BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645554|ref|NP_207730.1| hypothetical protein
[Helicobacter pylori 26695]
(115 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223591.1| putative [Helicobacter pylori J99] 205 2e-55
ref|NP_224148.1| putative [Helicobacter pylori J99] 37 1e-04
ref|NP_223736.1| PSEUDOURIDYLATE SYNTHASE I [Helicobacter p... 29 0.038
ref|NP_224133.1| EXODEOXYRIBONUCLEASE [Helicobacter pylori ... 28 0.086
ref|NP_222748.1| putative [Helicobacter pylori J99] 25 0.72
ref|NP_224019.1| putative [Helicobacter pylori J99] 23 1.6
ref|NP_223544.1| IS606 TRANSPOSASE [Helicobacter pylori J99] 23 1.6
ref|NP_223528.1| putative IRON-REGULATED OUTER MEMBRANE PRO... 23 2.1
ref|NP_223109.1| putative [Helicobacter pylori J99] 23 2.1
ref|NP_222895.1| putative [Helicobacter pylori J99] 23 2.1
ref|NP_223788.1| putative [Helicobacter pylori J99] 23 2.8
ref|NP_223086.1| 3-METHYL-2-OXOBUTANOATE HYDROXYMETHYLTRANS... 22 4.7
ref|NP_224045.1| FORMYLTETRAHYDROFOLATE HYDROLASE [Helicoba... 21 8.0
ref|NP_223886.1| putative [Helicobacter pylori J99] 21 8.0
ref|NP_223682.1| putative [Helicobacter pylori J99] 21 8.0
>ref|NP_223591.1| putative [Helicobacter pylori J99]
Length = 291
Score = 205 bits (522), Expect = 2e-55
Identities = 101/111 (90%), Positives = 103/111 (91%)
Query: 1 MGVFLDKSIKDVVDGLNVRYFLPDIQREYVWLKKADEKKIEQLFDSILRGYPIGSFLFWK 60
MGVFLDKSIK+VVD LN RYFLPDIQREYVWL+ AD KKIEQLFDSILRGYPIG FLFWK
Sbjct: 1 MGVFLDKSIKEVVDELNGRYFLPDIQREYVWLQNADGKKIEQLFDSILRGYPIGFFLFWK 60
Query: 61 LQKEDIAKSDEQDSDKLNFQLYQFITNYDVRKPHNEKIRIEQINRDDLYIV 111
L KEDIAKSDEQDSDKLNFQLYQFITNYD RKPHNEKIRIEQI RDDLYIV
Sbjct: 61 LPKEDIAKSDEQDSDKLNFQLYQFITNYDERKPHNEKIRIEQIKRDDLYIV 111
>ref|NP_224148.1| putative [Helicobacter pylori J99]
Length = 282
Score = 37.0 bits (84), Expect = 1e-04
Identities = 22/74 (29%), Positives = 37/74 (49%), Gaps = 5/74 (6%)
Query: 5 LDKSIKDVVDGLNVRYF-LPDIQREYVWLKKADEKKIEQLFDSI----LRGYPIGSFLFW 59
+D+ +KD++ V Y+ +PD QR Y W +K EK ++ LF S GY GS +
Sbjct: 8 VDRPLKDILATALVSYYQIPDYQRPYQWTEKNCEKLLDDLFSSYEYYKESGYFCGSLVLI 67
Query: 60 KLQKEDIAKSDEQD 73
+ + ++ D
Sbjct: 68 VINTDSETNAETYD 81
>ref|NP_223736.1| PSEUDOURIDYLATE SYNTHASE I [Helicobacter pylori J99]
Length = 242
Score = 28.9 bits (63), Expect = 0.038
Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 29 YVWLKKADEKKIEQLFDSILRGYPIGSFLFWKLQKED-----IAKSDEQDSDKLNFQLYQ 83
++ LKK +EK FD+ R Y +L K K IA D D LN L Q
Sbjct: 85 HIVLKKLEEKNFHARFDAQKRAY---RYLLTKNLKTPFLAPYIACGDYGSLDALNIALKQ 141
Query: 84 FITNYD 89
FI +D
Sbjct: 142 FIGKHD 147
>ref|NP_224133.1| EXODEOXYRIBONUCLEASE [Helicobacter pylori J99]
Length = 250
Score = 27.7 bits (60), Expect = 0.086
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 19 RYFLPDIQREYVW---LKKADEKKIEQLFDSILRGYPIGSFLFWKLQKEDIAKSD 70
RYF P+ ++ Y W +++A +K I D L P+ + L L +DI SD
Sbjct: 187 RYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNPLKTRLKDALIYKDILGSD 241
>ref|NP_222748.1| putative [Helicobacter pylori J99]
Length = 565
Score = 24.6 bits (52), Expect = 0.72
Identities = 13/58 (22%), Positives = 25/58 (42%)
Query: 26 QREYVWLKKADEKKIEQLFDSILRGYPIGSFLFWKLQKEDIAKSDEQDSDKLNFQLYQ 83
Q+E + + + + + I G P G+ ++ KE K QD +L + Y+
Sbjct: 67 QQETIKASTIESSNLNSIVNKIKSGLPFGTISAFRPFKEAFIKDFTQDERELLVEAYK 124
>ref|NP_224019.1| putative [Helicobacter pylori J99]
Length = 314
Score = 23.5 bits (49), Expect = 1.6
Identities = 11/32 (34%), Positives = 17/32 (52%), Gaps = 4/32 (12%)
Query: 20 YFLPDIQREYVWLKKADEKKIEQLFDSILRGY 51
Y +P+ QR YVW D+ + L D ++ Y
Sbjct: 22 YQVPNYQRPYVW----DKDHLGALIDDLVVSY 49
>ref|NP_223544.1| IS606 TRANSPOSASE [Helicobacter pylori J99]
Length = 442
Score = 23.5 bits (49), Expect = 1.6
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 77 LNFQLYQFITNYDVRKPHNEKIRIE 101
LN YQ I+ D ++ HN K+ ++
Sbjct: 348 LNTSFYQIISFLDYKQQHNGKLLVK 372
>ref|NP_223528.1| putative IRON-REGULATED OUTER MEMBRANE PROTEIN [Helicobacter pylori
J99]
Length = 791
Score = 23.1 bits (48), Expect = 2.1
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 82 YQFITNYDVRKPHNEKIRIEQINRDD 107
YQ ++ +D R P +E R Q+ DD
Sbjct: 413 YQNLSVFDARIPKSELYRPNQVYTDD 438
>ref|NP_223109.1| putative [Helicobacter pylori J99]
Length = 294
Score = 23.1 bits (48), Expect = 2.1
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 98 IRIEQINRDDLYIVANSV 115
I+I N+D+L+++AN V
Sbjct: 181 IKINSKNKDELFLIANMV 198
>ref|NP_222895.1| putative [Helicobacter pylori J99]
Length = 567
Score = 23.1 bits (48), Expect = 2.1
Identities = 10/28 (35%), Positives = 15/28 (52%)
Query: 20 YFLPDIQREYVWLKKADEKKIEQLFDSI 47
Y +P+ QR+Y W K E L ++I
Sbjct: 14 YSIPNYQRDYAWKDKNFRDLWEDLEEAI 41
>ref|NP_223788.1| putative [Helicobacter pylori J99]
Length = 433
Score = 22.7 bits (47), Expect = 2.8
Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 9 IKDVVDGLN-VRYFLPDIQREYVWLKKADEKKIEQLFDSILRGY 51
+ +++G +R L +R + K+ EK+IE++F+S + Y
Sbjct: 362 VNAIIEGFEQLRADLESEKRAMARIWKSREKQIEKVFESTINMY 405
>ref|NP_223086.1| 3-METHYL-2-OXOBUTANOATE HYDROXYMETHYLTRANSFERASE [Helicobacter
pylori J99]
Length = 270
Score = 21.9 bits (45), Expect = 4.7
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 21 FLPDIQREYVWLKKADEKKIEQLFDSILRG 50
F P REY+ K+ + I+Q D + +G
Sbjct: 231 FKPKFVREYLKGKELIQNAIQQYADDVKKG 260
>ref|NP_224045.1| FORMYLTETRAHYDROFOLATE HYDROLASE [Helicobacter pylori J99]
Length = 293
Score = 21.2 bits (43), Expect = 8.0
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 76 KLNFQLYQFITNYDVRKPHNEKIRI 100
+LN Q+ I+N+++ +P EK I
Sbjct: 118 ELNAQILGVISNHEILRPLVEKFDI 142
>ref|NP_223886.1| putative [Helicobacter pylori J99]
Length = 340
Score = 21.2 bits (43), Expect = 8.0
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 1 MGVFLDKSIKDVVDGL 16
+G+FL KS+ D+ D L
Sbjct: 226 LGLFLKKSVLDIYDYL 241
>ref|NP_223682.1| putative [Helicobacter pylori J99]
Length = 261
Score = 21.2 bits (43), Expect = 8.0
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 31 WLKKADEKKIEQLFDSILRGY 51
+L K D K + +D+ LRGY
Sbjct: 232 FLDKTDHSKTLEGYDAPLRGY 252
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.321 0.142 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 120,797
Number of Sequences: 1491
Number of extensions: 5103
Number of successful extensions: 22
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 15
length of query: 115
length of database: 494,079
effective HSP length: 67
effective length of query: 48
effective length of database: 394,182
effective search space: 18920736
effective search space used: 18920736
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 43 (21.2 bits)