BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645578|ref|NP_207754.1| acyl carrier protein (acpP)
[Helicobacter pylori 26695]
(153 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223224.1| ACYL CARRIER PROTEIN [Helicobacter pylori ... 119 4e-29
ref|NP_223614.1| putative [Helicobacter pylori J99] 41 2e-05
ref|NP_223616.1| putative [Helicobacter pylori J99] 31 0.013
ref|NP_223761.1| putative [Helicobacter pylori J99] 28 0.15
ref|NP_223773.1| putative [Helicobacter pylori J99] 27 0.33
ref|NP_223560.1| putative [Helicobacter pylori J99] 27 0.33
ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helico... 27 0.33
ref|NP_222748.1| putative [Helicobacter pylori J99] 25 0.73
ref|NP_223130.1| putative ZINC PROTEASE [Helicobacter pylor... 25 1.2
ref|NP_223699.1| 30S RIBOSOMAL PROTEIN S1 [Helicobacter pyl... 24 1.6
ref|NP_223624.1| GLYCYL-TRNA SYNTHETASE BETA CHAIN [Helicob... 24 1.6
ref|NP_223406.1| putative FLAGELLIN PROTEIN [Helicobacter p... 23 2.8
ref|NP_222772.1| putative [Helicobacter pylori J99] 23 2.8
ref|NP_223801.1| putative Outer membrane protein [Helicobac... 23 3.6
ref|NP_223068.1| putative [Helicobacter pylori J99] 23 3.6
ref|NP_223441.1| PREPROTEIN TRANSLOCASE SUBUNIT [Helicobact... 23 4.7
ref|NP_222977.1| putative [Helicobacter pylori J99] 23 4.7
ref|NP_224085.1| THYMIDYLATE KINASE [Helicobacter pylori J99] 22 6.1
ref|NP_223983.1| GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE [... 22 6.1
ref|NP_223721.1| putative [Helicobacter pylori J99] 22 6.1
ref|NP_223644.1| putative [Helicobacter pylori J99] 22 6.1
ref|NP_223574.1| putative vacuolating cytotoxin (VacA) para... 22 6.1
ref|NP_223417.1| putative [Helicobacter pylori J99] 22 6.1
ref|NP_223055.1| putative [Helicobacter pylori J99] 22 6.1
ref|NP_223044.1| FLAGELLAR M-RING PROTEIN [Helicobacter pyl... 22 6.1
ref|NP_222938.1| motility protein [Helicobacter pylori J99] 22 6.1
ref|NP_223274.1| putative vacuolating cytotoxin (VacA) para... 22 8.0
>ref|NP_223224.1| ACYL CARRIER PROTEIN [Helicobacter pylori J99]
Length = 78
Score = 119 bits (298), Expect = 4e-29
Identities = 63/70 (90%), Positives = 66/70 (94%), Gaps = 1/70 (1%)
Query: 81 FETIQSVIAEQLNVDAVQVTPEAEFVKDLGADS-DVVELIMALEEKFGIEIPDEQAEKIV 139
FE IQ+VIAEQLNVDA QVTPEAEFVKDLGADS DVVELIMALEEKF IEIPDEQAEKIV
Sbjct: 4 FEDIQAVIAEQLNVDAAQVTPEAEFVKDLGADSLDVVELIMALEEKFNIEIPDEQAEKIV 63
Query: 140 NVGDVMRYIE 149
NVGDV++YIE
Sbjct: 64 NVGDVVKYIE 73
>ref|NP_223614.1| putative [Helicobacter pylori J99]
Length = 230
Score = 40.8 bits (94), Expect = 2e-05
Identities = 17/26 (65%), Positives = 22/26 (84%)
Query: 41 EKDYENLLNNEKLQKKLREWRRTKNQ 66
EK+Y++ LNNEKLQ LREWRR+K +
Sbjct: 205 EKNYQDHLNNEKLQNDLREWRRSKRR 230
Score = 35.8 bits (81), Expect = 5e-04
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 39 DEEKDYENLLNNEKLQKKLREWRRTKN--QQNNNKTF 73
+ + +Y+ LN+EKLQ LREWR KN ++ N + F
Sbjct: 107 EADNNYQESLNDEKLQNNLREWRDLKNTPEEENYREF 143
>ref|NP_223616.1| putative [Helicobacter pylori J99]
Length = 244
Score = 31.2 bits (69), Expect = 0.013
Identities = 18/33 (54%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Query: 9 ERYTERVNQGGVWGSFKRKFLS-WADDDAGYDE 40
ERYTERV QGG+ G + R F S + + D GY+E
Sbjct: 32 ERYTERVEQGGL-GGWARWFGSVFGEKDWGYEE 63
>ref|NP_223761.1| putative [Helicobacter pylori J99]
Length = 1154
Score = 27.7 bits (60), Expect = 0.15
Identities = 13/50 (26%), Positives = 23/50 (46%)
Query: 44 YENLLNNEKLQKKLREWRRTKNQQNNNKTFNTNDTNSFETIQSVIAEQLN 93
YE++ N +L K+ E + K+ QN + N N F + ++ N
Sbjct: 1074 YEDIANYRELSKQANETLKLKDNQNRPVVASFNQINGFFVVVEQVSNAKN 1123
>ref|NP_223773.1| putative [Helicobacter pylori J99]
Length = 263
Score = 26.6 bits (57), Expect = 0.33
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
Query: 28 FLSWADDDAGYDEEKDYENLLNNEKLQKKLREWRRTKNQQNNNK 71
F D +A DE+K N ++ Q++LRE +R K Q N +
Sbjct: 100 FQEKTDKNAQKDEQK------NEQEEQRRLREQQRLKQNQENQE 137
>ref|NP_223560.1| putative [Helicobacter pylori J99]
Length = 524
Score = 26.6 bits (57), Expect = 0.33
Identities = 22/77 (28%), Positives = 34/77 (43%), Gaps = 7/77 (9%)
Query: 40 EEKDYENLLNNEKLQKKLREWRRTKNQQNNNKTFNTNDTNSFETIQSVIAEQLNVDAVQV 99
EEK E N EK ++ + +N Q ++KT + T ETI+ +QL + +
Sbjct: 345 EEKTKEISDNKEKAKETNSSAQSVQNTQASDKTSDNKSTTPKETIRH-FTQQLKQEIQEY 403
Query: 100 TPEAE------FVKDLG 110
P F K+LG
Sbjct: 404 KPPMSKISMDLFPKELG 420
>ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helicobacter pylori J99]
Length = 949
Score = 26.6 bits (57), Expect = 0.33
Identities = 13/48 (27%), Positives = 26/48 (54%)
Query: 51 EKLQKKLREWRRTKNQQNNNKTFNTNDTNSFETIQSVIAEQLNVDAVQ 98
EK ++KL+E ++++ N NTN TN+ + +V + + V+
Sbjct: 152 EKAKQKLQEIQKSREALNKLTQSNTNTTNNANSASNVSNAKKEISEVK 199
>ref|NP_222748.1| putative [Helicobacter pylori J99]
Length = 565
Score = 25.4 bits (54), Expect = 0.73
Identities = 23/71 (32%), Positives = 35/71 (48%), Gaps = 5/71 (7%)
Query: 45 ENLLNNEKLQKKLREWRRTKNQQNNNKTFNTNDTNSFETIQSVIAEQL---NVDAVQVTP 101
+NL +E L RE R KNQQ K +T ++++ +I + I L + A +
Sbjct: 46 DNLSLSETLDAYGRELSRLKNQQETIKA-STIESSNLNSIVNKIKSGLPFGTISAFRPFK 104
Query: 102 EAEFVKDLGAD 112
EA F+KD D
Sbjct: 105 EA-FIKDFTQD 114
>ref|NP_223130.1| putative ZINC PROTEASE [Helicobacter pylori J99]
Length = 443
Score = 24.6 bits (52), Expect = 1.2
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 91 QLNVDAVQVTPEAEFVKDLGADSDVVEL 118
Q +D +++ +A+F+ +L + SDV L
Sbjct: 368 QAELDKIKINQKADFISNLESSSDVAGL 395
>ref|NP_223699.1| 30S RIBOSOMAL PROTEIN S1 [Helicobacter pylori J99]
Length = 552
Score = 24.3 bits (51), Expect = 1.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 32 ADDDAGYDEEKDYENLLNNEKLQKK 56
ADD DEE+D+ LL E+ +K
Sbjct: 5 ADDQYFNDEEEDFAKLLEKEETLEK 29
>ref|NP_223624.1| GLYCYL-TRNA SYNTHETASE BETA CHAIN [Helicobacter pylori J99]
Length = 701
Score = 24.3 bits (51), Expect = 1.6
Identities = 30/111 (27%), Positives = 44/111 (39%), Gaps = 12/111 (10%)
Query: 42 KDYENLLNNEK-LQKKLREWRRTKNQQNNNKTFNTNDTNSFET-IQSVIAEQLNVDAVQV 99
K + L+N K QKK + K N NK N N+++ F T + + E +A
Sbjct: 577 KALKRFLDNPKNAQKKELLFSAFKRLANINKDRNPNESSGFSTSLFKELQEHALFEAFNA 636
Query: 100 TPEAEFVKDLGADSDVVELIMALEEKFGIEIPDEQAEKIVNVGDVMRYIEK 150
+ F L +E FG+ P E+ K V V D I+K
Sbjct: 637 IKTSTF----------ESLDSKIEAYFGLHAPLEEYFKSVLVMDKDIEIQK 677
>ref|NP_223406.1| putative FLAGELLIN PROTEIN [Helicobacter pylori J99]
Length = 119
Score = 23.5 bits (49), Expect = 2.8
Identities = 17/82 (20%), Positives = 40/82 (48%)
Query: 58 REWRRTKNQQNNNKTFNTNDTNSFETIQSVIAEQLNVDAVQVTPEAEFVKDLGADSDVVE 117
+E RT +++ T D + ++ +++E+LN + ++ + F + VV
Sbjct: 23 KEISRTNTINTVDESKTTIDPDQYKPKLELLSERLNEEMKRIGTDINFSYNDTIKGLVVS 82
Query: 118 LIMALEEKFGIEIPDEQAEKIV 139
+ A +K EIP ++A +++
Sbjct: 83 VKDANGDKVIREIPSKEAVELM 104
>ref|NP_222772.1| putative [Helicobacter pylori J99]
Length = 220
Score = 23.5 bits (49), Expect = 2.8
Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 45 ENLLNNE-KLQKKLREWRRTKNQQNNNKTFNTNDTNSFETIQSVIAEQ 91
ENL + + QK++ E + +K N K TN+ +T ++ + E+
Sbjct: 131 ENLTKEKTESQKQVNELKNSKQVLENEKADLTNENTKLKTDKTDLTEK 178
>ref|NP_223801.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 1237
Score = 23.1 bits (48), Expect = 3.6
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 67 QNNNKTFNTNDTNSFETIQSVIAEQLNVDAVQVTPEA 103
QN + +T+ T++F+ I S I++ ++P A
Sbjct: 946 QNKDSNVSTSLTSAFQAITSAISQGFQALQNDISPNA 982
>ref|NP_223068.1| putative [Helicobacter pylori J99]
Length = 173
Score = 23.1 bits (48), Expect = 3.6
Identities = 18/83 (21%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Query: 70 NKTFNTNDTNSFETIQSVIAEQLNVDAVQVTPEAEFVKDLGADSDVVELIMALEEKFGIE 129
NK+ D ++ + S+I ++L ++ +F+ D+ +L +A+ ++
Sbjct: 59 NKSMGLEDKDALQA--SIIKQELR----EIVENCQFLASPLFDT---QLNIAINDEVFSM 109
Query: 130 IPDEQAEKIVNVGDVMRYIEKQL 152
I D + NVG Y+E++L
Sbjct: 110 IVDNPLNLLENVGGFQAYLEEKL 132
>ref|NP_223441.1| PREPROTEIN TRANSLOCASE SUBUNIT [Helicobacter pylori J99]
Length = 865
Score = 22.7 bits (47), Expect = 4.7
Identities = 14/43 (32%), Positives = 19/43 (43%)
Query: 94 VDAVQVTPEAEFVKDLGADSDVVELIMALEEKFGIEIPDEQAE 136
++A Q T EAE +KD G V I++ DE E
Sbjct: 468 LNAKQHTKEAEIIKDAGLKGAVTIATNMAGRGVDIKLTDEVKE 510
>ref|NP_222977.1| putative [Helicobacter pylori J99]
Length = 327
Score = 22.7 bits (47), Expect = 4.7
Identities = 12/45 (26%), Positives = 24/45 (52%), Gaps = 8/45 (17%)
Query: 102 EAEFVKDLGADSDVVELIMA--------LEEKFGIEIPDEQAEKI 138
E++ +G D++ V+L ++ LEE G++ + +EKI
Sbjct: 195 ESKEEDSMGMDNEAVDLFLSEIQEDIDSLEEAIGLDSSKDNSEKI 239
>ref|NP_224085.1| THYMIDYLATE KINASE [Helicobacter pylori J99]
Length = 191
Score = 22.3 bits (46), Expect = 6.1
Identities = 9/17 (52%), Positives = 13/17 (75%)
Query: 121 ALEEKFGIEIPDEQAEK 137
AL+EKFG E+ + A+K
Sbjct: 158 ALQEKFGCEVLELDAQK 174
>ref|NP_223983.1| GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE [Helicobacter pylori J99]
Length = 330
Score = 22.3 bits (46), Expect = 6.1
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 22 GSFKRKFLSWADDDAGYDE 40
G K L+W D++ GY E
Sbjct: 300 GEKNAKVLAWYDNEMGYSE 318
>ref|NP_223721.1| putative [Helicobacter pylori J99]
Length = 223
Score = 22.3 bits (46), Expect = 6.1
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 44 YENLLNNEKLQKKLREWRRTKNQQNNNKT 72
Y++ N+E L KKL+ + + K + +K+
Sbjct: 194 YQDTKNDEDLTKKLKAYIKYKTNLSKSKS 222
>ref|NP_223644.1| putative [Helicobacter pylori J99]
Length = 465
Score = 22.3 bits (46), Expect = 6.1
Identities = 7/27 (25%), Positives = 16/27 (58%)
Query: 68 NNNKTFNTNDTNSFETIQSVIAEQLNV 94
N N NTND + ++ +A+++++
Sbjct: 249 NENTKLNTNDNEEVKKLEFELAKEVHI 275
>ref|NP_223574.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2399
Score = 22.3 bits (46), Expect = 6.1
Identities = 22/97 (22%), Positives = 40/97 (40%), Gaps = 17/97 (17%)
Query: 5 NYKEERYTERVNQGGVWGSFKRKFLSWADDDAGYDEEKDYENLLNNEKLQKKLREWRRTK 64
N + E++ Q G G+F LS K+ L +E L + + +
Sbjct: 1427 NVLSQMAMEKIKQAGGLGNFIENALS--------PLSKELPASLQDETLGQLIGQ----- 1473
Query: 65 NQQNNNKTFNTNDTNSFETIQSVIAEQLNVDAVQVTP 101
NN N++ IQ++I+++L++ VTP
Sbjct: 1474 ----NNLDDLLNNSGVMNEIQNIISQKLSIFGNFVTP 1506
>ref|NP_223417.1| putative [Helicobacter pylori J99]
Length = 185
Score = 22.3 bits (46), Expect = 6.1
Identities = 13/50 (26%), Positives = 23/50 (46%)
Query: 52 KLQKKLREWRRTKNQQNNNKTFNTNDTNSFETIQSVIAEQLNVDAVQVTP 101
K +K ++ + QQ++ KT+ D N+ E + LN+ TP
Sbjct: 25 KNSQKSQDSQNNTTQQDSPKTYTAMDLNNQEYTIMGDLDSLNISPDPNTP 74
>ref|NP_223055.1| putative [Helicobacter pylori J99]
Length = 778
Score = 22.3 bits (46), Expect = 6.1
Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 45 ENLLNNEKLQ-----KKLREWRRTKNQQNNNKTFNTNDTNSFETIQSVIAEQLNVDAVQV 99
EN+ E+L KK++ + + + ++ N + + SFETI + + +D +
Sbjct: 598 ENVTPKERLDTLVALKKIQAFYKKERERFNAEITILDLEKSFETIIQGVIFKGRIDRIDK 657
Query: 100 TPEAEFV 106
T + E +
Sbjct: 658 TADNEII 664
>ref|NP_223044.1| FLAGELLAR M-RING PROTEIN [Helicobacter pylori J99]
Length = 567
Score = 22.3 bits (46), Expect = 6.1
Identities = 10/30 (33%), Positives = 18/30 (59%)
Query: 123 EEKFGIEIPDEQAEKIVNVGDVMRYIEKQL 152
E K E DE+ +++ +GD+ + +E QL
Sbjct: 488 EVKSMFEEMDEEEDELNKLGDLRKKVEDQL 517
>ref|NP_222938.1| motility protein [Helicobacter pylori J99]
Length = 215
Score = 22.3 bits (46), Expect = 6.1
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 45 ENLLNNEKLQKKLREWRRTKNQQNNNKTFNTNDTNSFE 82
E +L+NE++QK ++E K +K N+ S E
Sbjct: 84 ERVLSNEEIQKLIKE-EEAKIDNGTSKLVQPNNGGSNE 120
>ref|NP_223274.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 3194
Score = 21.9 bits (45), Expect = 8.0
Identities = 9/17 (52%), Positives = 12/17 (69%)
Query: 74 NTNDTNSFETIQSVIAE 90
N N +SFETI S++ E
Sbjct: 1967 NLNSPDSFETIFSILKE 1983
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.311 0.131 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 176,999
Number of Sequences: 1491
Number of extensions: 8572
Number of successful extensions: 47
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 18
Number of HSP's gapped (non-prelim): 31
length of query: 153
length of database: 494,079
effective HSP length: 70
effective length of query: 83
effective length of database: 389,709
effective search space: 32345847
effective search space used: 32345847
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 45 (21.9 bits)