BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645579|ref|NP_207755.1| hypothetical protein
[Helicobacter pylori 26695]
(447 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223615.1| putative [Helicobacter pylori J99] 393 e-111
ref|NP_223614.1| putative [Helicobacter pylori J99] 72 2e-14
ref|NP_223619.1| putative [Helicobacter pylori J99] 54 6e-09
ref|NP_223788.1| putative [Helicobacter pylori J99] 37 0.001
ref|NP_223184.1| GTP-binding protein [Helicobacter pylori J99] 35 0.005
ref|NP_222774.1| putative [Helicobacter pylori J99] 34 0.007
ref|NP_222801.1| putative [Helicobacter pylori J99] 33 0.011
ref|NP_223516.1| putative [Helicobacter pylori J99] 33 0.015
ref|NP_223386.1| putative [Helicobacter pylori J99] 33 0.015
ref|NP_223164.1| UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE L... 32 0.025
ref|NP_223343.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobact... 31 0.056
ref|NP_223534.1| putative [Helicobacter pylori J99] 30 0.16
ref|NP_223422.1| putative [Helicobacter pylori J99] 29 0.28
ref|NP_223062.1| multi-drug resistance protein [Helicobacte... 28 0.36
ref|NP_224063.1| putative thiophene/furan oxidation protein... 28 0.62
ref|NP_223498.1| putative [Helicobacter pylori J99] 28 0.62
ref|NP_223808.1| putative THIOREDOXIN REDUCTASE [Helicobact... 27 0.81
ref|NP_223146.1| GLUTAMYL-TRNA SYNTHETASE [Helicobacter pyl... 27 0.81
ref|NP_222779.1| putative [Helicobacter pylori J99] 27 0.81
ref|NP_224174.1| putative [Helicobacter pylori J99] 27 1.1
ref|NP_223283.1| DNA MISMATCH REPAIR PROTEIN [Helicobacter ... 27 1.1
ref|NP_223111.1| RNA POLYMERASE SIGMA FACTOR (sigma 28) [He... 27 1.1
ref|NP_222775.1| putative [Helicobacter pylori J99] 27 1.1
ref|NP_222751.1| ATP-DEPENDENT PROTEASE,ATP-BINDING SUBUNIT... 27 1.1
ref|NP_223179.1| GLUTAMINE SYNTHETASE [Helicobacter pylori ... 27 1.4
ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [He... 26 1.8
ref|NP_224158.1| FRUCTOSE-1,6-BISPHOSPHATASE [Helicobacter ... 26 2.3
ref|NP_224091.1| SERYL-TRNA SYNTHETASE [Helicobacter pylori... 26 2.3
ref|NP_224019.1| putative [Helicobacter pylori J99] 26 2.3
ref|NP_223773.1| putative [Helicobacter pylori J99] 26 2.3
ref|NP_223375.1| putative [Helicobacter pylori J99] 26 2.3
ref|NP_223370.1| RNA POLYMERASE SIGMA-54 FACTOR [Helicobact... 26 2.3
ref|NP_223180.1| putative [Helicobacter pylori J99] 26 2.3
ref|NP_223136.1| putative [Helicobacter pylori J99] 26 2.3
ref|NP_223020.1| putative abc transporter, ATP-binding prot... 26 2.3
ref|NP_223870.1| putative DNA poymerase III subunit delta' ... 25 3.1
ref|NP_223194.1| cag island protein [Helicobacter pylori J99] 25 3.1
ref|NP_224193.1| putative [Helicobacter pylori J99] 25 4.0
ref|NP_223274.1| putative vacuolating cytotoxin (VacA) para... 25 4.0
ref|NP_223265.1| putative secretion/efflux abc transporter,... 25 4.0
ref|NP_223140.1| OLIGOPEPTIDASE [Helicobacter pylori J99] 25 4.0
ref|NP_222997.1| putative [Helicobacter pylori J99] 25 4.0
ref|NP_222780.1| putative [Helicobacter pylori J99] 25 5.2
ref|NP_223990.1| putative [Helicobacter pylori J99] 24 6.8
ref|NP_222999.1| P-AMINOBENZOATE SYNTHETASE [Helicobacter p... 24 6.8
ref|NP_222866.1| SHIKIMATE KINASE I [Helicobacter pylori J99] 24 6.8
ref|NP_223402.1| putative [Helicobacter pylori J99] 24 8.9
ref|NP_222962.1| putative [Helicobacter pylori J99] 24 8.9
>ref|NP_223615.1| putative [Helicobacter pylori J99]
Length = 226
Score = 393 bits (1009), Expect = e-111
Identities = 200/231 (86%), Positives = 207/231 (89%), Gaps = 7/231 (3%)
Query: 1 MSVNFFKGIFNDNSRAENHQDNHQNNHQVGLKERYDLIARILNARIENEGLEEYQSVLDN 60
MS+NFF F+ +NH N V LKERYDLIARILNA+ NEGLEEYQS+L N
Sbjct: 1 MSINFFNDKFSTT-------ENHHNIEPVSLKERYDLIARILNAKTSNEGLEEYQSILAN 53
Query: 61 EFLEFASGVDSLKEKEIALLTLQEIQKELQLVASYPSLFQKTIVAVGGGFSAGKSTFLNN 120
EFL+FASGVDSLKEKEIALL LQEIQKELQLVASYPSLFQKTIVAVGGGFSAGKSTFLNN
Sbjct: 54 EFLKFASGVDSLKEKEIALLMLQEIQKELQLVASYPSLFQKTIVAVGGGFSAGKSTFLNN 113
Query: 121 LLGLKLKLPEDMNPTTAIPTYCLKGKREVLMGFSQNGGMVELPHLAFDHQFLNSLGFNLK 180
LLGLKLKLPEDMNPTTAIPTYCLKG+REVLMGFSQNGGMVELPHLAFDHQFL SLGFNLK
Sbjct: 114 LLGLKLKLPEDMNPTTAIPTYCLKGEREVLMGFSQNGGMVELPHLAFDHQFLKSLGFNLK 173
Query: 181 EIMPFMLLSAPSVPFEFLCFIDTPGFNSAKQGYTGGDKEASKESLKHAKHI 231
EIMPFMLLSAPSVPFEFLCFIDTPGFN A QGYTGGDKEASKESLKHAKHI
Sbjct: 174 EIMPFMLLSAPSVPFEFLCFIDTPGFNPANQGYTGGDKEASKESLKHAKHI 224
>ref|NP_223614.1| putative [Helicobacter pylori J99]
Length = 230
Score = 72.4 bits (176), Expect = 2e-14
Identities = 32/39 (82%), Positives = 36/39 (92%)
Query: 409 RLNEVIDLFKEGIDKVFDRVSAFTWEKYKEQNDDEEDDD 447
RLNEVI LFKE +DKVFDRVSAFTWEKYK +N+DEEDD+
Sbjct: 2 RLNEVIGLFKESVDKVFDRVSAFTWEKYKAKNEDEEDDE 40
>ref|NP_223619.1| putative [Helicobacter pylori J99]
Length = 166
Score = 54.3 bits (129), Expect = 6e-09
Identities = 45/146 (30%), Positives = 66/146 (44%), Gaps = 11/146 (7%)
Query: 100 QKTIVAVGGGFSAGKSTFLNNLLGLKLKLPEDMNPTTAIPTYCLKGKREVLMGFSQNGGM 159
Q+ ++ V G FSAGKST LN LG + LP + P T++ T E + FS N
Sbjct: 18 QQLVIPVVGNFSAGKSTLLNRFLGSSV-LPTGITPETSLATELHYSANERIEAFSSNDEK 76
Query: 160 V---ELPHLAFDHQFLNSLGFNLKEIMPFMLLSAPSVPFEFLCFIDTPGFNSAKQGYTGG 216
EL +F+ N+ ++ ++ S P L F+D PGF+S +T
Sbjct: 77 TESFELNEQSFEAIKENAAKYSYLKVYLNNEALKDSAP---LVFVDMPGFDSPISSHT-- 131
Query: 217 DKEASKESLKHAKHILWLISCESGEI 242
A E L+ H + L S E G +
Sbjct: 132 --HAILEYLERGVHFVILTSVEEGNL 155
>ref|NP_223788.1| putative [Helicobacter pylori J99]
Length = 433
Score = 36.6 bits (83), Expect = 0.001
Identities = 38/145 (26%), Positives = 65/145 (44%), Gaps = 16/145 (11%)
Query: 303 RYQEY-KEFSEKSKVFNSLEEFLMKLNQRSEKQNEILGYLYEVHSMYEKAIEQDANQFKR 361
+YQ Y K +K + + + KQ L E + E+A + N F
Sbjct: 53 QYQSYFKNLEQKEEALKERAKEQQAQFDEAVKQASALALQDERAKIIEEARK---NAFLE 109
Query: 362 YQSELHSVRLDLMQKGFDDFSDKIFR------RIENLEKEFSEQE-RSKRESLARLNEVI 414
Q L +L+QK D+ S ++ IE L++E +E E R K E+ +LNE +
Sbjct: 110 QQKGL-----ELLQKELDEKSKQVQELHQKEAEIERLKRENNEAESRLKAENEKKLNEKL 164
Query: 415 DLFKEGIDKVFDRVSAFTWEKYKEQ 439
+L +E I+K + +++ +EQ
Sbjct: 165 ELEREKIEKALHEKNELKFKQQEEQ 189
>ref|NP_223184.1| GTP-binding protein [Helicobacter pylori J99]
Length = 301
Score = 34.7 bits (78), Expect = 0.005
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 261 FIVLSRADRRTKRQLEEVVIKIKETLKDNGIEFLGIGAYSSTRYQEYKEFSEKSKVFNSL 320
FI R D+ R + E + K + NG+ IG + + QE E KVF +L
Sbjct: 219 FIEEERIDKVYARIIVEKESQKKIVIGKNGVNIKRIGTNARLKMQEVGE----KKVFLNL 274
Query: 321 EEFLMKLNQRSEKQNEILGYLYE 343
+ K + EK + LGY+Y+
Sbjct: 275 QVIAQKSWSKEEKSLQKLGYIYQ 297
>ref|NP_222774.1| putative [Helicobacter pylori J99]
Length = 327
Score = 34.3 bits (77), Expect = 0.007
Identities = 41/170 (24%), Positives = 75/170 (44%), Gaps = 12/170 (7%)
Query: 276 EEVVIKIKETLKDNGIEFLGIGAYSSTRYQEYKEFSEKSKVFNS----LEEFLMKLNQRS 331
EE+ +I E L+D E L Y + E K+ +++ + N ++ L K N
Sbjct: 16 EELEARISE-LEDENTELLREREYLAAETSELKDANDQLRQKNDKLFITKDKLTKENTEL 74
Query: 332 EKQNEILGYLYEVHSMYEKAIEQDANQFKRYQSELHSVRLDLMQKGFDDFSDKIFRRIEN 391
+NE L + Q+ N+ + ++EL + + D++ K R E
Sbjct: 75 FAENESLSVKISGLEHSNDQLWQNNNKLTKEKAELKTEK-DILAKENTRLLAARDRLTEE 133
Query: 392 LEKEFSEQERSKRESLARLNEVIDLFKEG------IDKVFDRVSAFTWEK 435
+ +E+ER KRE+ +++ +L KE DK+ +V+A T E+
Sbjct: 134 KRELTTEKERLKRENTELTHKITELTKENKALTTENDKLNHQVTALTNER 183
Score = 25.8 bits (55), Expect = 2.3
Identities = 24/106 (22%), Positives = 40/106 (37%), Gaps = 11/106 (10%)
Query: 319 SLEEFLMKLNQRSEKQNEILGYLYEVHSMYEKAIEQDANQFKRYQSELHSVRLDLMQKGF 378
SLE +L Q E N L E ++ + +E++ + K + LDL
Sbjct: 227 SLENTNNQLRQALENSNVQLAQAKEKIAIEKSELEREIARLKSLEGMEAKSDLDLHN--- 283
Query: 379 DDFSDKIFRRIENLEKEFSEQERSKRESLARLNEVIDLFKEGIDKV 424
RR+ + ++ Q R E L E +D E + K+
Sbjct: 284 --------RRLASANEDLKRQNRKLEEENIALKERVDGLNEQLSKL 321
Score = 25.8 bits (55), Expect = 2.3
Identities = 39/191 (20%), Positives = 77/191 (39%), Gaps = 30/191 (15%)
Query: 264 LSRADRRTKRQLEEVVIKIKETLKDNGIEFLGIGAYSSTRYQEYKEFSEKSKVFNSLEEF 323
L+ R KR+ E+ KI E K+N K + ++ N +
Sbjct: 137 LTTEKERLKRENTELTHKITELTKEN------------------KALTTENDKLN--HQV 176
Query: 324 LMKLNQRSEKQNEILGYLYEVHSMYEKAIEQDANQFKRYQSELHSVRLDLMQKGFDDFSD 383
N+R + E L + H EK + +R +L +L+ QK ++ ++
Sbjct: 177 TALTNERDSLEQE-RARLQDAHGFLEKRCTNLEKENQRLTDKLK--QLESAQKSLENTNN 233
Query: 384 KIFRRIENLEKEFSEQ------ERSKRE-SLARLNEVIDLFKEGIDKVFDRVSAFTWEKY 436
++ + +EN + ++ E+S+ E +ARL + + + + +R A E
Sbjct: 234 QLRQALENSNVQLAQAKEKIAIEKSELEREIARLKSLEGMEAKSDLDLHNRRLASANEDL 293
Query: 437 KEQNDDEEDDD 447
K QN E+++
Sbjct: 294 KRQNRKLEEEN 304
>ref|NP_222801.1| putative [Helicobacter pylori J99]
Length = 450
Score = 33.5 bits (75), Expect = 0.011
Identities = 33/142 (23%), Positives = 68/142 (47%), Gaps = 15/142 (10%)
Query: 242 IHEDDLEYLQELYEEGKQVFIVLSRADRRTKRQLEEVVIKIKETLKDNGIE----FLGIG 297
+ +++ E++++ YE K++F+ L D++ ++LE VI L NGI+ +G G
Sbjct: 103 VGDEECEFMKKRYESFKEIFVGLEEFDKQKIKELEPNVI-----LGANGIDRHENIIGHG 157
Query: 298 ---AYSSTRYQEYKE--FSEKSKVFNSLEEFLMKLNQRSEKQNEILGYLYE-VHSMYEKA 351
+S+ + + E E K+ + + FL ++ EK+N+ + E +Y K
Sbjct: 158 YRKDWSTMNFAKLSENFVEEALKLKPNNQVFLNFKVKKIEKRNDTYAVISEDAEEVYAKF 217
Query: 352 IEQDANQFKRYQSELHSVRLDL 373
+ +A + ++ LDL
Sbjct: 218 VLVNAGSYALPLAQSMGYGLDL 239
>ref|NP_223516.1| putative [Helicobacter pylori J99]
Length = 218
Score = 33.1 bits (74), Expect = 0.015
Identities = 33/137 (24%), Positives = 57/137 (41%), Gaps = 10/137 (7%)
Query: 296 IGAYSSTRYQEYKEFSEKSKVFNSLEEFLMKLNQRS--EKQNEILGYLYEVHSMYEKAIE 353
I T+ Q+YK + ++ E L N + ++ E+ LY+++ +
Sbjct: 46 IAYLGDTKLQDYKHEQTRERITQIYNEVLESPNNIALQKRLKEVAPELYDLYQFARASER 105
Query: 354 QDANQFKRYQSELHSVRLDLMQKGFDDFSDKIFRRIEN-LEKEFSEQERSKRESLARLNE 412
DAN+FKR + + K F +S R +N LEK +E S + + L E
Sbjct: 106 NDANEFKRLSQSSNEI-----VKAFAKYSYASLSRDKNLLEKSPILKEMSALQEVNLLYE 160
Query: 413 VIDLFKEGIDKVFDRVS 429
+ K+ I K +S
Sbjct: 161 --ENSKDAIKKAHQSLS 175
>ref|NP_223386.1| putative [Helicobacter pylori J99]
Length = 569
Score = 33.1 bits (74), Expect = 0.015
Identities = 52/233 (22%), Positives = 94/233 (40%), Gaps = 32/233 (13%)
Query: 201 IDTPGFNSAK-----QGYTGGDKEASKESLKHAKHILWLISCESG--EIHEDDLEYLQEL 253
+DTPG K G T K+ +K+ + A IL+ ++ + E H+DDL +L
Sbjct: 107 VDTPGLFGFKVKTHDSGKTERYKDITKKYISEAHLILYALNPSNPIKESHKDDLNWLFRT 166
Query: 254 YEEGKQVFIVLSRADRRTKRQLEEVVIKIKETLKDNGIEFLGIGAYSSTRYQEYKEFSEK 313
+ V+SR D + EE K + K+N R E SE+
Sbjct: 167 LNLLSRTIFVISRFDEEADIEDEEDYNKRFKIKKEN----------IQNRLDELISLSEE 216
Query: 314 SK-----VFNSLEEFLMKLNQRSEKQNEI--LGYLYEVHSMYEKAIEQDANQFKRYQSEL 366
K V + F + + + Q E L ++ + +K I+++ + +
Sbjct: 217 EKESLMIVAVAANPFDLGVEHWLKHQEEFQKLSHIKALQDATQKKIKENGGKLTIIEEAK 276
Query: 367 HSVRLDLM-------QKGFDDFSDKIFRRIENLEKEFSE-QERSKRESLARLN 411
SV D++ ++ D + ++ + LEK E Q+ +K S AR++
Sbjct: 277 KSVIQDVVYRQMPPAKQALQDINREMEYLNKTLEKRRKEIQDLNKEISQARIH 329
>ref|NP_223164.1| UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE [Helicobacter
pylori J99]
Length = 422
Score = 32.3 bits (72), Expect = 0.025
Identities = 24/81 (29%), Positives = 35/81 (42%), Gaps = 5/81 (6%)
Query: 242 IHEDDLEYLQELYEEGKQVFIVLSRA-----DRRTKRQLEEVVIKIKETLKDNGIEFLGI 296
+ E+ Y LY G I+ + A + +LE+ V +IK L N + L
Sbjct: 338 LFEEFKNYKISLYAIGSSASIIQALALEFNVSCQVCLKLEKAVQEIKSVLLQNEVALLSP 397
Query: 297 GAYSSTRYQEYKEFSEKSKVF 317
A S ++ YKE EK K F
Sbjct: 398 SAASLDQFSSYKERGEKFKAF 418
>ref|NP_223343.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 248
Score = 31.2 bits (69), Expect = 0.056
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 9/82 (10%)
Query: 127 KLPEDMNPTTAIPTYCLKGKREVLMGFSQNGGMVELPHLAFDHQFLNSL-GFNLKEIMPF 185
K P+D++ + IP + + E+ F Q G ++ LP L D + L + + P
Sbjct: 162 KTPDDVSLSVLIPAFMIS---ELKTAF-QIGFLLYLPFLVIDMVISSILMAMGMMMLPPV 217
Query: 186 MLLSAPSVPFEFLCFIDTPGFN 207
M+ S+PF+ L FI GFN
Sbjct: 218 MI----SLPFKILVFILVDGFN 235
>ref|NP_223534.1| putative [Helicobacter pylori J99]
Length = 614
Score = 29.6 bits (65), Expect = 0.16
Identities = 41/182 (22%), Positives = 70/182 (37%), Gaps = 26/182 (14%)
Query: 180 KEIMPFMLLSAPSVPFEFLCFIDTPGFNSAKQGYTGGDKEASKESLKHAKHILWLISCES 239
KEI L S + F C+ID N + + ++E LK+AK L + +S
Sbjct: 414 KEIALEKLKSDNKLYFSKQCWIDEVDGNGNRFIFYAFGGRENQEELKNAKQKLNALGVKS 473
Query: 240 GEIHEDDLEYLQELYEEGKQVFIVLSRADRRTKRQLEEVVIKIKETLKDNGIEFLGIGAY 299
+I + L L + + + L A KR L + +E++KD
Sbjct: 474 KKIIAQH-QSLNHLVKNNQVIMEKLKNATEEIKRSLMQ-----QESVKD----------- 516
Query: 300 SSTRYQEYKEFSEKSKVFNSLEEFLMKLNQRSEKQNEILGYLYEVHSMYEKAIEQDANQF 359
Y E+ ++ K+ + L K+N NE L + + ++ A N F
Sbjct: 517 ---AYSEFVFALKRLKILKAQMLELQKIN------NECYAKLISIENSFQHASITTKNPF 567
Query: 360 KR 361
K+
Sbjct: 568 KQ 569
>ref|NP_223422.1| putative [Helicobacter pylori J99]
Length = 182
Score = 28.9 bits (63), Expect = 0.28
Identities = 20/72 (27%), Positives = 37/72 (50%), Gaps = 4/72 (5%)
Query: 373 LMQKGFDDFSDKIFRRIENLEKEFSEQERSKRESLARLNEVIDLFKEGIDKVFDRVSAFT 432
+M K F D S IF+ + + E E+ RES+ +L ++++ ++VF+R T
Sbjct: 59 VMSKTFYDVSLTIFKEAKLARQRRIEIEKECRESIRQL----EMYQNQFNEVFERYFHGT 114
Query: 433 WEKYKEQNDDEE 444
+ + E D+ E
Sbjct: 115 IKFFNESFDELE 126
>ref|NP_223062.1| multi-drug resistance protein [Helicobacter pylori J99]
Length = 551
Score = 28.5 bits (62), Expect = 0.36
Identities = 22/77 (28%), Positives = 38/77 (48%), Gaps = 1/77 (1%)
Query: 48 NEGLEEYQSVLDNEFLEFASGVDSLKEKEIALLTLQEIQKELQLVASYPSLFQKTIVAVG 107
+E LE +++D E L + +++ K++ L E Q+ L Q IVA+
Sbjct: 311 HEILEREPAIIDGE-LTLDDAIHTIEFKKVWLAYALEDQERYVLSDINLKFQQNEIVALK 369
Query: 108 GGFSAGKSTFLNNLLGL 124
G +GKS+ +N +L L
Sbjct: 370 GESGSGKSSLVNLILRL 386
>ref|NP_224063.1| putative thiophene/furan oxidation protein [Helicobacter pylori
J99]
Length = 461
Score = 27.7 bits (60), Expect = 0.62
Identities = 34/137 (24%), Positives = 52/137 (37%), Gaps = 3/137 (2%)
Query: 201 IDTPGFNSAKQGYTGGDKEASKESLKHAKHILWLISCESGEIHEDDLEYLQELYEEGKQV 260
IDT G + E S +SL++ IL + S + ++D + L K
Sbjct: 277 IDTAGIRESADEIERLGIEKSLKSLENCDIILGVFDL-SKPLEKEDFNLMDTLNRTKKPC 335
Query: 261 FIVLSRADRRTKRQLEEVVIKIKETLKDNGIEFLGIGAYSSTRYQEYKEFSEKSKVFNSL 320
+VL++ D K +LE + +K L A Q+ EF K N L
Sbjct: 336 IVVLNKNDLAPKLELEILKSYLKIPYSILETNTLNSKACLKDLSQKISEFFPKLDTQNKL 395
Query: 321 EEFLMKLNQRSEKQNEI 337
L L Q + +N I
Sbjct: 396 --LLTSLAQTTALENAI 410
>ref|NP_223498.1| putative [Helicobacter pylori J99]
Length = 245
Score = 27.7 bits (60), Expect = 0.62
Identities = 17/49 (34%), Positives = 26/49 (52%), Gaps = 1/49 (2%)
Query: 296 IGAYSSTRYQEYKEF-SEKSKVFNSLEEFLMKLNQRSEKQNEILGYLYE 343
+ A +T +EYKE SEK S +EFL N Q+++L ++ E
Sbjct: 107 LSAKDNTPLKEYKELLSEKLIHAKSSQEFLNTANMLLSLQSQVLSFVVE 155
>ref|NP_223808.1| putative THIOREDOXIN REDUCTASE [Helicobacter pylori J99]
Length = 324
Score = 27.3 bits (59), Expect = 0.81
Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 16/96 (16%)
Query: 44 ARIENEGLEEYQSVLDNEFLEFASGVDSLKEKEIALLTLQEIQKELQLVASYPSLFQKTI 103
+RI + + Q VLDN L+ GVD I L Q ++ + F + +
Sbjct: 197 SRINEDNAKNLQEVLDNNTLKSKLGVD------IESLEEDNTQIKVNFTDNTSESFDRLL 250
Query: 104 VAVGGGFSAGKSTFLNNLLGLKLKLPEDMNPTTAIP 139
A+GG ST L L+L +P+T IP
Sbjct: 251 YAIGG------STPLEFFKRCSLEL----DPSTNIP 276
>ref|NP_223146.1| GLUTAMYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 463
Score = 27.3 bits (59), Expect = 0.81
Identities = 19/61 (31%), Positives = 25/61 (40%)
Query: 253 LYEEGKQVFIVLSRADRRTKRQLEEVVIKIKETLKDNGIEFLGIGAYSSTRYQEYKEFSE 312
L+ Q L D R E I E K G+E G Y S R++ YKE+ +
Sbjct: 29 LFARANQGKFFLRIEDTDLSRNSIEAANAIVEAFKWVGLEHDGEILYQSKRFEIYKEYIQ 88
Query: 313 K 313
K
Sbjct: 89 K 89
>ref|NP_222779.1| putative [Helicobacter pylori J99]
Length = 86
Score = 27.3 bits (59), Expect = 0.81
Identities = 20/96 (20%), Positives = 44/96 (45%), Gaps = 12/96 (12%)
Query: 324 LMKLNQRSEKQNEILGYLYEVHSMYEKAIEQDANQFKRYQSELHSVRLDLMQKGFDDFSD 383
+ ++ +E+ E +G+L +++ + ++ N + L S + D D
Sbjct: 1 MSRVQMDTEEVREFVGHL----ERFKELLNEEVNSLNGHFHNLESWQ--------DARRD 48
Query: 384 KIFRRIENLEKEFSEQERSKRESLARLNEVIDLFKE 419
K ++NL+ F+E + +E +A L E I + +E
Sbjct: 49 KFSEVLDNLKGTFNEFNEAAQEQIAWLKERIRVLEE 84
>ref|NP_224174.1| putative [Helicobacter pylori J99]
Length = 312
Score = 26.9 bits (58), Expect = 1.1
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 146 KREVLMGFSQNGGMVELPHLAFDHQFLN 173
K+ L+G+S N GM PHL ++ +FL+
Sbjct: 232 KKGQLIGYSGNTGMSTGPHLHYEVRFLD 259
>ref|NP_223283.1| DNA MISMATCH REPAIR PROTEIN [Helicobacter pylori J99]
Length = 762
Score = 26.9 bits (58), Expect = 1.1
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 9/115 (7%)
Query: 307 YKEFSEKSKVF----NSLEEFLMKLNQRSE---KQNEIL--GYLYEVHSMYEKAIEQDAN 357
Y E EK V ++LE L + N+ E K+ E L +L E+ E +
Sbjct: 509 YGEDKEKLNVLIENSSTLERELKQKNEHLENALKEQEDLKNAWLLEMEKQKEIFHHKKLE 568
Query: 358 QFKRYQSELHSVRLDLMQKGFDDFSDKIFRRIENLEKEFSEQERSKRESLARLNE 412
K YQ L+ ++ ++ K +I + E L K ++QE + + ++NE
Sbjct: 569 LEKSYQQALNILKSEVASKDTSSMHKEIHKASEILNKHKTDQEIPQIITSFQINE 623
>ref|NP_223111.1| RNA POLYMERASE SIGMA FACTOR (sigma 28) [Helicobacter pylori J99]
Length = 255
Score = 26.9 bits (58), Expect = 1.1
Identities = 44/180 (24%), Positives = 72/180 (39%), Gaps = 23/180 (12%)
Query: 172 LNSLGFNLKEIMPFMLLSAPSVPFEFLCFIDTPGF--------NSAKQGYTGGDKEASKE 223
+ ++ F LKE +P S+ F L I T ++ + G K
Sbjct: 49 VRAMAFRLKERLP------SSIDFNDLVSIGTEELIKLARRYESALNDSFWGYAKTRVNG 102
Query: 224 SLKHAKHILWLISCESGEIHED-DLEYLQELYEEGKQVFIVLSRADRRTKRQLEEVVIKI 282
++ L +IS S ++ + D+E + L E GK+ +D L E + KI
Sbjct: 103 AMLDYLRSLDVISRSSRKLIKSIDIEITKYLNEHGKEP------SDEHLAEALGENIEKI 156
Query: 283 KETLKDNGIEFLGIGAYSSTRYQEYKEFSEKSKVFNSLEEFLMKLNQRSEKQNEILGYLY 342
+E + I L + E E ++K + LE LNQ SE++ +IL LY
Sbjct: 157 REAKTASDIYAL-VPIDEQFNAIEQDEITQKIEAEELLEHIQKVLNQMSERE-QILIQLY 214
>ref|NP_222775.1| putative [Helicobacter pylori J99]
Length = 143
Score = 26.9 bits (58), Expect = 1.1
Identities = 24/87 (27%), Positives = 42/87 (47%), Gaps = 13/87 (14%)
Query: 7 KGIFNDNSRAENHQDNHQNNHQVGLKERYDLIARILNARIENEGLEEYQSVLDNEFLEFA 66
K FN+ S N +D ++ K+ R+ +A + NE Y S + +FLE
Sbjct: 27 KAAFNEKSEP-NFKDEVSEEDKIKFKQAL----RVFHAIVNNETSLRYLSDENQKFLE-- 79
Query: 67 SGVDSLKEKEIALLTLQEIQKELQLVA 93
D + K+I T ++I+K L++V+
Sbjct: 80 ---DLAQAKKI---TNEQIEKTLEIVS 100
>ref|NP_222751.1| ATP-DEPENDENT PROTEASE,ATP-BINDING SUBUNIT [Helicobacter pylori
J99]
Length = 742
Score = 26.9 bits (58), Expect = 1.1
Identities = 13/37 (35%), Positives = 20/37 (53%), Gaps = 5/37 (13%)
Query: 282 IKETLKDNGIEFLGIGAYSSTRYQEYKEFSEKSKVFN 318
+K L D ++ LG +T ++EY+ EK K FN
Sbjct: 298 LKPVLTDGSLKCLG-----ATTFEEYRSVFEKDKAFN 329
>ref|NP_223179.1| GLUTAMINE SYNTHETASE [Helicobacter pylori J99]
Length = 481
Score = 26.6 bits (57), Expect = 1.4
Identities = 15/41 (36%), Positives = 23/41 (55%), Gaps = 3/41 (7%)
Query: 345 HSMYEKAIEQDANQFKRYQSELHSVRL---DLMQKGFDDFS 382
H M+++ I DA+ FK +Q HS + DL++ D FS
Sbjct: 50 HDMFKEGIPFDASSFKGWQGIEHSDMILTPDLVRYFIDPFS 90
>ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [Helicobacter pylori J99]
Length = 681
Score = 26.2 bits (56), Expect = 1.8
Identities = 17/38 (44%), Positives = 21/38 (54%), Gaps = 3/38 (7%)
Query: 39 ARILNARIENEGLEEYQSVLDNEFLEFASGVDSLKEKE 76
A+ LNA + + EE Q VLD E G D LKEK+
Sbjct: 125 AKKLNAIDKIKNTEEKQKVLDE---ELEDGYDFLKEKD 159
Score = 25.4 bits (54), Expect = 3.1
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 382 SDKIFRRIENLEKEFSEQERSKRESLARLNEVID 415
S+K +R+E +++ F +++K+E L L ID
Sbjct: 268 SEKDKKRVEKVQESFKALDKAKKEWLKALEAPID 301
>ref|NP_224158.1| FRUCTOSE-1,6-BISPHOSPHATASE [Helicobacter pylori J99]
Length = 290
Score = 25.8 bits (55), Expect = 2.3
Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 20/99 (20%)
Query: 306 EYKEFSEKSKVFNSLEEFLMKLNQRSEKQNEILGYLYEVHSMYEKAIEQDANQFKRYQSE 365
+YK F K K N + E + L + +K EIL + DA + + ++
Sbjct: 2 DYKRF--KGKHANIVIEIISLLEKGVKKAQEILE-------------KPDAGSYTQLENS 46
Query: 366 LHS--VRLDLMQKGFDDFSDKIFRRIENLEKEFSEQERS 402
++ DL D F ++ F +EN++ FSE++ +
Sbjct: 47 SGDTPIKADL---ALDKFLEETFLSLENVKSVFSEEKET 82
>ref|NP_224091.1| SERYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 415
Score = 25.8 bits (55), Expect = 2.3
Identities = 21/72 (29%), Positives = 36/72 (49%), Gaps = 6/72 (8%)
Query: 24 QNNHQVG--LKERYDLIARILNARIENEGLEEYQSVLDNEF-LEFASGVDS---LKEKEI 77
+ NH + L+ + IA IE EGL+ +Q+ + EF ++ A +D+ KE E
Sbjct: 20 KRNHAMDDELERLREAIAHYKKQLIELEGLQAFQNKVSKEFGIKMAQKMDTSDLKKELEN 79
Query: 78 ALLTLQEIQKEL 89
+ L E+ K +
Sbjct: 80 NKIKLNELSKSV 91
>ref|NP_224019.1| putative [Helicobacter pylori J99]
Length = 314
Score = 25.8 bits (55), Expect = 2.3
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 10/82 (12%)
Query: 236 SCESGEIHEDDLEYLQELYEEGKQVFIVLSRADRRTKRQLEEVVIKIKETLKDNGIEFLG 295
S E+G I + D ++++ YE I+ D ++I + L D G
Sbjct: 177 SMENGSISDMD-DFVKWFYEHIALTRIICFEQDS---------AMQIFQVLNDRGQPLSP 226
Query: 296 IGAYSSTRYQEYKEFSEKSKVF 317
I S+ QE K+ SEK K F
Sbjct: 227 IDILKSSLMQEIKQDSEKRKDF 248
>ref|NP_223773.1| putative [Helicobacter pylori J99]
Length = 263
Score = 25.8 bits (55), Expect = 2.3
Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 15/98 (15%)
Query: 305 QEYKEFSEKS--KVFNSLEEFLMKLNQRSEK-----QNEILGYLYEVHSMYE-------- 349
+E KE E+S +F+SL +F K ++ ++K + E L E + +
Sbjct: 80 EEPKEEPEESLEDIFSSLNDFQEKTDKNAQKDEQKNEQEEQRRLREQQRLKQNQENQEML 139
Query: 350 KAIEQDANQFKRYQSELHSVRLDLMQKGFDDFSDKIFR 387
K ++Q+ NQF + + + LDL D +K ++
Sbjct: 140 KGLQQNLNQFTQKLESVKNKTLDLQIPKQDGVDEKAYQ 177
>ref|NP_223375.1| putative [Helicobacter pylori J99]
Length = 140
Score = 25.8 bits (55), Expect = 2.3
Identities = 16/67 (23%), Positives = 30/67 (43%), Gaps = 1/67 (1%)
Query: 335 NEILGYLYEVHSMYEKAIEQDANQFKRYQSELHSVRLDLM-QKGFDDFSDKIFRRIENLE 393
NE + Y EV + +DA +F+ S + L M ++ F +++ + +E
Sbjct: 41 NEAIDYRMEVSKRLKALSAEDAKKFRANFSRIARKNLSKMSEEDFKKMREEVRKELEEKT 100
Query: 394 KEFSEQE 400
K S +E
Sbjct: 101 KGLSAEE 107
>ref|NP_223370.1| RNA POLYMERASE SIGMA-54 FACTOR [Helicobacter pylori J99]
Length = 414
Score = 25.8 bits (55), Expect = 2.3
Identities = 32/148 (21%), Positives = 64/148 (42%), Gaps = 18/148 (12%)
Query: 252 ELYEEGKQVFIVLSRADRRTKRQLEEVVIKIKETLKD-NGIEFLGIGAYSSTRYQEYKEF 310
ELYEE +++ + L + +K E +KI ++ K+ IEFL ++ E
Sbjct: 169 ELYEETRKIILNLEKHHEFSKDFYYEKALKILKSFKNPPAIEFL----------EKEIEV 218
Query: 311 SEKSKVFNSLEEFLMKLNQRSE-----KQNEILGYLYEVHSMYEKAIEQDANQFKRYQSE 365
+ + E +++LN S ++N Y + E DA ++ +
Sbjct: 219 IPELFILEVDNEMIVRLNDESYPTISLEENRFKDSDYLKEKLKEAKDLIDALNLRK--AT 276
Query: 366 LHSVRLDLMQKGFDDFSDKIFRRIENLE 393
++ + L L++ +D F K R ++ L+
Sbjct: 277 IYKIGLMLLEYQYDFFKGKELRPLKLLD 304
>ref|NP_223180.1| putative [Helicobacter pylori J99]
Length = 706
Score = 25.8 bits (55), Expect = 2.3
Identities = 21/71 (29%), Positives = 38/71 (52%), Gaps = 8/71 (11%)
Query: 374 MQKGFDDFSDKIFRRIENLEKEFSEQERSKRESLARLNEVIDLFKEGIDKVFDRVSAFTW 433
M+KGF S K+ + +++LE F E+E KR S +++D + + + A T
Sbjct: 502 MEKGFKQSSLKLNKNLKDLE-PFGEKEIEKRAS-----DLVDWALK--IWTYPILEAETL 553
Query: 434 EKYKEQNDDEE 444
E+YK + + +E
Sbjct: 554 EEYKPKKEKKE 564
>ref|NP_223136.1| putative [Helicobacter pylori J99]
Length = 255
Score = 25.8 bits (55), Expect = 2.3
Identities = 25/123 (20%), Positives = 51/123 (41%), Gaps = 31/123 (25%)
Query: 293 FLGIGAYSSTRYQEYKEFSEKSKVFNSLEEFLMKLNQRSEKQNEILGYLYEVHSMYEKAI 352
FL +GA+ Q++ E + + FNS+E ++
Sbjct: 158 FLDVGAFLQIDNQDFNELYDNFEHFNSIE--------------------------IPMSL 191
Query: 353 EQDANQFKRYQSELHSVRLDLMQKGFDDFSDKIFRRIENLEKEFSEQERSKRESLARLNE 412
E+ N F + + H+ DL +K D S + ++ N K +SEQ+ + +A ++
Sbjct: 192 EEAKNLF---EIQTHTTMQDLEKKAL-DLSAPYYHKM-NDNKRYSEQDFISLKKIALASQ 246
Query: 413 VID 415
+++
Sbjct: 247 LLE 249
>ref|NP_223020.1| putative abc transporter, ATP-binding protein [Helicobacter pylori
J99]
Length = 233
Score = 25.8 bits (55), Expect = 2.3
Identities = 11/24 (45%), Positives = 16/24 (65%)
Query: 102 TIVAVGGGFSAGKSTFLNNLLGLK 125
T A+ G AGKST +N +LG++
Sbjct: 28 TSTAIIGTNGAGKSTLINTILGIR 51
>ref|NP_223870.1| putative DNA poymerase III subunit delta' [Helicobacter pylori J99]
Length = 218
Score = 25.4 bits (54), Expect = 3.1
Identities = 18/59 (30%), Positives = 29/59 (48%), Gaps = 4/59 (6%)
Query: 360 KRYQSELHSVRLDLMQKGFDDFSDKIFRRIENLEKEFSEQERSKRESLARLNEVIDLFK 418
KR + L + LDL + D I+ ++NL+KE + ++RE + L E I K
Sbjct: 122 KRQKIPLKPLDLDLSKLDLKD----IYAFLKNLDKENFDSRENQRERIESLLESIHRHK 176
>ref|NP_223194.1| cag island protein [Helicobacter pylori J99]
Length = 1819
Score = 25.4 bits (54), Expect = 3.1
Identities = 35/170 (20%), Positives = 73/170 (42%), Gaps = 24/170 (14%)
Query: 219 EASKESLKHA--KHILWLISCESGEIHEDDLEYLQELYEEGKQVFIVLSRADRRTKRQLE 276
+A K+ LK+A ++ C G E+ L+YLQE E+ + +R D KR+ +
Sbjct: 1281 KAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEE-KRKCQ 1339
Query: 277 EVVIKIKETLKDNGIEFLGIGAYSSTRYQEYKEFSEKSKVFNSLEEFLMKLNQRSEKQ-- 334
+ + + +++ + Q + K++ + E L L+ ++++
Sbjct: 1340 NLYSDLIQEIQNK-------------KAQNKQNQLSKTERLHQASECLDNLDDPTDQEAI 1386
Query: 335 NEILGYLYEVHSMYEKAIEQDANQFKRYQSELHSVRLDLMQKGFDDFSDK 384
+ L L + I++ A++ R S+L S +K FD+ + K
Sbjct: 1387 EQCLEGLSDSERALILGIKRQADEVDRIYSDLRS------RKTFDNMAAK 1430
>ref|NP_224193.1| putative [Helicobacter pylori J99]
Length = 208
Score = 25.0 bits (53), Expect = 4.0
Identities = 11/19 (57%), Positives = 13/19 (67%)
Query: 108 GGFSAGKSTFLNNLLGLKL 126
G + GKSTF+N LLG L
Sbjct: 31 GRSNVGKSTFINTLLGKNL 49
>ref|NP_223274.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 3194
Score = 25.0 bits (53), Expect = 4.0
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 18/98 (18%)
Query: 26 NHQVGLKERYDLIARILNARIENEGLEEYQSVLDNEFLEFASGVDSLKEKEIALLTLQEI 85
N+ +G+ + I ILN++ + E N L + +D +K KEI + L++I
Sbjct: 2187 NNLLGVSAFKNAIMEILNSKTVGDVFGE------NGLL---NALDPVKRKEIDQMLLEQI 2237
Query: 86 QKELQLVASYPSLFQKTIVAVGGGFSAGKSTFLNNLLG 123
Q ++ S F+K IV G F+NN G
Sbjct: 2238 Q-------AHSSGFEKFIVKTLG--IENVENFINNWYG 2266
>ref|NP_223265.1| putative secretion/efflux abc transporter, ATP-binding protein
[Helicobacter pylori J99]
Length = 589
Score = 25.0 bits (53), Expect = 4.0
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 97 SLFQKTIVAVGGGFSAGKSTFLNNLLG 123
SL I A+ G ++GKST +N LLG
Sbjct: 369 SLHSNKIYALVGKNASGKSTLINLLLG 395
>ref|NP_223140.1| OLIGOPEPTIDASE [Helicobacter pylori J99]
Length = 578
Score = 25.0 bits (53), Expect = 4.0
Identities = 10/41 (24%), Positives = 21/41 (50%)
Query: 348 YEKAIEQDANQFKRYQSELHSVRLDLMQKGFDDFSDKIFRR 388
Y +A+E+ K + E H + +++G+ D K F++
Sbjct: 296 YSQALEEVLKTLKAFSPEFHKIASKAIKEGWVDSHPKDFKQ 336
>ref|NP_222997.1| putative [Helicobacter pylori J99]
Length = 100
Score = 25.0 bits (53), Expect = 4.0
Identities = 16/45 (35%), Positives = 24/45 (52%), Gaps = 3/45 (6%)
Query: 115 STFLNNLLGLKLKLP--EDMNPTTAIPTYCLKGKREVLMGFSQNG 157
S L+ LG+ LK+ + +P P YC K ++E+L SQ G
Sbjct: 24 SDLLDKRLGIALKIALIKQESPQEN-PIYCPKREQEILKRLSQRG 67
>ref|NP_222780.1| putative [Helicobacter pylori J99]
Length = 500
Score = 24.6 bits (52), Expect = 5.2
Identities = 35/152 (23%), Positives = 57/152 (37%), Gaps = 34/152 (22%)
Query: 7 KGIFNDNSRAENHQDNHQNNHQVGLKERYDLIARILNARIENEGLEEYQSVLDNEF---L 63
K +FN+ R ++ ++N + LK++ I + + N+ LE + + EF L
Sbjct: 202 KSVFNE--RLKDLRENFSASLYADLKDK------IHHNALSNDDLERMIAFREQEFEKSL 253
Query: 64 EFASGVDSLKEKEIALLTLQEIQKELQLVASYPSLFQKTIVAVGGGFSAGKSTFLNNLLG 123
E G S E L I KE +L S L +L+
Sbjct: 254 EDWMGAYSYDENPNDELDRMAISKEQELEKS-----------------------LEDLMP 290
Query: 124 LKLKLPEDMNPTTAIPTYCLKGKREVLMGFSQ 155
L +P T C+K +E L GF++
Sbjct: 291 SVLGVPSYNESLTLAKNRCVKNFKEALEGFTE 322
>ref|NP_223990.1| putative [Helicobacter pylori J99]
Length = 1164
Score = 24.3 bits (51), Expect = 6.8
Identities = 31/126 (24%), Positives = 48/126 (37%), Gaps = 12/126 (9%)
Query: 282 IKETLKDNGIEFLGIGAYSSTRYQEYKEFSEKSKVFNSLEEFLMKLNQRSEKQNEILGYL 341
I L D G+ G GA + ++K + F+ K + E+LGY+
Sbjct: 828 ISSQLNDQGLSSGGNGAGVNYPLYQFKHPNYTENFTPEFRSFIDKHYSHHFEPLEVLGYI 887
Query: 342 YEVHSMYEKAIEQDANQFKRYQSELHSVRLDLMQKGFDDFSDKIFRRIENLEKEFSEQER 401
Y A+ + KRY+ L + D + F + D +FR + L E
Sbjct: 888 Y--------ALLYSPHYRKRYEDFL---KADYPKILFTNNKD-LFRALSLLGIELIGLHV 935
Query: 402 SKRESL 407
RESL
Sbjct: 936 LNRESL 941
>ref|NP_222999.1| P-AMINOBENZOATE SYNTHETASE [Helicobacter pylori J99]
Length = 567
Score = 24.3 bits (51), Expect = 6.8
Identities = 30/134 (22%), Positives = 55/134 (40%), Gaps = 15/134 (11%)
Query: 191 PSVPFEFLCFIDTPGFNSAKQGYTGGDKEASKESLKHAKHILWLISCESGEIHEDDLEYL 250
P + FE ++T Q +K A KE L H+ + + E+ L++
Sbjct: 358 PKIEFEI---VETMRVIKRDQKLEINNKNAHKERLMHSAQYF------NFKYDENLLDF- 407
Query: 251 QELYEEGKQVFIVLSRA----DRRTKRQLEEVVIKIKETLKDNGIEFLGIGAYSSTRYQE 306
EL +EG ++ R + RT L+ + I++ E D +FL + YQ
Sbjct: 408 -ELEKEGVLRVLLNKRGKLIKEYRTLEPLKSLEIRLSEAPIDKHDDFLYHKTAYAPFYQN 466
Query: 307 YKEFSEKSKVFNSL 320
+ +K +F+ +
Sbjct: 467 ARALIKKGVIFDEI 480
>ref|NP_222866.1| SHIKIMATE KINASE I [Helicobacter pylori J99]
Length = 162
Score = 24.3 bits (51), Expect = 6.8
Identities = 11/30 (36%), Positives = 18/30 (59%)
Query: 390 ENLEKEFSEQERSKRESLARLNEVIDLFKE 419
E L K +++ER KR L L + +LF++
Sbjct: 102 ETLIKRLNQKEREKRPLLNNLTQAKELFEK 131
Score = 23.9 bits (50), Expect = 8.9
Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
Query: 273 RQLEEVVIKIKETLKDNGIEFLGIGAYSSTRYQEYKEFSEKSKVFNSLEEFLMKLNQRSE 332
R E+ +I +TLK I G G ++ K + E + +LNQ+
Sbjct: 57 RMFEKNLIDELKTLKTPHIISTGGGI---VMHENLKGLGTTFYLKMDFETLIKRLNQKER 113
Query: 333 KQNEILGYLYEVHSMYEK 350
++ +L L + ++EK
Sbjct: 114 EKRPLLNNLTQAKELFEK 131
>ref|NP_223402.1| putative [Helicobacter pylori J99]
Length = 400
Score = 23.9 bits (50), Expect = 8.9
Identities = 14/63 (22%), Positives = 31/63 (48%), Gaps = 4/63 (6%)
Query: 322 EFLMKLNQRSEKQNEILGYLYEVHSMYEKAIEQDANQFKRYQSELHSVRLDLMQKGFDDF 381
+FL+K + + + EIL ++S + I + + ++ S+ ++ L+ F+DF
Sbjct: 58 DFLIKSEKATPLKREILKQALRIYSQSFEVISHNLQENSKHASQKKALDLET----FEDF 113
Query: 382 SDK 384
K
Sbjct: 114 IQK 116
>ref|NP_222962.1| putative [Helicobacter pylori J99]
Length = 222
Score = 23.9 bits (50), Expect = 8.9
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 28 QVGLKERYDLIARILNARIENEGLEEYQSVLDNEFLEFASGVDSLKEKEIALLTLQEIQK 87
Q+ KE+ I + NAR+ L+E +L+ + E + +L KE A TLQ +K
Sbjct: 43 QLSEKEQSLRILQTENARL----LDEKSDLLNKKEKEIDEKLKNLAAKEEAFKTLQTEEK 98
Query: 88 E 88
+
Sbjct: 99 K 99
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.316 0.136 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 506,350
Number of Sequences: 1491
Number of extensions: 25182
Number of successful extensions: 151
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 116
Number of HSP's gapped (non-prelim): 59
length of query: 447
length of database: 494,079
effective HSP length: 81
effective length of query: 366
effective length of database: 373,308
effective search space: 136630728
effective search space used: 136630728
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)