BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645563|ref|NP_207739.1| hypothetical protein
[Helicobacter pylori 26695]
(120 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223599.1| putative [Helicobacter pylori J99] 226 1e-61
ref|NP_223929.1| putative [Helicobacter pylori J99] 29 0.042
ref|NP_222851.1| A/G-SPECIFIC ADENINE GLYCOSYLASE [Helicoba... 25 0.47
ref|NP_224210.1| FLAGELLAR BASAL-BODY ROD PROTEIN (DISTAL R... 24 1.4
ref|NP_223921.1| ANTHRANILATE SYNTHASE COMPONENT I [Helicob... 23 3.0
ref|NP_223534.1| putative [Helicobacter pylori J99] 23 3.0
ref|NP_223274.1| putative vacuolating cytotoxin (VacA) para... 22 4.0
ref|NP_223296.1| putative [Helicobacter pylori J99] 22 5.2
ref|NP_222994.1| putative [Helicobacter pylori J99] 22 5.2
ref|NP_222986.1| putative LIPID A BIOSYNTHESIS ACYLTRANSFER... 22 5.2
ref|NP_222931.1| putative PEPTIDE METHIONINE SULFOXIDE REDU... 22 5.2
ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter py... 22 6.8
ref|NP_223491.1| putative [Helicobacter pylori J99] 22 6.8
ref|NP_223955.1| 50S RIBOSOMAL PROTEIN L23 [Helicobacter py... 21 8.8
ref|NP_223747.1| ZINC-DEPENDENT ALCOHOL DEHYDROGENASE [Heli... 21 8.8
>ref|NP_223599.1| putative [Helicobacter pylori J99]
Length = 120
Score = 226 bits (576), Expect = 1e-61
Identities = 110/120 (91%), Positives = 115/120 (95%)
Query: 1 MLSVLSGDDLKLYSKLSVYSAGSGMIGIDIDKRTFYKRAFAFTMKSLFGENLLLFVKLKH 60
MLSVL+GDDL+LYSK VYSAGSG+IGIDIDKRTFYKRAFAFTMKSLFGENLLLFVKLKH
Sbjct: 1 MLSVLNGDDLRLYSKPLVYSAGSGIIGIDIDKRTFYKRAFAFTMKSLFGENLLLFVKLKH 60
Query: 61 SALTSKHMKGPLENRHHHSFTKNYEKAVNGCQKYFHIKLPEGAPSNFKSGSYMATMVVRF 120
SAL SKHMKGPLENRHHHSF KNYEKAVNGCQKY HIKLPEGAPSNF+SGSYMATMV+RF
Sbjct: 61 SALMSKHMKGPLENRHHHSFAKNYEKAVNGCQKYVHIKLPEGAPSNFQSGSYMATMVMRF 120
>ref|NP_223929.1| putative [Helicobacter pylori J99]
Length = 204
Score = 28.9 bits (63), Expect = 0.042
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 42 FTMKSLFGENLLLFVKLKHSALTSKHMKGPLEN-RHHHSFTKNYEKAVNGC 91
FT+ S GE + LF + TSK++K PL++ R F+ + +A N C
Sbjct: 136 FTLPSFKGEQISLFSLDLKARFTSKNLKYPLKDLRLKTLFSGSLNEATNHC 186
>ref|NP_222851.1| A/G-SPECIFIC ADENINE GLYCOSYLASE [Helicobacter pylori J99]
Length = 328
Score = 25.4 bits (54), Expect = 0.47
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 77 HHSFTKNYEKAVNGCQKYFHIKLPEGAPSNFK---SGSYMATMVVRF 120
++S KN +K+ C K H +LP S K G+Y A ++ F
Sbjct: 84 YYSRAKNLKKSAEICVKEHHSQLPNDYQSLLKLPGIGAYTANAILCF 130
>ref|NP_224210.1| FLAGELLAR BASAL-BODY ROD PROTEIN (DISTAL ROD PROTEIN) [Helicobacter
pylori J99]
Length = 262
Score = 23.9 bits (50), Expect = 1.4
Identities = 15/56 (26%), Positives = 31/56 (54%), Gaps = 8/56 (14%)
Query: 58 LKHSALTSKHMKG-PLENRHHHSFTKNYEKAVNGCQKYFHIKLPEGAPSNFKSGSY 112
++ SA+T +G P E + N + A+ G + +F ++LP+G + +SG++
Sbjct: 72 VRPSAITKMFSQGSPKETEN------NLDIAITG-KGFFQVQLPDGTTAYTRSGNF 120
>ref|NP_223921.1| ANTHRANILATE SYNTHASE COMPONENT I [Helicobacter pylori J99]
Length = 500
Score = 22.7 bits (47), Expect = 3.0
Identities = 8/24 (33%), Positives = 13/24 (53%)
Query: 84 YEKAVNGCQKYFHIKLPEGAPSNF 107
Y + + G Y+H+KL +P F
Sbjct: 258 YMECLEGLSAYYHLKLSNPSPYMF 281
>ref|NP_223534.1| putative [Helicobacter pylori J99]
Length = 614
Score = 22.7 bits (47), Expect = 3.0
Identities = 11/34 (32%), Positives = 15/34 (43%)
Query: 57 KLKHSALTSKHMKGPLENRHHHSFTKNYEKAVNG 90
K+ HS H K E R ++ Y KA+ G
Sbjct: 244 KVAHSPTPIGHDKNAFEEREENNALVYYSKALQG 277
>ref|NP_223274.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 3194
Score = 22.3 bits (46), Expect = 4.0
Identities = 9/34 (26%), Positives = 17/34 (49%)
Query: 51 NLLLFVKLKHSALTSKHMKGPLENRHHHSFTKNY 84
NL ++LK++ T + K N + H++ Y
Sbjct: 408 NLWNIIRLKNTQATKDNSKNATSNNNTHTYYVTY 441
>ref|NP_223296.1| putative [Helicobacter pylori J99]
Length = 512
Score = 21.9 bits (45), Expect = 5.2
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 6/45 (13%)
Query: 35 FYKRAFAFTMKSLFGENLLLFVKLKHSALTSKHMKGPLENRHHHS 79
FY R + +L G NLL F ++ L G E+ H HS
Sbjct: 359 FYARIVELSQYNLVGANLLDFFRILGFVL------GYSEDFHSHS 397
>ref|NP_222994.1| putative [Helicobacter pylori J99]
Length = 157
Score = 21.9 bits (45), Expect = 5.2
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 99 LPEGAPSNFKSGSYMATMVVRF 120
LPE + F+SG MA + VRF
Sbjct: 38 LPELNLTPFESGKLMAQIFVRF 59
>ref|NP_222986.1| putative LIPID A BIOSYNTHESIS ACYLTRANSFERASE [Helicobacter pylori
J99]
Length = 328
Score = 21.9 bits (45), Expect = 5.2
Identities = 7/22 (31%), Positives = 15/22 (67%)
Query: 16 LSVYSAGSGMIGIDIDKRTFYK 37
+ +Y+ G+G++GI +D+ K
Sbjct: 205 IKMYNQGNGLVGILVDQNVVPK 226
>ref|NP_222931.1| putative PEPTIDE METHIONINE SULFOXIDE REDUCTASE [Helicobacter
pylori J99]
Length = 359
Score = 21.9 bits (45), Expect = 5.2
Identities = 7/22 (31%), Positives = 14/22 (62%)
Query: 57 KLKHSALTSKHMKGPLENRHHH 78
KL++ +KH + P EN +++
Sbjct: 215 KLQYEVTQNKHTEKPFENEYYN 236
>ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter pylori J99]
Length = 831
Score = 21.6 bits (44), Expect = 6.8
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 55 FVKLKHSALTSKHMKGPLENRHH 77
F + + AL KH+K L+N H+
Sbjct: 303 FGQYEKKALDIKHVKEQLDNDHY 325
>ref|NP_223491.1| putative [Helicobacter pylori J99]
Length = 462
Score = 21.6 bits (44), Expect = 6.8
Identities = 15/59 (25%), Positives = 29/59 (48%), Gaps = 3/59 (5%)
Query: 3 SVLSGDDLKLYSKLSVYSAGSGMIGIDIDKRTFYKRAFAFTMKSLFGENLLLFVKLKHS 61
S+ S +DLKL+ ++ + ++ ID +R++AF S FG + + H+
Sbjct: 98 SIPSDEDLKLFREVFKTNPNCFLVINKIDNDKEKERSYAF---SSFGTPKSFNISVSHN 153
>ref|NP_223955.1| 50S RIBOSOMAL PROTEIN L23 [Helicobacter pylori J99]
Length = 93
Score = 21.2 bits (43), Expect = 8.8
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 16/92 (17%)
Query: 12 LYSKLSVYSAGSGMIGIDIDKRTFYKRAFAFTMKSLFGENLLLFVKLKHSALTSKHMKGP 71
LY++ S+ G++ + + K K+ FG L LK K +G
Sbjct: 11 LYTEKSLGLQEKGVLVVQTAQNVT-KNQLKEVFKTYFGFEPLKINSLKQEGKV-KRFRGK 68
Query: 72 LENRHHHSFTKNYEKAVNGCQKYFHIKLPEGA 103
L R K+++K F++K+PEGA
Sbjct: 69 LGQR------KSFKK--------FYVKVPEGA 86
>ref|NP_223747.1| ZINC-DEPENDENT ALCOHOL DEHYDROGENASE [Helicobacter pylori J99]
Length = 350
Score = 21.2 bits (43), Expect = 8.8
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 9 DLKLYSKLSVYSAGSGMIGI 28
DLK Y KL YS ++G+
Sbjct: 249 DLKDYLKLLTYSGELALVGL 268
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.322 0.136 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 123,861
Number of Sequences: 1491
Number of extensions: 5125
Number of successful extensions: 20
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 15
length of query: 120
length of database: 494,079
effective HSP length: 67
effective length of query: 53
effective length of database: 394,182
effective search space: 20891646
effective search space used: 20891646
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 43 (21.2 bits)