BLAST Search Results

BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645569|ref|NP_207745.1| hypothetical protein
[Helicobacter pylori 26695]
         (188 letters)

Database: NC_000921.faa
           1491 sequences; 494,079 total letters

Searching...done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_223605.1|  putative [Helicobacter pylori J99]              350  1e-98
ref|NP_223588.1|  putative outer membrane protein [Helicobac...    30  0.031
ref|NP_223367.1|  putative Outer membrane protein [Helicobac...    30  0.031
ref|NP_223242.1|  METHYLENETETRAHYDROFOLATE DEHYDROGENASE/ME...    26  0.76
ref|NP_223132.1|  polyphosphate kinase [Helicobacter pylori ...    24  2.2
ref|NP_222768.1|  putative TYPE II restriction enzyme [Helic...    24  2.9
ref|NP_224080.1|  putative Outer membrane protein [Helicobac...    23  3.8
ref|NP_223550.1|  putative [Helicobacter pylori J99]               23  3.8
ref|NP_223213.1|  cag island protein, CYTOTOXICITY ASSOCIATE...    23  6.4
ref|NP_223293.1|  Hydrogenase, large subunit [Helicobacter p...    22  8.4

>ref|NP_223605.1| putative [Helicobacter pylori J99]
          Length = 188

 Score =  350 bits (898), Expect = 1e-98
 Identities = 180/188 (95%), Positives = 183/188 (96%)

Query: 1   MFKRMVLIALLGVFSSVSLSAKSLLRDDGILVSDLKGMKSELSDAPAWVFEDAKAPYEEM 60
           MFKRMVLIALLGVFSSVSLSAKSLLRDDGILVSDLKGMKSELSDAPAWVFED K PYEEM
Sbjct: 1   MFKRMVLIALLGVFSSVSLSAKSLLRDDGILVSDLKGMKSELSDAPAWVFEDPKVPYEEM 60

Query: 61  GVAYIPVNNKYLGIEQATLNAKLSLIVVFHEIMMKYKKRFMEQFHESEQTTTNISYAIYN 120
           GVAYIPVNNKYLGIEQATLNAKLSLIVVFHEIM+KYKKRFMEQFHESEQT TNISYAIYN
Sbjct: 61  GVAYIPVNNKYLGIEQATLNAKLSLIVVFHEIMLKYKKRFMEQFHESEQTATNISYAIYN 120

Query: 121 YLATKIQVSNTYTNLKSEVAVVKIKLVGCQIEQIKRYLKASVENLNDNEIAYIAKVAQKE 180
           YLATKI+VS+TYTNLKSEVAVVKIKL GCQIEQIKRYLKASVENLNDNEIAYIAKVAQKE
Sbjct: 121 YLATKIRVSDTYTNLKSEVAVVKIKLEGCQIEQIKRYLKASVENLNDNEIAYIAKVAQKE 180

Query: 181 FGSVCALR 188
           FGSVC LR
Sbjct: 181 FGSVCTLR 188



>ref|NP_223588.1| putative outer membrane protein [Helicobacter pylori J99]
          Length = 668

 Score = 30.4 bits (67), Expect = 0.031
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 6/46 (13%)

Query: 103 QFHESEQTTTNISYAIYNYLATKI---QVSNTYTNLKSEVAVVKIK 145
           Q  E   TTT  +YA YNYL T     + +N +TN +   A+ K+K
Sbjct: 37  QTQEKRHTTTKNTYATYNYLPTDTILKRAANLFTNAE---AISKLK 79



>ref|NP_223367.1| putative Outer membrane protein [Helicobacter pylori J99]
          Length = 657

 Score = 30.4 bits (67), Expect = 0.031
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 6/46 (13%)

Query: 103 QFHESEQTTTNISYAIYNYLATKI---QVSNTYTNLKSEVAVVKIK 145
           Q  E   TTT  +YA YNYL T     + +N +TN +   A+ K+K
Sbjct: 37  QTQEKRHTTTKNTYATYNYLPTDTILKRAANLFTNAE---AISKLK 79



>ref|NP_223242.1| METHYLENETETRAHYDROFOLATE DEHYDROGENASE/METHENYLTETRAHYDROFOLATE
           CYCLOHYDROLASE [Helicobacter pylori J99]
          Length = 290

 Score = 25.8 bits (55), Expect = 0.76
 Identities = 19/74 (25%), Positives = 33/74 (43%), Gaps = 12/74 (16%)

Query: 114 ISYAIYNYLATKIQVSNTYTNLKSEVAV------------VKIKLVGCQIEQIKRYLKAS 161
           ++Y I   L  KIQ+    T+ + ++AV            V +K+  CQ   +   LK  
Sbjct: 14  LAYNIEKDLKNKIQIITAQTHKRPKLAVILVGKDPASITYVNMKIKACQRVGMDFDLKTL 73

Query: 162 VENLNDNEIAYIAK 175
            EN+ + E+  + K
Sbjct: 74  KENITEAELLSLIK 87



>ref|NP_223132.1| polyphosphate kinase [Helicobacter pylori J99]
          Length = 675

 Score = 24.3 bits (51), Expect = 2.2
 Identities = 13/35 (37%), Positives = 21/35 (59%)

Query: 112 TNISYAIYNYLATKIQVSNTYTNLKSEVAVVKIKL 146
           T++S   YN L+ KI    ++ + K+E+A   IKL
Sbjct: 449 THLSTGNYNPLSAKIYTDVSFFSAKNEIANDIIKL 483



>ref|NP_222768.1| putative TYPE II restriction enzyme [Helicobacter pylori J99]
          Length = 260

 Score = 23.9 bits (50), Expect = 2.9
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 7/63 (11%)

Query: 49  VFEDAKAPYE---EMGVAYIP-VNNKYLGIEQATLNAKLSLIVVFHEIMMKYKKRFMEQF 104
           +FE    P E   ++G  +   +NNK LG+E   LN     I   ++ ++K     M +F
Sbjct: 104 IFEKCSEPKETNRQIGPMFKDWINNKSLGVEPVDLN---DFIANENDAILKASDNVMAEF 160

Query: 105 HES 107
            +S
Sbjct: 161 AKS 163



>ref|NP_224080.1| putative Outer membrane protein [Helicobacter pylori J99]
          Length = 248

 Score = 23.5 bits (49), Expect = 3.8
 Identities = 17/67 (25%), Positives = 33/67 (48%), Gaps = 9/67 (13%)

Query: 1  MFKRMVLIALLGVFSSVSLSAK--------SLLRDDGILVSDLKGMKSELSDAPAWVFED 52
          M KR+VL+  LGV ++   SA         S++++   +V+D  G++  L   P +    
Sbjct: 1  MLKRIVLLGALGVLANAEESAAFVGVNYQVSMIQNQTKMVND-NGLQKPLIKFPPYAGPG 59

Query: 53 AKAPYEE 59
           +  Y++
Sbjct: 60 FEVGYKQ 66



>ref|NP_223550.1| putative [Helicobacter pylori J99]
          Length = 95

 Score = 23.5 bits (49), Expect = 3.8
 Identities = 17/60 (28%), Positives = 33/60 (54%), Gaps = 6/60 (10%)

Query: 111 TTNISYAIYNYLATKIQVSNTYTNLKSEV--AVVKIKLVGCQIEQIKRYLKASVENLNDN 168
           TTN  Y  Y+    + Q+ N   ++K++   A+ K+K +  Q ++IK+ L+    +L +N
Sbjct: 4   TTNKDYTKYS----QKQLFNFLNSIKAKQKRALEKLKEIQTQKQRIKKALQFKALHLTEN 59



>ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATED IMMUNODOMINANT ANTIGEN
           [Helicobacter pylori J99]
          Length = 1167

 Score = 22.7 bits (47), Expect = 6.4
 Identities = 10/35 (28%), Positives = 21/35 (59%)

Query: 150 QIEQIKRYLKASVENLNDNEIAYIAKVAQKEFGSV 184
           +IE  ++  KA ++ L ++ IA+++K  +K    V
Sbjct: 428 EIEDFQKDSKAYLDALGNDHIAFVSKKDKKHLALV 462



>ref|NP_223293.1| Hydrogenase, large subunit [Helicobacter pylori J99]
          Length = 578

 Score = 22.3 bits (46), Expect = 8.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 66  PVNNKYLGIEQATLNAKLSLIVVFHEIMM 94
           P +N Y G +   LN + +LIV+ H + +
Sbjct: 168 PFSNGYYGHKTYRLNPEQNLIVLSHYLKL 196



  Database: NC_000921.faa
    Posted date:  Dec 10, 2001  4:36 PM
  Number of letters in database: 494,079
  Number of sequences in database:  1491
  
Lambda     K      H
   0.319    0.133    0.359 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 173,763
Number of Sequences: 1491
Number of extensions: 7227
Number of successful extensions: 35
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 25
Number of HSP's gapped (non-prelim): 11
length of query: 188
length of database: 494,079
effective HSP length: 73
effective length of query: 115
effective length of database: 385,236
effective search space: 44302140
effective search space used: 44302140
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)