDALKQ 172
>ref|NP_223280.1| putative lipopolysaccharide biosynthesis protein [Helicobacter
pylori J99]
Length = 332
Score = 27.3 bits (59), Expect = 0.42
Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 72 ENWEKITESIYDAAKLLETFGYVGYLGSAYILSSVAYF---YFLNQKMDKNDE 121
+++EK+ + +Y+A LL++ Y Y+G+ L + + Y L ++ K D+
Sbjct: 46 QDFEKLLQELYNAQSLLQSDWYHSYVGAGLTLPELGCYLSHYLLWKECVKLDQ 98
>ref|NP_223377.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 638
Score = 26.6 bits (57), Expect = 0.72
Identities = 13/40 (32%), Positives = 22/40 (54%), Gaps = 2/40 (5%)
Query: 141 TDTKLNNIDNSMKDVKIFESFNHNLAKHQTSPLKITNDAI 180
T + ++N++ D+K F S NH +TSP+ T A+
Sbjct: 72 TANNIQAVNNALSDLKSFASNNH--TNKETSPIYNTAQAV 109
>ref|NP_223642.1| putative [Helicobacter pylori J99]
Length = 195
Score = 25.8 bits (55), Expect = 1.2
Identities = 24/120 (20%), Positives = 49/120 (40%), Gaps = 19/120 (15%)
Query: 63 NKKNIKEIEENWEKITESIYDAAKLLETFGYVGYLGSAYILSSVAYFYFLNQKMDKNDEE 122
N K++K I W ++ S + +++ F + +A+ N+ + D E
Sbjct: 8 NLKDLKNIFLYWYEMFGSNDKSKDMMKAF-----------MKDLAFAKDKNEVIKAQDNE 56
Query: 123 QALKFVRNAQITSY--------FTPSTDTKLNNIDNSMKDVKIFESFNHNLAKHQTSPLK 174
+F++ S+ D L+N +NS + + F S NL K + +P++
Sbjct: 57 LVKEFMQELSSLSFKEQLEFYQTNRDYDPSLDNDENSSELLDAFTSSLENLEKQKINPIR 116
>ref|NP_222897.1| putative cardiolipin synthase [Helicobacter pylori J99]
Length = 502
Score = 25.8 bits (55), Expect = 1.2
Identities = 38/152 (25%), Positives = 60/152 (39%), Gaps = 43/152 (28%)
Query: 64 KKNIKEIEENWEKITESIYDAAKL----------LETFGYVGYLGSAYILSSVAYFYFLN 113
K N+KEI + EKI S DA + + + Y Y G+A L+ L
Sbjct: 239 KNNVKEIAKLHEKIPISAEDANEFEKKVNDFIERFQKYQYPIYYGNAIFLAD------LP 292
Query: 114 QKMD-------KNDEEQALKFVRNAQI--TSYFTP------------STDTKLNNIDNSM 152
K+D K E+ALK +++ +SYF P S +LN + NS+
Sbjct: 293 AKIDTPLYSPIKIAFEKALKNAKDSVFIASSYFIPGKKIMKIFKNQISKGIELNILTNSL 352
Query: 153 KDVK------IFESFNHNLAKHQTSPLKITND 178
+E + + L + + +I ND
Sbjct: 353 SSTDAIVVYGAWERYRNKLVRMGANVYEIRND 384
>ref|NP_223159.1| putative [Helicobacter pylori J99]
Length = 181
Score = 25.4 bits (54), Expect = 1.6
Identities = 23/90 (25%), Positives = 42/90 (46%)
Query: 1 MSYSDLLMSILTASFSSDIREKMNELVDTLKDKGFSNMGQDQVLKTCLLLIGKDTTFELK 60
M+Y +L S L + +++E NEL+ L++ SN + ++ L I + L
Sbjct: 1 MNYPNLPNSTLEITQQPEVKEITNELLKQLQNALHSNALFTEQVELSLKGIVRILEVLLS 60
Query: 61 NFNKKNIKEIEENWEKITESIYDAAKLLET 90
KN EI+ + E + +A + L+T
Sbjct: 61 LDFFKNANEIDSSLRNSIEWLSNAGESLKT 90
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 24.3 bits (51), Expect = 3.6
Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 13/86 (15%)
Query: 11 LTASFSSDIREKMNELVDTLKDKGFSNMGQDQVLKTCLLLIGKDTTFELKNFNKKNIKEI 70
L F SDI+E + +KG +N+ ++ + ++ +L+N IKE+
Sbjct: 429 LINEFKSDIQEYNKKYCGL--EKGINNLEKE-------ISENQEKVKKLEN----EIKEL 475
Query: 71 EENWEKITESIYDAAKLLETFGYVGY 96
E+N I + + LL+ +G+ +
Sbjct: 476 EKNMVSIKPIVNEINTLLKGYGFTNF 501
>ref|NP_223758.1| EXCINUCLEASE ABC SUBUNIT B [Helicobacter pylori J99]
Length = 658
Score = 24.3 bits (51), Expect = 3.6
Identities = 9/42 (21%), Positives = 22/42 (51%)
Query: 190 ARVFPILQILYPHLKYKTTTFHIDHIYPKSKFKKENKKLDKD 231
A+++ + +PH + + H D+ P+S + + ++KD
Sbjct: 70 AQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKD 111
>ref|NP_222796.1| putative [Helicobacter pylori J99]
Length = 590
Score = 24.3 bits (51), Expect = 3.6
Identities = 13/46 (28%), Positives = 23/46 (49%), Gaps = 7/46 (15%)
Query: 142 DTKLNNIDNSMKDVKIFESFNHNLAKHQTSPLKITNDAIEEMMCSS 187
D LN +DN +KD K L+ Q + + D+++++ SS
Sbjct: 360 DNNLNQLDNDLKDQK-------GLSSEQQAQVDKALDSVQQLSHSS 398
>ref|NP_223672.1| putative [Helicobacter pylori J99]
Length = 217
Score = 23.9 bits (50), Expect = 4.7
Identities = 34/159 (21%), Positives = 59/159 (36%), Gaps = 28/159 (17%)
Query: 26 LVDTLKDKGFSNMGQDQVLKTCLLLIG---KDTTFELKNFNKKNIKEIEENWEKITESIY 82
L + L+D F + Q L T L+L+G K T + +N N++ + Y
Sbjct: 59 LENELEDSAFEIIDGQQRLATSLILLGLLAKTTKHKDPKYNSMNLEPVLS---------Y 109
Query: 83 DAAKLLETFGYV--------GYLGSAYILSSVAYFYFLNQKMDKNDEEQALKF--VRNAQ 132
L E FG + + S Y + + + F +K+ E K V +
Sbjct: 110 KYYGLNEAFGAIMGEEKDLERFQTSFYAKNLIDAYAFFKEKISDTPMETLEKMFDVLTKK 169
Query: 133 ITSYFTPSTDTKLN------NIDNSMKDVKIFESFNHNL 165
+ D +++ I+N KD+ E F + L
Sbjct: 170 MLFSVAELNDNRIDPFSSFETINNRGKDLSTLELFKNRL 208
>ref|NP_223612.1| GLYCYL-TRNA SYNTHETASE ALPHA CHAIN [Helicobacter pylori J99]
Length = 298
Score = 23.9 bits (50), Expect = 4.7
Identities = 8/18 (44%), Positives = 13/18 (71%)
Query: 61 NFNKKNIKEIEENWEKIT 78
N N+ +I+ +E+NWE T
Sbjct: 103 NLNEHDIRFVEDNWESPT 120
>ref|NP_222737.1| DNA transfer protein [Helicobacter pylori J99]
Length = 787
Score = 23.9 bits (50), Expect = 4.7
Identities = 23/89 (25%), Positives = 39/89 (42%), Gaps = 10/89 (11%)
Query: 53 KDTTFELKNFNKK--NIKEIEENWEKITESIYDAAKLLETFGYVGYLGSAYILSSVAY-- 108
K +LKN+ K N KE+ + + K L GYL +YI SS+ +
Sbjct: 171 KSLEIQLKNYAPKLLNSKEVLNFYAEYINGFELPLKPLVG----GYLSDSYIASSITFEK 226
Query: 109 FYFLNQKMDKNDEEQ--ALKFVRNAQITS 135
YF+ + ++ + +K + +ITS
Sbjct: 227 DYFIQESFNQKTYNRLIGIKAYESERITS 255
>ref|NP_224129.1| TYPE III DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 641
Score = 23.5 bits (49), Expect = 6.1
Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Query: 6 LLMSILTASFSSDIREKMNELVDTLKDKG 34
L +++ TA DI +M+E+++ LKDKG
Sbjct: 577 LYLALNTAFIVGDI--EMSEVLENLKDKG 603
>ref|NP_224116.1| putative RIBOFLAVIN-SPECIFIC DEAMINASE [Helicobacter pylori J99]
Length = 344
Score = 23.5 bits (49), Expect = 6.1
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 9/45 (20%)
Query: 149 DNSMKDVKIFESFNHNLAKHQTSPLKITNDAIEEMMCSSSHARVF 193
DN + D + +SF HN K N AI S H++VF
Sbjct: 224 DNPLLDARFCDSFYHN---------KNPNIAILSKRSISPHSKVF 259
>ref|NP_223989.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 359
Score = 23.5 bits (49), Expect = 6.1
Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 19 IREKMNELVD---TLKDKGFSNMGQDQVLKTCLLLIGKDTTFELKNFNKKNIKEIEENWE 75
++E +N +++ K K F N D + + T ELK F + +E++W+
Sbjct: 4 LKENLNTIIEGDCLEKLKDFPNKSVDFIFADPPYFM--QTEGELKRFEGTKFQGVEDHWD 61
Query: 76 K 76
K
Sbjct: 62 K 62
>ref|NP_223894.1| PROTEIN-EXPORT MEMBRANE PROTEIN [Helicobacter pylori J99]
Length = 198
Score = 23.1 bits (48), Expect = 8.0
Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 96 YLGSAYILSSVAYFYFLNQKMDKN--DEEQALKFVRN-AQITSYFTPSTDTKLNNIDNSM 152
+LG ++++++A YF N++ K+ DE + K + T P+ + LN N +
Sbjct: 56 FLGLLFVINTIALGYFYNKEYGKSVLDETKTNKELSPLVPATGTLNPTLNPTLNPTLNPL 115
Query: 153 K 153
+
Sbjct: 116 E 116
>ref|NP_223733.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 BETA CHAIN [Helicobacter
pylori J99]
Length = 341
Score = 23.1 bits (48), Expect = 8.0
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 97 LGSAYILSSVAYFYFLNQKMDKNDEEQALKFVRNAQIT 134
L Y S +YFY L + Q ++F++ ++T
Sbjct: 184 LEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVT 221
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.316 0.133 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 306,114
Number of Sequences: 1491
Number of extensions: 15196
Number of successful extensions: 77
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 69
Number of HSP's gapped (non-prelim): 22
length of query: 264
length of database: 494,079
effective HSP length: 76
effective length of query: 188
effective length of database: 380,763
effective search space: 71583444
effective search space used: 71583444
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)