BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645561|ref|NP_207737.1| hypothetical protein
[Helicobacter pylori 26695]
(98 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223640.1| Component of conjugal plasmid transfer sys... 24 0.89
ref|NP_223907.1| NADH oxidoreductase I [Helicobacter pylori... 23 2.0
ref|NP_222918.1| putative [Helicobacter pylori J99] 22 2.6
ref|NP_223649.1| putative [Helicobacter pylori J99] 22 3.4
ref|NP_223804.1| putative [Helicobacter pylori J99] 21 5.7
ref|NP_223383.1| putative [Helicobacter pylori J99] 20 9.8
>ref|NP_223640.1| Component of conjugal plasmid transfer system [Helicobacter pylori
J99]
Length = 511
Score = 23.9 bits (50), Expect = 0.89
Identities = 22/74 (29%), Positives = 33/74 (43%), Gaps = 15/74 (20%)
Query: 23 TPPLLAAFSTEQLPAATRLKTLQQLARPSLEYCASFPETGIVTIVIRVPVGEEDAQPLIK 82
TP A S +L A + +T PS E C + E + T+ E+ + +IK
Sbjct: 402 TPQPKNAISVTELLAQIKNQT------PSKE-CRALNEEEVKTL--------EEVKNIIK 446
Query: 83 TPKHTLANFKRNLK 96
TPK + K+N K
Sbjct: 447 TPKPLQKDLKKNAK 460
>ref|NP_223907.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 220
Score = 22.7 bits (47), Expect = 2.0
Identities = 11/34 (32%), Positives = 17/34 (49%)
Query: 16 LTILILVTPPLLAAFSTEQLPAATRLKTLQQLAR 49
LTI +P + + EQLP + R + + L R
Sbjct: 40 LTIKEFFSPSVTIHYPMEQLPLSPRYRAVHHLQR 73
>ref|NP_222918.1| putative [Helicobacter pylori J99]
Length = 250
Score = 22.3 bits (46), Expect = 2.6
Identities = 11/27 (40%), Positives = 15/27 (54%)
Query: 72 VGEEDAQPLIKTPKHTLANFKRNLKSS 98
V + +AQ K K + NFK+ KSS
Sbjct: 209 VMQYNAQGTAKDEKQAVENFKKGCKSS 235
>ref|NP_223649.1| putative [Helicobacter pylori J99]
Length = 156
Score = 21.9 bits (45), Expect = 3.4
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 1 MVYLPTIPKKLFVSRLTILILVTP 24
M+Y+P K+++VS + L + +P
Sbjct: 1 MLYIPPTSKEVYVSSIVALNIHSP 24
>ref|NP_223804.1| putative [Helicobacter pylori J99]
Length = 141
Score = 21.2 bits (43), Expect = 5.7
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 57 SFPETGIVTIVIRVPVGEEDAQPL 80
+ P T + ++VI P+ +E+A L
Sbjct: 63 AIPHTPLGSVVINAPLAQENALKL 86
>ref|NP_223383.1| putative [Helicobacter pylori J99]
Length = 338
Score = 20.4 bits (41), Expect = 9.8
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 78 QPLIKTPKHTLANFKRNLK 96
+PL+ TPK TL ++ K
Sbjct: 151 RPLLYTPKDTLKTLAKDQK 169
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.321 0.136 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,312
Number of Sequences: 1491
Number of extensions: 2407
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 98
length of database: 494,079
effective HSP length: 64
effective length of query: 34
effective length of database: 398,655
effective search space: 13554270
effective search space used: 13554270
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 41 (20.4 bits)