BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645565|ref|NP_207741.1| conserved hypothetical
secreted protein [Helicobacter pylori 26695]
(150 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223601.1| putative [Helicobacter pylori J99] 293 1e-81
ref|NP_224209.1| putative O-SIALOGLYCOPROTEIN ENDOPEPTIDASE... 27 0.31
ref|NP_224133.1| EXODEOXYRIBONUCLEASE [Helicobacter pylori ... 27 0.31
ref|NP_223497.1| PANTOTHENATE METABOLISM FLAVOPROTEIN [Heli... 24 1.6
ref|NP_224158.1| FRUCTOSE-1,6-BISPHOSPHATASE [Helicobacter ... 24 2.0
ref|NP_224208.1| PYRIDOXAL PHOSPHATE BIOSYNTHETIC PROTEIN A... 23 2.7
ref|NP_223267.1| ENDONUCLEASE III [Helicobacter pylori J99] 23 4.5
ref|NP_223164.1| UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE L... 23 4.5
ref|NP_224182.1| PENICILLIN-BINDING PROTEIN [Helicobacter p... 22 5.9
ref|NP_224100.1| putative [Helicobacter pylori J99] 22 5.9
ref|NP_223857.1| putative [Helicobacter pylori J99] 22 5.9
ref|NP_223370.1| RNA POLYMERASE SIGMA-54 FACTOR [Helicobact... 22 5.9
ref|NP_223262.1| PENICILLIN-BINDING PROTEIN [Helicobacter p... 22 5.9
ref|NP_223761.1| putative [Helicobacter pylori J99] 22 7.7
ref|NP_223646.1| putative [Helicobacter pylori J99] 22 7.7
>ref|NP_223601.1| putative [Helicobacter pylori J99]
Length = 150
Score = 293 bits (751), Expect = 1e-81
Identities = 142/150 (94%), Positives = 148/150 (98%)
Query: 1 MRCVVYSIAKSSPLELVKIYQKQCRQFDCELELVDLFPKNTANAQKVSKKLAQKSYSLAF 60
MRCVVYSIAK+SPLELVK YQKQC++FDCELELVDLFPKNTANAQKVSK+LAQKSYSLAF
Sbjct: 1 MRCVVYSIAKNSPLELVKSYQKQCKRFDCELELVDLFPKNTANAQKVSKELAQKSYSLAF 60
Query: 61 EPYLNPKAKNIALHPKAQRGDSFAFSKMLENHLNINFFIAGAYGFEENFLKDCQAWSLSE 120
EPYL+PKAKNIALHP+AQRGDSFAFSKMLENHLNINFFIAGAYGFEE FLKDCQAWSLSE
Sbjct: 61 EPYLSPKAKNIALHPEAQRGDSFAFSKMLENHLNINFFIAGAYGFEEKFLKDCQAWSLSE 120
Query: 121 MTFSHEVAKIVLCEQIYRALSIIFKHPYHK 150
MTFSHEVAKIVLCEQIYRALSIIFKHPYHK
Sbjct: 121 MTFSHEVAKIVLCEQIYRALSIIFKHPYHK 150
>ref|NP_224209.1| putative O-SIALOGLYCOPROTEIN ENDOPEPTIDASE [Helicobacter pylori
J99]
Length = 340
Score = 26.6 bits (57), Expect = 0.31
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 11 SSPLELVKIYQKQCRQFDCELELVDL 36
S L L K ++ C +FDCEL L L
Sbjct: 274 SQNLALRKAFEDLCAEFDCELVLAPL 299
>ref|NP_224133.1| EXODEOXYRIBONUCLEASE [Helicobacter pylori J99]
Length = 250
Score = 26.6 bits (57), Expect = 0.31
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 5 VYSIAKSSPLEL-----VKIYQKQCRQFDCELELVDLFPKNTANAQKVSKKLAQK-SYSL 58
V + K PL + +K + K+ R CE E L T N+Q+ +L+ + S+ +
Sbjct: 65 VVTFTKKEPLSVSYGIDIKEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEV 124
Query: 59 AFEPYL 64
F+ +L
Sbjct: 125 EFKKFL 130
>ref|NP_223497.1| PANTOTHENATE METABOLISM FLAVOPROTEIN [Helicobacter pylori J99]
Length = 425
Score = 24.3 bits (51), Expect = 1.6
Identities = 22/64 (34%), Positives = 32/64 (49%), Gaps = 5/64 (7%)
Query: 31 LELVDLFPKNTANAQKVSKKLAQKSYS-LAFEPYLNPKAKNIALHPKAQRGDSFAFSKML 89
LELV L K+ A+ Q V K AQK L+FE + K LH + ++ +K+
Sbjct: 33 LELVRLLFKSGASIQVVMSKGAQKFIKPLSFEALSHHK----VLHDRNEKWYYNHQNKLH 88
Query: 90 ENHL 93
NH+
Sbjct: 89 HNHI 92
>ref|NP_224158.1| FRUCTOSE-1,6-BISPHOSPHATASE [Helicobacter pylori J99]
Length = 290
Score = 23.9 bits (50), Expect = 2.0
Identities = 11/46 (23%), Positives = 20/46 (42%)
Query: 93 LNINFFIAGAYGFEENFLKDCQAWSLSEMTFSHEVAKIVLCEQIYR 138
+ NF + G E K + + F H++ +V E++YR
Sbjct: 104 MEANFLVGTIIGVYEKDYKAQNLVASLYVVFGHKIELVVALEEVYR 149
>ref|NP_224208.1| PYRIDOXAL PHOSPHATE BIOSYNTHETIC PROTEIN A [Helicobacter pylori
J99]
Length = 307
Score = 23.5 bits (49), Expect = 2.7
Identities = 11/42 (26%), Positives = 21/42 (49%)
Query: 45 QKVSKKLAQKSYSLAFEPYLNPKAKNIALHPKAQRGDSFAFS 86
+K+ K + + + +L FE +L P + A P ++ F S
Sbjct: 207 EKILKAIQESNQTLGFECFLGPLPADSAFAPNKRKITPFYVS 248
>ref|NP_223267.1| ENDONUCLEASE III [Helicobacter pylori J99]
Length = 218
Score = 22.7 bits (47), Expect = 4.5
Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 107 ENFLKDC-QAWSLSEMTFSHEVAKIVLCEQIYRALSIIFKHPY 148
ENF ++ + W L + E A +LC + + ++ K+ Y
Sbjct: 112 ENFKQEVTKEWLLDQKGIGKESADAILCYVCAKEVMVVDKYSY 154
>ref|NP_223164.1| UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE [Helicobacter
pylori J99]
Length = 422
Score = 22.7 bits (47), Expect = 4.5
Identities = 10/17 (58%), Positives = 11/17 (63%)
Query: 60 FEPYLNPKAKNIALHPK 76
FE YLN K K + L PK
Sbjct: 179 FENYLNAKLKVLTLMPK 195
>ref|NP_224182.1| PENICILLIN-BINDING PROTEIN [Helicobacter pylori J99]
Length = 613
Score = 22.3 bits (46), Expect = 5.9
Identities = 14/55 (25%), Positives = 23/55 (41%)
Query: 68 AKNIALHPKAQRGDSFAFSKMLENHLNINFFIAGAYGFEENFLKDCQAWSLSEMT 122
AKN + ++ F F++ I I G++G EE + A E+T
Sbjct: 534 AKNGSYSAESYNSSFFGFAEDERQVFTIGVVILGSHGKEEYYASKIAAPIFKEIT 588
>ref|NP_224100.1| putative [Helicobacter pylori J99]
Length = 510
Score = 22.3 bits (46), Expect = 5.9
Identities = 21/71 (29%), Positives = 30/71 (41%), Gaps = 8/71 (11%)
Query: 35 DLFPKNTANAQKVSKKLA-----QKSYSLAFEPYLNPKAKNIALHPKAQ---RGDSFAFS 86
D P N +NAQK+S K A L + Y +A + L K + D AF
Sbjct: 36 DSLPLNHSNAQKLSLKNAWNRVLSNHEGLHAQEYAIKRASKMKLAAKLSFLPQIDLSAFY 95
Query: 87 KMLENHLNINF 97
L N + ++F
Sbjct: 96 VYLSNPIKMDF 106
>ref|NP_223857.1| putative [Helicobacter pylori J99]
Length = 159
Score = 22.3 bits (46), Expect = 5.9
Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 18/66 (27%)
Query: 103 YGFEENFLKDCQAWSLSEMTFSHEVAKIVLCEQIYRALS------------------IIF 144
YG E F SL+++ F ++ I L + RA+ ++F
Sbjct: 80 YGVYEIFFVCLCKMSLAKLVFRIKIIDIYLADCPSRAILLKRLGLKIVVFLCPFLWFVVF 139
Query: 145 KHPYHK 150
K+PYH+
Sbjct: 140 KNPYHR 145
>ref|NP_223370.1| RNA POLYMERASE SIGMA-54 FACTOR [Helicobacter pylori J99]
Length = 414
Score = 22.3 bits (46), Expect = 5.9
Identities = 24/99 (24%), Positives = 38/99 (38%), Gaps = 12/99 (12%)
Query: 36 LFPKNTAN--AQKVSKKLAQKSYSLAFEPYLNPKAKNIALHPKAQRGDSFAFSKMLENHL 93
LFP T+ A + L + Y FE + +AK + + +S + K+ +
Sbjct: 91 LFPTETSQKIAMDIISGLNNEGY---FEENIEERAKVLGV-------ESEVYEKVRKRFS 140
Query: 94 NINFFIAGAYGFEENFLKDCQAWSLSEMTFSHEVAKIVL 132
+N GA +E FL L E KI+L
Sbjct: 141 YLNPAGIGAKDVKEGFLFQLDGRELDNNELYEETRKIIL 179
>ref|NP_223262.1| PENICILLIN-BINDING PROTEIN [Helicobacter pylori J99]
Length = 660
Score = 22.3 bits (46), Expect = 5.9
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 54 KSYSLAFEPYLNPKAKNIALHPKAQRGDSFAFSKMLENHLNINFFIAGAYGFEE----NF 109
K+ L E L K K + + ++ + ++LE +LN FF G YG + F
Sbjct: 127 KNMVLTREKTLTRKLKEAIISIRIEK--VLSKEEILERYLNQTFFGHGYYGVKTASLGYF 184
Query: 110 LKDCQAWSLSEMT 122
K +L E+T
Sbjct: 185 KKPLDKLTLKEIT 197
>ref|NP_223761.1| putative [Helicobacter pylori J99]
Length = 1154
Score = 21.9 bits (45), Expect = 7.7
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 36 LFPKNTANAQKVSKKLAQKSY 56
L+P ANA+K++K +K++
Sbjct: 962 LYPLELANAEKLAKLETEKAF 982
>ref|NP_223646.1| putative [Helicobacter pylori J99]
Length = 150
Score = 21.9 bits (45), Expect = 7.7
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 51 LAQKSYSLAFEPYLNPKAKNIALHPKAQR 79
LA+ S ++P NPK+K + + A++
Sbjct: 59 LAKMSKDRNYKPAFNPKSKEVLKNLNAEK 87
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.323 0.135 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 159,890
Number of Sequences: 1491
Number of extensions: 6900
Number of successful extensions: 25
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 15
length of query: 150
length of database: 494,079
effective HSP length: 70
effective length of query: 80
effective length of database: 389,709
effective search space: 31176720
effective search space used: 31176720
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)