BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645560|ref|NP_207736.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(125 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223597.1| putative [Helicobacter pylori J99] 240 1e-65
ref|NP_223868.1| ASPARTOKINASE 2 ALPHA AND BETA SUBUNITS [H... 27 0.17
ref|NP_223266.1| FLAGELLIN A [Helicobacter pylori J99] 27 0.23
ref|NP_223330.1| putative [Helicobacter pylori J99] 24 1.5
ref|NP_223196.1| cag island protein [Helicobacter pylori J99] 23 1.9
ref|NP_224203.1| ABC transporter, permease [Helicobacter py... 22 4.3
ref|NP_222754.1| putative [Helicobacter pylori J99] 22 5.6
ref|NP_222881.1| putative [Helicobacter pylori J99] 22 7.3
ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [He... 22 7.3
ref|NP_224211.1| putative [Helicobacter pylori J99] 21 9.5
ref|NP_223967.1| CATION EFFLUX SYSTEM PROTEIN [Helicobacter... 21 9.5
>ref|NP_223597.1| putative [Helicobacter pylori J99]
Length = 125
Score = 240 bits (612), Expect = 1e-65
Identities = 124/125 (99%), Positives = 124/125 (99%)
Query: 1 MKEVIHSTLAPKAIGPYSQAIATNDLVFVSGQLGIDVSTGEFKGADIHSQTTQSMENIKA 60
MKEVIHSTLAPKAIGPYSQAIATNDLVFVSGQLGIDVSTGEFKGADIHSQTTQSMENIKA
Sbjct: 1 MKEVIHSTLAPKAIGPYSQAIATNDLVFVSGQLGIDVSTGEFKGADIHSQTTQSMENIKA 60
Query: 61 ILKEAGLGMDSVVKTTILLKSLDDFAVVNGIYGSYFTEPYPARATFQVAKLPKDALVEIE 120
ILKEAGLGMDSVVKTTILLKSLDDFAVVNGIYGSYF EPYPARATFQVAKLPKDALVEIE
Sbjct: 61 ILKEAGLGMDSVVKTTILLKSLDDFAVVNGIYGSYFKEPYPARATFQVAKLPKDALVEIE 120
Query: 121 AIAIK 125
AIAIK
Sbjct: 121 AIAIK 125
>ref|NP_223868.1| ASPARTOKINASE 2 ALPHA AND BETA SUBUNITS [Helicobacter pylori J99]
Length = 405
Score = 26.9 bits (58), Expect = 0.17
Identities = 20/84 (23%), Positives = 37/84 (43%), Gaps = 10/84 (11%)
Query: 42 FKGADIHSQTTQSMENIKAILKEAGLGMDSVVKTTILLKSLDDFAVVNGIYGSYFTEPYP 101
F+GADI +TT L G + +V L L + + + G Y T+P
Sbjct: 135 FQGADIQGETTT--------LGRGGSDLSAVALAGALKAHLCE--IYTDVDGVYTTDPRI 184
Query: 102 ARATFQVAKLPKDALVEIEAIAIK 125
++A++ D ++E+ ++ K
Sbjct: 185 EEKAQKIAQISYDEMLELASMGAK 208
>ref|NP_223266.1| FLAGELLIN A [Helicobacter pylori J99]
Length = 510
Score = 26.6 bits (57), Expect = 0.23
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
Query: 1 MKEVIHSTLAPKAIGPYSQAIATNDLVFVSGQLGIDVSTGEFKG--ADIHSQTTQS--ME 56
+ EVI+ + Y+ I T+D+ SG L G G ADI + +
Sbjct: 217 LAEVINKNSNRTGVKAYASVITTSDVAVQSGSLSNLTLNGIHLGNIADIKKNDSDGRLVA 276
Query: 57 NIKAILKEAGLGMDSVVKTTILLKSLD 83
I A+ E G+ + K + L+S+D
Sbjct: 277 AINAVTSETGVEAYTDQKGRLNLRSID 303
>ref|NP_223330.1| putative [Helicobacter pylori J99]
Length = 450
Score = 23.9 bits (50), Expect = 1.5
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 17 YSQAIATNDLVFVSGQLGIDVSTGEFKGADIHSQTTQSMENIKAI--LKEAGLGMD 70
+ +I+ ND+ QL V +FK I S + + E +KAI ++ G+G+D
Sbjct: 83 HQNSISYNDISPFLTQLLSGVGGVKFKKGIIISTSNLTSEALKAIEQIRSTGMGID 138
>ref|NP_223196.1| cag island protein [Helicobacter pylori J99]
Length = 535
Score = 23.5 bits (49), Expect = 1.9
Identities = 14/42 (33%), Positives = 21/42 (49%), Gaps = 9/42 (21%)
Query: 62 LKEAGLGMDSVVKTTILLKSLDDF---------AVVNGIYGS 94
+ + GLG+DS + + I L L F A+VN I+ S
Sbjct: 467 INQGGLGIDSTIASLITLFILKGFIETIIESVNAIVNTIFSS 508
>ref|NP_224203.1| ABC transporter, permease [Helicobacter pylori J99]
Length = 215
Score = 22.3 bits (46), Expect = 4.3
Identities = 16/44 (36%), Positives = 22/44 (49%)
Query: 77 ILLKSLDDFAVVNGIYGSYFTEPYPARATFQVAKLPKDALVEIE 120
ILL L F + I S P A VAKL +++L+E+E
Sbjct: 70 ILLLPLSRFLIGTSIGSSASIIPLAISAIPFVAKLFENSLMEVE 113
>ref|NP_222754.1| putative [Helicobacter pylori J99]
Length = 335
Score = 21.9 bits (45), Expect = 5.6
Identities = 17/64 (26%), Positives = 29/64 (44%), Gaps = 5/64 (7%)
Query: 59 KAILKEAGLGMDSVVKTTILL--KSLDDFAVV---NGIYGSYFTEPYPARATFQVAKLPK 113
KA L++ G+ + + K L K+ A V + G Y + P+ + + L K
Sbjct: 34 KASLQKGGVALKELPKGVYLYYSKTYPKHAKVIKSDPFIGLYLLQSAPSEYVYTLRDLDK 93
Query: 114 DALV 117
DAL+
Sbjct: 94 DALI 97
>ref|NP_222881.1| putative [Helicobacter pylori J99]
Length = 242
Score = 21.6 bits (44), Expect = 7.3
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 76 TILLKSLDDFAVVNGIYGSYFTEPYPARATFQV 108
T+L +SL+D+A G + F + A F +
Sbjct: 52 TLLPQSLNDYAHSQGFFAGVFAWVFKALVYFLI 84
>ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [Helicobacter pylori J99]
Length = 681
Score = 21.6 bits (44), Expect = 7.3
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 48 HSQTTQSMENIKAILKEAGLGMDSV 72
H Q T +++ + +E GL +D V
Sbjct: 537 HIQETGKEPDLEVVAEEVGLSLDKV 561
>ref|NP_224211.1| putative [Helicobacter pylori J99]
Length = 209
Score = 21.2 bits (43), Expect = 9.5
Identities = 14/45 (31%), Positives = 18/45 (39%)
Query: 42 FKGADIHSQTTQSMENIKAILKEAGLGMDSVVKTTILLKSLDDFA 86
FK HS + + G G+ SVV L K+LD A
Sbjct: 124 FKAGGSHSYALAVAVADAMVRQTLGHGLSSVVGKVALKKTLDILA 168
>ref|NP_223967.1| CATION EFFLUX SYSTEM PROTEIN [Helicobacter pylori J99]
Length = 1035
Score = 21.2 bits (43), Expect = 9.5
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 107 QVAKLPKDALVEI 119
+V+ LPKDA VEI
Sbjct: 116 RVSNLPKDAKVEI 128
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.316 0.133 0.359
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 118,403
Number of Sequences: 1491
Number of extensions: 4445
Number of successful extensions: 15
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 11
length of query: 125
length of database: 494,079
effective HSP length: 68
effective length of query: 57
effective length of database: 392,691
effective search space: 22383387
effective search space used: 22383387
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 43 (21.2 bits)