BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644725|ref|NP_206895.1| hypothetical protein
[Helicobacter pylori 26695]
(176 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222808.1| putative [Helicobacter pylori J99] 331 8e-93
ref|NP_224000.1| putative histidine kinase sensor protein [... 27 0.41
ref|NP_223534.1| putative [Helicobacter pylori J99] 26 0.69
ref|NP_223278.1| ASPARTYL-TRNA SYNTHETASE [Helicobacter pyl... 25 0.90
ref|NP_224152.1| DNA REPAIR PROTEIN(RECOMBINATION PROTEIN N... 25 1.2
ref|NP_224109.1| putative [Helicobacter pylori J99] 25 1.2
ref|NP_223874.1| putative [Helicobacter pylori J99] 25 1.2
ref|NP_223787.1| putative [Helicobacter pylori J99] 25 1.2
ref|NP_223651.1| putative [Helicobacter pylori J99] 25 1.2
ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99] 25 1.2
ref|NP_222891.1| LYSYL-TRNA SYNTHETASE [Helicobacter pylori... 25 1.5
ref|NP_223090.1| putative [Helicobacter pylori J99] 24 2.0
ref|NP_223283.1| DNA MISMATCH REPAIR PROTEIN [Helicobacter ... 24 2.6
ref|NP_223195.1| cag island protein [Helicobacter pylori J99] 23 3.4
ref|NP_223270.1| putative [Helicobacter pylori J99] 23 4.5
ref|NP_222899.1| Fumarate reductase [Helicobacter pylori J99] 23 4.5
ref|NP_222783.1| putative [Helicobacter pylori J99] 23 5.9
ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (... 22 7.6
ref|NP_223809.1| putative [Helicobacter pylori J99] 22 7.6
ref|NP_223445.1| putative HEAVY-METAL CATION-TRANSPORTING P... 22 7.6
ref|NP_223132.1| polyphosphate kinase [Helicobacter pylori ... 22 7.6
ref|NP_222917.1| 90kDa chaperone [Helicobacter pylori J99] 22 7.6
ref|NP_223891.1| putative [Helicobacter pylori J99] 22 10.0
>ref|NP_222808.1| putative [Helicobacter pylori J99]
Length = 176
Score = 331 bits (848), Expect = 8e-93
Identities = 169/176 (96%), Positives = 173/176 (98%)
Query: 1 MPKPKKNTLPCSLSVKMSYFMRFLIKWRTRSLSHKMMTLIQILSILALASKASEDLEEQL 60
MPKPKKNTLPCSLSVKMSYFMR LIKWRTRSLSHKMMTL+QILSILALASKASEDLEEQL
Sbjct: 1 MPKPKKNTLPCSLSVKMSYFMRLLIKWRTRSLSHKMMTLVQILSILALASKASEDLEEQL 60
Query: 61 KKIKDYIYRTLNAKIASDVYNRVLILVNEYCTNEELFDKESVKISDLLIQDIQLYALVDE 120
KKIKDYIY+TLNAKIASDVY+RVLILVNEYC NEELFDKESVKISDLLIQDIQLYALVDE
Sbjct: 61 KKIKDYIYKTLNAKIASDVYDRVLILVNEYCANEELFDKESVKISDLLIQDIQLYALVDE 120
Query: 121 MLKEDKYQVQHTILKGIIKRKYDEAYSLNSEDRILLEYQERLLEHSHASFSNKKFK 176
MLKEDKYQVQHTILKGIIKRKYDEAYSLNSEDRILLEYQERLLE S+ASFSNKKFK
Sbjct: 121 MLKEDKYQVQHTILKGIIKRKYDEAYSLNSEDRILLEYQERLLEPSYASFSNKKFK 176
>ref|NP_224000.1| putative histidine kinase sensor protein [Helicobacter pylori J99]
Length = 344
Score = 26.6 bits (57), Expect = 0.41
Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 25/114 (21%)
Query: 43 LSILALASKASEDLEEQLKKIK------DYIYRTLNAKIASDVYNRVLILVNEYCTNEEL 96
+S L L+ K ED +Q ++IK ++YR+L+ + D+
Sbjct: 153 MSALVLSLKTLED-NQQHRRIKIAIQRMSFLYRSLSYLVMQDI----------------- 194
Query: 97 FDKESVKISDLLIQDIQLYALVDEMLKEDKYQVQHTILKGIIKRKYDEAYSLNS 150
++ES + DL + L EM+ K + + ++ ++K K + SL S
Sbjct: 195 -ERESFALLDLKALITKENTLFSEMIDYHKLEFKSDLVGVVLKAKEQDFISLYS 247
>ref|NP_223534.1| putative [Helicobacter pylori J99]
Length = 614
Score = 25.8 bits (55), Expect = 0.69
Identities = 27/105 (25%), Positives = 49/105 (45%), Gaps = 13/105 (12%)
Query: 57 EEQLKKIKDYIYRTLNAKIASDVYNRVLILVNEYCTNEELFDKESVKISDLLIQDIQLYA 116
EE +K + +Y+T + KI S+ Y R E +E+L E + ++ D + Y
Sbjct: 68 EEYYEKKELTLYQTHDIKIKSNAYKRFF----EVKVDEDLSKIEIILDECFIVLDTEEY- 122
Query: 117 LVDEMLKEDKYQVQHTILKGIIKRKYDEAY-SLNSEDRILLEYQE 160
EM Y + +G++ R + + Y +L +E L +YQ+
Sbjct: 123 -YQEMF---AYIKERLAFEGVVFRHFSQMYENLKTE---LRKYQK 160
>ref|NP_223278.1| ASPARTYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 579
Score = 25.4 bits (54), Expect = 0.90
Identities = 17/63 (26%), Positives = 31/63 (48%), Gaps = 7/63 (11%)
Query: 117 LVDEMLKEDKYQVQHTILKGIIKRKYDEAYSLNSEDR-------ILLEYQERLLEHSHAS 169
+V+++L+E + HTI K + Y EA D+ L+E + ++ S++
Sbjct: 247 VVEDLLQEIFKAIGHTISKPFKRMPYKEAMENYGSDKPDLRFELPLIEVGDCFMDSSNSI 306
Query: 170 FSN 172
FSN
Sbjct: 307 FSN 309
>ref|NP_224152.1| DNA REPAIR PROTEIN(RECOMBINATION PROTEIN N) [Helicobacter pylori
J99]
Length = 522
Score = 25.0 bits (53), Expect = 1.2
Identities = 12/40 (30%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 133 ILKGIIKRKYDEAYSLNS-EDRILLEYQERLLEHSHASFS 171
+LKG+IKR ++ +S N D ++L + +++ + +FS
Sbjct: 115 LLKGLIKRLSNDRFSQNELNDILMLSLLDGYIQNKNKAFS 154
>ref|NP_224109.1| putative [Helicobacter pylori J99]
Length = 355
Score = 25.0 bits (53), Expect = 1.2
Identities = 32/137 (23%), Positives = 61/137 (44%), Gaps = 15/137 (10%)
Query: 8 TLPCSLSVKMS-YFMRFLIKWRTRSLSHKMMTLIQILSILALASKASEDLEEQL------ 60
TLP SL + M +++ F+ + +L + QILS + L S + L
Sbjct: 60 TLPISLLLAMVLFYITFIKSNQYTALLSIGFSKCQILSPIFLISLFFTAVYVGLNATPFV 119
Query: 61 ---KKIKDYIYRTLNAKIASDV---YNRVLILVNEYCTNEELFDKESVKISDLLIQDIQL 114
+K ++ IY+ + ++ + YN + ++ N L +++K+ L + ++
Sbjct: 120 YMEEKTQNLIYKDNSLSVSEHLLVKYNDDYVYFDKI--NPLLQKAQNIKVFRLKDKTLES 177
Query: 115 YALVDEMLKEDKYQVQH 131
YA E EDKY + H
Sbjct: 178 YAEAKEAFFEDKYWILH 194
>ref|NP_223874.1| putative [Helicobacter pylori J99]
Length = 415
Score = 25.0 bits (53), Expect = 1.2
Identities = 15/58 (25%), Positives = 29/58 (49%), Gaps = 2/58 (3%)
Query: 13 LSVKMSYFMRFLI-KWRTRSLS-HKMMTLIQILSILALASKASEDLEEQLKKIKDYIY 68
L + YF F+ + +TRS ++ ++ + +LAL SE++ + KD+ Y
Sbjct: 6 LQSALLYFRYFIYPEKKTRSFDLSDLIFIVMVFLVLALGLLMSEEISISYNEAKDFFY 63
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 25.0 bits (53), Expect = 1.2
Identities = 23/93 (24%), Positives = 43/93 (45%), Gaps = 19/93 (20%)
Query: 54 EDLEEQLKKIKDYIYRTLNAKIASDV--YNR--------VLILVNEYCTNEELFDKESVK 103
+D+E+Q K K+ ++ L + SD+ YN+ + L E N+E K +
Sbjct: 412 KDIEKQKKSCKEQTWKFLINEFKSDIQEYNKKYCGLEKGINNLEKEISENQEKVKKLENE 471
Query: 104 ISDLLIQDIQLYALVDEMLKEDKYQVQHTILKG 136
I +L + + +V+E+ +T+LKG
Sbjct: 472 IKELEKNMVSIKPIVNEI---------NTLLKG 495
>ref|NP_223651.1| putative [Helicobacter pylori J99]
Length = 339
Score = 25.0 bits (53), Expect = 1.2
Identities = 10/36 (27%), Positives = 23/36 (63%)
Query: 87 VNEYCTNEELFDKESVKISDLLIQDIQLYALVDEML 122
+NE+ T++ ++ +K D L Q+I +LV++++
Sbjct: 124 LNEFFTHKIIYKDTPLKFKDTLEQEISQASLVEKLI 159
>ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99]
Length = 856
Score = 25.0 bits (53), Expect = 1.2
Identities = 15/63 (23%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 22 RFLIKWRTRSLSHKMMTLIQILSILALASKASEDLEEQLKKIKDYIYRTLNAKIASDVYN 81
R + K ++L +K + + LS+L +K + EE+LKK+ + + ++ N + D +
Sbjct: 220 RIVNKEVPKTLLNKRVVALD-LSLLVAGAKYRGEFEERLKKVIEEVKKSANVILFIDEIH 278
Query: 82 RVL 84
++
Sbjct: 279 TIV 281
>ref|NP_222891.1| LYSYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 501
Score = 24.6 bits (52), Expect = 1.5
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 54 EDLEEQLKKIKDYIYRTLNAKIASDVYNRVLILVNE 89
EDL E K++ DY+ +TLN + +YN + + N+
Sbjct: 277 EDLIELSKRLFDYLLKTLNLD-SKIIYNDMEVDFNQ 311
>ref|NP_223090.1| putative [Helicobacter pylori J99]
Length = 440
Score = 24.3 bits (51), Expect = 2.0
Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 4/41 (9%)
Query: 92 TNEELFDKESVKISDLLIQDIQLYALVDEMLKEDKYQVQHT 132
T LF +++ ++ + +DI L AL D++ K++K+Q HT
Sbjct: 228 TTPLLFKRKTHRLRE---RDINLSALKDKIAKQEKFQ-NHT 264
>ref|NP_223283.1| DNA MISMATCH REPAIR PROTEIN [Helicobacter pylori J99]
Length = 762
Score = 23.9 bits (50), Expect = 2.6
Identities = 19/78 (24%), Positives = 40/78 (50%), Gaps = 2/78 (2%)
Query: 65 DYIYRTLNAKIASDVYNRVLILVNEYCTNEELFDKESVKISDLLIQDIQLYALVDEMLKE 124
D I +A AS +Y +L + + N+ + ++S L+ ++ ++ L+ + E
Sbjct: 412 DEIELGTDADEASSLYKTLLEKLLKQ-NNQIVITTHHKRLSVLMAENKEV-ELLAALYDE 469
Query: 125 DKYQVQHTILKGIIKRKY 142
+K + +T LKG+I + Y
Sbjct: 470 EKERPTYTFLKGVIGKSY 487
>ref|NP_223195.1| cag island protein [Helicobacter pylori J99]
Length = 522
Score = 23.5 bits (49), Expect = 3.4
Identities = 17/64 (26%), Positives = 29/64 (44%), Gaps = 6/64 (9%)
Query: 41 QILSILALASKASEDLEEQLKKIKDYIYRTLNAKIASDVYNRVLILVNEYCTNEELFDKE 100
++ S++ K E+ + Q + IK T + NRV++ NE N+E +E
Sbjct: 318 EVSSVIEEELKKREEAKRQRELIKQENLNT------TAYINRVMMASNEQIINKEKIREE 371
Query: 101 SVKI 104
KI
Sbjct: 372 KQKI 375
>ref|NP_223270.1| putative [Helicobacter pylori J99]
Length = 477
Score = 23.1 bits (48), Expect = 4.5
Identities = 17/71 (23%), Positives = 30/71 (41%)
Query: 89 EYCTNEELFDKESVKISDLLIQDIQLYALVDEMLKEDKYQVQHTILKGIIKRKYDEAYSL 148
E E DK ++ + +LL +L + L + HTI K + + +Y+
Sbjct: 72 EIAKYHEKSDKAALGLYELLKGATTNLSLQAQELSVKQAMKNHTIAKAMFLPTLNASYNF 131
Query: 149 NSEDRILLEYQ 159
+E R EY+
Sbjct: 132 KNEARDTPEYK 142
>ref|NP_222899.1| Fumarate reductase [Helicobacter pylori J99]
Length = 714
Score = 23.1 bits (48), Expect = 4.5
Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 120 EMLKEDKYQVQHTILKGIIKRKYDEAYSLNSED 152
E L +D+ +VQH ++ ++ KY +A ++ ED
Sbjct: 651 EKLGKDRIEVQHALMPFELQEKY-KARNMRLED 682
>ref|NP_222783.1| putative [Helicobacter pylori J99]
Length = 806
Score = 22.7 bits (47), Expect = 5.9
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 53 SEDLEEQLKKIKDYIYRTLNAKIA 76
S+++EE LK + +Y+ L K+A
Sbjct: 159 SKEIEEALKHLHEYLKVNLQEKLA 182
>ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 1252
Score = 22.3 bits (46), Expect = 7.6
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 2 PKPKKNTLPCSLSVKMSYFMRFLIKWRTRSLSHKMM 37
PK ++N L + + YF+ + K + SL H ++
Sbjct: 96 PKNRENPLSKAFCQMVLYFLEEIEKEKNNSLKHTII 131
>ref|NP_223809.1| putative [Helicobacter pylori J99]
Length = 386
Score = 22.3 bits (46), Expect = 7.6
Identities = 10/35 (28%), Positives = 21/35 (59%)
Query: 20 FMRFLIKWRTRSLSHKMMTLIQILSILALASKASE 54
F +F+ K SLS + + ++++S+L L+ + E
Sbjct: 319 FSKFVSKNNISSLSSLLSSCVRVVSVLILSLSSLE 353
>ref|NP_223445.1| putative HEAVY-METAL CATION-TRANSPORTING P-TYPE ATPASE
[Helicobacter pylori J99]
Length = 686
Score = 22.3 bits (46), Expect = 7.6
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 12/57 (21%)
Query: 119 DEMLKEDKYQVQHTILKGIIKRKYDEAYSLNSEDR----ILLEYQERLLEHSHASFS 171
+EMLK+DK+ QH I + Y+E + + + +++ E++L+ H + S
Sbjct: 438 EEMLKDDKH--QHDI------KNYEELSGMGVKAQCHTDLIIAGNEKMLDQFHIAHS 486
>ref|NP_223132.1| polyphosphate kinase [Helicobacter pylori J99]
Length = 675
Score = 22.3 bits (46), Expect = 7.6
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 57 EEQLKKIKDYIYRTLNAKIASDVYNRVLILVNEYCTN--EELFDKESVKISDLLIQDIQL 114
EEQL+KIK Y+ + + + L+ C EL ++ K + QL
Sbjct: 73 EEQLEKIKHYLAHEIEERELEFQKIQALLFKKGLCITPYNELNLEQKAKAKTYFKE--QL 130
Query: 115 YALV 118
YALV
Sbjct: 131 YALV 134
>ref|NP_222917.1| 90kDa chaperone [Helicobacter pylori J99]
Length = 621
Score = 22.3 bits (46), Expect = 7.6
Identities = 9/39 (23%), Positives = 21/39 (53%)
Query: 85 ILVNEYCTNEELFDKESVKISDLLIQDIQLYALVDEMLK 123
++++ +N+E+F +E + + + + L DE LK
Sbjct: 18 LMIHSLYSNKEIFLRELISNASDALDKLNYLMLTDEKLK 56
>ref|NP_223891.1| putative [Helicobacter pylori J99]
Length = 595
Score = 21.9 bits (45), Expect = 10.0
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 48 LASKASEDLEEQLKKIKDY 66
++SKA +DL E++ KDY
Sbjct: 515 ISSKAVDDLIEKIINAKDY 533
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.319 0.134 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 177,823
Number of Sequences: 1491
Number of extensions: 7576
Number of successful extensions: 43
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 26
Number of HSP's gapped (non-prelim): 23
length of query: 176
length of database: 494,079
effective HSP length: 72
effective length of query: 104
effective length of database: 386,727
effective search space: 40219608
effective search space used: 40219608
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)