BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645581|ref|NP_207757.1| hypothetical protein
[Helicobacter pylori 26695]
(443 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223617.1| putative [Helicobacter pylori J99] 664 0.0
ref|NP_223619.1| putative [Helicobacter pylori J99] 42 3e-05
ref|NP_223491.1| putative [Helicobacter pylori J99] 40 1e-04
ref|NP_222772.1| putative [Helicobacter pylori J99] 37 0.001
ref|NP_223194.1| cag island protein [Helicobacter pylori J99] 36 0.002
ref|NP_223646.1| putative [Helicobacter pylori J99] 35 0.003
ref|NP_223788.1| putative [Helicobacter pylori J99] 32 0.032
ref|NP_223430.1| GUANOSINE-3',5'-BIS(DIPHOSPHATE) 3'-PYROPH... 32 0.042
ref|NP_222929.1| putative [Helicobacter pylori J99] 30 0.094
ref|NP_224063.1| putative thiophene/furan oxidation protein... 30 0.16
ref|NP_223345.1| FERROUS IRON TRANSPORT PROTEIN B [Helicoba... 29 0.27
ref|NP_223731.1| putative [Helicobacter pylori J99] 28 0.61
ref|NP_223553.1| Hydrogenase expression/formation protein [... 28 0.61
ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helico... 28 0.61
ref|NP_223351.1| putative HYDANTOIN UTILIZATION [Helicobact... 27 0.80
ref|NP_223122.1| putative TRANSCRIPTIONAL REGULATOR [Helico... 27 0.80
ref|NP_222831.1| putative [Helicobacter pylori J99] 27 0.80
ref|NP_223761.1| putative [Helicobacter pylori J99] 27 1.0
ref|NP_223001.1| putative FLAGELLAR-HOOK ASSOCIATED PROTEIN... 27 1.0
ref|NP_223555.1| Hydrogenase expression/formation protein [... 27 1.4
ref|NP_223399.1| putative [Helicobacter pylori J99] 27 1.4
ref|NP_223977.1| BIOPOLYMER TRANSPORT EXBD PROTEIN [Helicob... 26 1.8
ref|NP_223639.1| putative [Helicobacter pylori J99] 26 1.8
ref|NP_223184.1| GTP-binding protein [Helicobacter pylori J99] 26 1.8
ref|NP_223234.1| putative [Helicobacter pylori J99] 26 2.3
ref|NP_223170.1| DNA POLYMERASE III, BETA CHAIN [Helicobact... 26 2.3
ref|NP_223140.1| OLIGOPEPTIDASE [Helicobacter pylori J99] 26 2.3
ref|NP_224129.1| TYPE III DNA MODIFICATION ENZYME (METHYLTR... 25 3.0
ref|NP_223830.1| putative [Helicobacter pylori J99] 25 3.0
ref|NP_223449.1| TRIGGER FACTOR [Helicobacter pylori J99] 25 3.0
ref|NP_223407.1| putative FLAGELLAR HOOK-ASSOCIATED PROTEIN... 25 3.0
ref|NP_224193.1| putative [Helicobacter pylori J99] 25 5.2
ref|NP_224034.1| DNA transfer protein [Helicobacter pylori ... 25 5.2
ref|NP_223978.1| SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEI... 25 5.2
ref|NP_223831.1| aspartate-semialdehyde dehydrogenase [Heli... 25 5.2
ref|NP_224143.1| putative [Helicobacter pylori J99] 24 6.8
ref|NP_224125.1| N-UTILIZATION SUBSTANCE PROTEIN A [Helicob... 24 6.8
ref|NP_224094.1| UBIQUINONE/MENAQUINONE BIOSYNTHESIS METHLY... 24 6.8
ref|NP_222785.1| UREASE ACCESSORY PROTEIN [Helicobacter pyl... 24 6.8
ref|NP_224054.1| putative [Helicobacter pylori J99] 24 8.8
ref|NP_223894.1| PROTEIN-EXPORT MEMBRANE PROTEIN [Helicobac... 24 8.8
ref|NP_223760.1| putative [Helicobacter pylori J99] 24 8.8
ref|NP_223509.1| phosphoheptose isomerase [Helicobacter pyl... 24 8.8
ref|NP_223266.1| FLAGELLIN A [Helicobacter pylori J99] 24 8.8
>ref|NP_223617.1| putative [Helicobacter pylori J99]
Length = 500
Score = 664 bits (1714), Expect = 0.0
Identities = 353/430 (82%), Positives = 380/430 (88%), Gaps = 14/430 (3%)
Query: 1 MNEQELIQKSALIEKTLQEQGLQERAGPFISENAVIKTEELEKTLKEMQAEDRDLKVGII 60
MN QELI+KS LIEK LQEQGLQE+A PF+S+NAVIKTEELEKTLKEMQAEDRDLKVGII
Sbjct: 1 MNAQELIKKSTLIEKVLQEQGLQEKAKPFMSDNAVIKTEELEKTLKEMQAEDRDLKVGII 60
Query: 61 GRVKAGKSSLLNALIFEGVEVLPKAATPMTASLTILKYAKTLSAEVEFYSPKDILELKNE 120
G VKAGKSSLLNALIFEGVEVLPKAATPMTASLTILKYA TLSAEVEFYS KDI EL+NE
Sbjct: 61 GHVKAGKSSLLNALIFEGVEVLPKAATPMTASLTILKYANTLSAEVEFYSLKDIAELENE 120
Query: 121 HARYEREFNRIVDEEVKRQKEKQSLSNRAKEGFKNV-SKWLGKNKSTEAAPKERVLSDEE 179
H +YEREFNRIV+EEVK+QKEKQSLSNRAKEG +NV +K LG+NKS DEE
Sbjct: 121 HEKYEREFNRIVEEEVKKQKEKQSLSNRAKEGIRNVGNKMLGRNKS-----------DEE 169
Query: 180 INNRAERIAKSELEKDTKLVSSHDQYERMKKSGSLNTENLDSHIQANSLQELNQKLLQFV 239
I RAERIAK+ELEKDTKLVSSHDQYE++KKSGSLNT+NLD IQANSLQELNQKLLQFV
Sbjct: 170 IEKRAERIAKNELEKDTKLVSSHDQYEKIKKSGSLNTKNLDPRIQANSLQELNQKLLQFV 229
Query: 240 GADRKYMPYTKAVQISLNNPNLKDLEVIDTPGVNDPIASREERTKALLKDCDVVFIISSS 299
GAD KYMPYTKAV+ISLNNPNLKDLEVIDTPGVNDPIASREERTKALLKDCDVVFI+S S
Sbjct: 230 GADGKYMPYTKAVRISLNNPNLKDLEVIDTPGVNDPIASREERTKALLKDCDVVFIVSPS 289
Query: 300 NQFLTESDMSLFDRVSNKESLQEIYFVASQADSAVLSMSEVEKSRHHLPTALENAQKSLS 359
QFLT+SDMSLFDRVS+KE LQEIYFVASQADSAV SMSEVEKS HHLPTA ENAQKSLS
Sbjct: 290 GQFLTDSDMSLFDRVSHKEGLQEIYFVASQADSAVGSMSEVEKSNHHLPTAFENAQKSLS 349
Query: 360 SSLNKTMEALIQTNPNQRGIFEKAIKNGVILTSGACFSMYKDFKNQASWE--SKKEECYN 417
S LN M ALI+ PNQR +FEKA +NGVILTSG CFSM+KDF+NQASWE K EE +N
Sbjct: 350 SQLNNIMGALIEKYPNQREVFEKAKQNGVILTSGVCFSMHKDFENQASWERNQKTEEYHN 409
Query: 418 AWRNLTNAYP 427
A RNL ++YP
Sbjct: 410 ALRNLRDSYP 419
>ref|NP_223619.1| putative [Helicobacter pylori J99]
Length = 166
Score = 42.0 bits (97), Expect = 3e-05
Identities = 32/99 (32%), Positives = 46/99 (46%), Gaps = 6/99 (6%)
Query: 51 EDRDLKVGIIGRVKAGKSSLLNALIFEGVEVLPKAATPMTASLTILKYAKTLSAEVEFYS 110
+ + L + ++G AGKS+LLN F G VLP TP T+ T L Y + + +E +S
Sbjct: 16 QKQQLVIPVVGNFSAGKSTLLNR--FLGSSVLPTGITPETSLATELHY--SANERIEAFS 71
Query: 111 PKDILELKNEHARYEREFNRIVDEEVKRQKEKQSLSNRA 149
D E E+ F I + K K L+N A
Sbjct: 72 SND--EKTESFELNEQSFEAIKENAAKYSYLKVYLNNEA 108
>ref|NP_223491.1| putative [Helicobacter pylori J99]
Length = 462
Score = 40.0 bits (92), Expect = 1e-04
Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 10 SALIEKTLQEQGLQERAGPFISENAVIKTEELEKTLKEMQAEDRDLKVGIIGRVKAGKSS 69
SALI+ L L + + + + E L+E + E+ ++VGIIGRV GKSS
Sbjct: 157 SALIDAVLNALNLNQIIEQDLDADILESLETPNNALEETK-EEEIIQVGIIGRVNVGKSS 215
Query: 70 LLNAL 74
LLNAL
Sbjct: 216 LLNAL 220
Score = 24.6 bits (52), Expect = 5.2
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 48 MQAEDRDLK-VGIIGRVKAGKSSLLNALIFEGVEV 81
M + LK + I+G+ GKSSL N L E + +
Sbjct: 1 MNTSHKTLKTIAILGQPNVGKSSLFNRLARERIAI 35
>ref|NP_222772.1| putative [Helicobacter pylori J99]
Length = 220
Score = 37.0 bits (84), Expect = 0.001
Identities = 32/119 (26%), Positives = 51/119 (41%), Gaps = 6/119 (5%)
Query: 117 LKNEHARYEREFNRIVDEEVKRQKEKQSLSNRAKEGFKNVSKWLGKNKSTEAAPKERVLS 176
L E R ERE + ++ KEK L + E KN + L K+ KE +
Sbjct: 42 LTTEKERLERENKNLTADKENLTKEKTELQKQVNE-LKNSKQVLENEKADWLREKENLTK 100
Query: 177 DEEINNRAERIAKSELEKDTKLVSSHDQYERMKKSGSLNTENLDSHIQANSLQELNQKL 235
D E + K+EL + K++++ + +K +L E +S Q N L+ Q L
Sbjct: 101 DRENLTK----EKTELTEKNKVLTTEKERLATEKE-NLTKEKTESQKQVNELKNSKQVL 154
Score = 28.5 bits (62), Expect = 0.36
Identities = 41/158 (25%), Positives = 61/158 (37%), Gaps = 24/158 (15%)
Query: 80 EVLPKAATPMTASLTILKYAKT-LSAEV-EFYSPKDILELKNEHARYEREFNRIVDEEVK 137
E L + +TA L KT L +V E + K +LE NE A + RE + +
Sbjct: 47 ERLERENKNLTADKENLTKEKTELQKQVNELKNSKQVLE--NEKADWLREKENLTKDREN 104
Query: 138 RQKEKQSLSNRAKEGFKNVSKWLGKNKSTEAAPKERVLSDEEINNRAERIAKSELEKDTK 197
KEK L+ + +K L K A KE + + K+E +K
Sbjct: 105 LTKEKTELTEK--------NKVLTTEKERLATEKENLTKE-----------KTESQKQVN 145
Query: 198 LVSSHDQYERMKKSGSLNTENLDSHIQANSLQELNQKL 235
+ + Q +K+ L EN L E NQ+L
Sbjct: 146 ELKNSKQVLENEKA-DLTNENTKLKTDKTDLTEKNQRL 182
>ref|NP_223194.1| cag island protein [Helicobacter pylori J99]
Length = 1819
Score = 36.2 bits (82), Expect = 0.002
Identities = 72/313 (23%), Positives = 120/313 (38%), Gaps = 52/313 (16%)
Query: 114 ILELKNEHARYEREFNRIVDEEVKRQKEKQSL----SNRAKEGFKNVSKWLGKNKSTEAA 169
+ + KNE R E E +++ E K+ E Q+L + + E K K L K+ +
Sbjct: 659 VSKAKNEAERKECE--KLLTPEAKKLLENQALDCLKNAKTDEERKECLKDLPKDLQKKVL 716
Query: 170 PKE--RVLSD--EEINNRAERIAKSEL--EKDTKLVSSHDQYERMKKSGSLNTENLDSHI 223
KE RV D + N AER +L + KL+ + + K L N
Sbjct: 717 AKESVRVYLDCVSKAKNEAERKECEKLLTPEARKLLEEAKKSVKAYKDCVLRARNEKEKQ 776
Query: 224 QANSLQELN-QKLLQFVGADRKYMPYTKAVQISLNNPNLKDLEVIDTPGVNDPIASREER 282
+ L +KLL+ + + Y V + N K+ E + TP + +E
Sbjct: 777 ECEKLLTPEARKLLE--ESKKSVKAYLDCVSKAKNEAERKECEKLLTPEARKLLEEAKES 834
Query: 283 TKALLKDCDVVFIISSSNQFLTESDMSLFDRVSNKESLQEIYFVASQADSAVLSMSEVEK 342
KA KDC R N++ QE + + +L E+
Sbjct: 835 VKAY-KDC--------------------VSRARNEKEKQECEKLLTPEARKLL-----EE 868
Query: 343 SRHHLPTALENAQKSLSSSLNKTMEALIQTNPNQRGIFEKAIKNGVILTSGACFSMYKDF 402
S+ + L+ K+ + + K E L+ P R + E+A ++ YKD
Sbjct: 869 SKKSVKAYLDCVSKAKNEAERKECEKLL--TPEARKLLEEAKES---------VKAYKDC 917
Query: 403 KNQASWESKKEEC 415
++A E +K+EC
Sbjct: 918 VSRARNEKEKQEC 930
Score = 33.5 bits (75), Expect = 0.011
Identities = 98/441 (22%), Positives = 163/441 (36%), Gaps = 77/441 (17%)
Query: 14 EKTLQEQGLQERAGPFISENAV-----IKTEELEKTLKEMQAEDRDLKVGIIGRVKAGKS 68
EK +GL + A + + A+ KT+E K + +D ++ VKA K
Sbjct: 452 EKNECLKGLSKEAIERLKQQALDCLKNAKTDEERKECLKNIPQDLQKELLADMSVKAYKD 511
Query: 69 SLLNALIFEGVEVLPKAATPMTA------SLTILKYAKTLSAEVEFYS--PKDI---LEL 117
+ A + + K TP +L LK AKT E PKD+ +
Sbjct: 512 CVSRARNEKEKQECEKLLTPEAKKLLENQALDCLKNAKTDEERKECLKNLPKDLQSDILA 571
Query: 118 KNEHARYEREFNRIVDEEVKRQKEK-------QSLSNRAKEGFKNVSKWLGKNKSTEAAP 170
K Y+ ++ E K++ EK + L AKE K + + K TEA
Sbjct: 572 KESLKAYKDCASQAKTEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQAK-TEAEK 630
Query: 171 KE-RVLSDEEINNRAERIAKS-----ELEKDTKLVSSHDQYERM---KKSGSLNTENLDS 221
KE L E + E KS + K + + E++ + L + LD
Sbjct: 631 KECEKLLTPEAKKKLEEAKKSVRAYLDCVSKAKNEAERKECEKLLTPEAKKLLENQALDC 690
Query: 222 HIQANS-------LQELNQKLLQFVGADRKYMPYTKAVQISLNNPNLKDLEVIDTPGVND 274
A + L++L + L + V A Y V + N K+ E + TP
Sbjct: 691 LKNAKTDEERKECLKDLPKDLQKKVLAKESVRVYLDCVSKAKNEAERKECEKLLTPEARK 750
Query: 275 PIASREERTKALLKDCDVVFIISSSNQFLTESDMSLFDRVSNKESLQEIYFVASQADSAV 334
+ ++ KA KDC + R N++ QE + + +
Sbjct: 751 LLEEAKKSVKAY-KDCVL--------------------RARNEKEKQECEKLLTPEARKL 789
Query: 335 LSMSEVEKSRHHLPTALENAQKSLSSSLNKTMEALIQTNPNQRGIFEKAIKNGVILTSGA 394
L E+S+ + L+ K+ + + K E L+ P R + E+A ++
Sbjct: 790 L-----EESKKSVKAYLDCVSKAKNEAERKECEKLL--TPEARKLLEEAKES-------- 834
Query: 395 CFSMYKDFKNQASWESKKEEC 415
YKD ++A E +K+EC
Sbjct: 835 -VKAYKDCVSRARNEKEKQEC 854
Score = 31.2 bits (69), Expect = 0.055
Identities = 59/319 (18%), Positives = 119/319 (36%), Gaps = 43/319 (13%)
Query: 122 ARYEREFNRIVDEEVKRQKEKQSLSNRAKEGFKNVSKWLGKNKSTEAAPKE---RVLSDE 178
AR E+E E++ + K+ L N+A + KN K + + PK+ +VL+ E
Sbjct: 921 ARNEKEKQEC--EKLLTPEAKKLLENQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKE 978
Query: 179 EINNRAERIAKSELEKDTK------------LVSSHDQYERMKKSGSLNTENLDSHIQAN 226
+ + ++K++ E + K L+ + + K N +
Sbjct: 979 SVRVYLDCVSKAKNEAERKECEKLLTPEARKLLEEAKESVKAYKDCVSRARNEKEKQECE 1038
Query: 227 SLQELNQKLLQFVGADRKYMPYTKAVQISLNNPNLKDLEVIDTPGVNDPIAS------RE 280
L + L + Y V + N ++ E + TP + + +
Sbjct: 1039 KLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKLLENQALDCLKN 1098
Query: 281 ERTKALLKDCDVVFIISSSNQFLTESDMSLF----DRVSNKESLQEIYFVASQADSAVLS 336
+T+A K C + L + + + R N++ +E + + +L
Sbjct: 1099 AKTEAEKKRCVKDLPKDLQKKVLAKESVKAYLDCVSRARNEKEKKECEKLLTPEARKLL- 1157
Query: 337 MSEVEKSRHHLPTALENAQKSLSSSLNKTMEALIQTNPNQRGIFEKAIKNGVILTSGACF 396
E+S+ + L+ K+ + + K E L+ P R + E+A ++
Sbjct: 1158 ----EESKKSVKAYLDCVSKAKNEAEKKECEKLL--TPEARKLLEEAKES---------V 1202
Query: 397 SMYKDFKNQASWESKKEEC 415
YKD ++A E +K+EC
Sbjct: 1203 KAYKDCVSRARNEKEKQEC 1221
>ref|NP_223646.1| putative [Helicobacter pylori J99]
Length = 150
Score = 35.4 bits (80), Expect = 0.003
Identities = 27/118 (22%), Positives = 56/118 (46%), Gaps = 13/118 (11%)
Query: 95 ILKYAKTLSAEVEFYSPKDILELKNEHARYEREFNRIVDEEVKRQKE---KQSLSNRAKE 151
I KY + + + + + + LK +H ++D+ K K+ K + + ++KE
Sbjct: 26 IAKYTRLVEQKPSYPRLEYLQALKWDH-------KTLIDDLAKMSKDRNYKPAFNPKSKE 78
Query: 152 GFKNVS---KWLGKNKSTEAAPKERVLSDEEINNRAERIAKSELEKDTKLVSSHDQYE 206
KN++ + +N+ E K S +EI E++ + E+EK ++ ++ D YE
Sbjct: 79 VLKNLNAEKRASLENEREEQGVKGNTKSHDEIEPATEQVIEKEIEKGDEIANNVDYYE 136
>ref|NP_223788.1| putative [Helicobacter pylori J99]
Length = 433
Score = 32.0 bits (71), Expect = 0.032
Identities = 33/157 (21%), Positives = 67/157 (42%), Gaps = 8/157 (5%)
Query: 83 PKAATPMTASLTILKYAKTLSAEVEFYSPKDI-LELKNEHARYEREFNRIVDEEV---KR 138
PK P+ S + K ++ + K E+ + A+Y+ F + +E +R
Sbjct: 12 PKCQEPINVSEALYKQIESENQSRFLAQQKAFEKEVNEKRAQYQSYFKNLEQKEEALKER 71
Query: 139 QKEKQSLSNRAKEGFKNVSKWLGKNKSTEAAPKERVLSDEEINNRAERIAKSELEKDTKL 198
KE+Q+ + A + ++ + K E A K L + + + + EL++ +K
Sbjct: 72 AKEQQAQFDEAVKQASALALQDERAKIIEEARKNAFLEQQ----KGLELLQKELDEKSKQ 127
Query: 199 VSSHDQYERMKKSGSLNTENLDSHIQANSLQELNQKL 235
V Q E + +S ++A + ++LN+KL
Sbjct: 128 VQELHQKEAEIERLKRENNEAESRLKAENEKKLNEKL 164
>ref|NP_223430.1| GUANOSINE-3',5'-BIS(DIPHOSPHATE) 3'-PYROPHOSPHOHYDROLASE
[Helicobacter pylori J99]
Length = 776
Score = 31.6 bits (70), Expect = 0.042
Identities = 23/108 (21%), Positives = 47/108 (43%)
Query: 112 KDILELKNEHARYEREFNRIVDEEVKRQKEKQSLSNRAKEGFKNVSKWLGKNKSTEAAPK 171
K + K A Y +R+ +K + E +S E +KN+ ++L KNK +
Sbjct: 181 KQVRISKETLAVYAPIASRLGMSSIKNELEDKSFYYIYPEEYKNIKEYLHKNKQSLLLKL 240
Query: 172 ERVLSDEEINNRAERIAKSELEKDTKLVSSHDQYERMKKSGSLNTENL 219
S E + S+ + T++ + Y +M++ G++N + +
Sbjct: 241 NAFASKLEKKLFDSGFSHSDFKLVTRVKRPYSIYLKMQRKGAVNIDEI 288
>ref|NP_222929.1| putative [Helicobacter pylori J99]
Length = 86
Score = 30.4 bits (67), Expect = 0.094
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 179 EINNRAERIAKSELEKDTKLVS---SHDQYERMKKSGSLNTENLDSHIQANSLQELNQ 233
E N+ R K++ K T+ VS S +QY++++K + E++ S+I+ L+ L +
Sbjct: 14 ETKNKLGRKPKADANKKTRAVSLYFSDEQYQKLEKMANEEEESVGSYIKRYILKALRK 71
>ref|NP_224063.1| putative thiophene/furan oxidation protein [Helicobacter pylori
J99]
Length = 461
Score = 29.6 bits (65), Expect = 0.16
Identities = 15/49 (30%), Positives = 26/49 (52%)
Query: 29 FISENAVIKTEELEKTLKEMQAEDRDLKVGIIGRVKAGKSSLLNALIFE 77
F E + ++L + ++ + I+G+ AGKSSLLNA++ E
Sbjct: 199 FNLEKQIASFKDLLDFSNAQKQRNKGHALSIVGKPNAGKSSLLNAMLLE 247
Score = 27.3 bits (59), Expect = 0.80
Identities = 30/139 (21%), Positives = 61/139 (43%), Gaps = 20/139 (14%)
Query: 264 LEVIDTPGVNDPIASRE----ERTKALLKDCDVVFIISSSNQFLTESDMSLFDRVSNKES 319
+ +IDT G+ + E E++ L++CD++ + ++ L + D +L D ++ +
Sbjct: 274 VRLIDTAGIRESADEIERLGIEKSLKSLENCDIILGVFDLSKPLEKEDFNLMDTLNRTK- 332
Query: 320 LQEIYFVASQADSAVLSMSEVEKSRHHLPTAL--------ENAQKSLSSSLNK------T 365
+ V ++ D A E+ KS +P ++ + K LS +++ T
Sbjct: 333 -KPCIVVLNKNDLAPKLELEILKSYLKIPYSILETNTLNSKACLKDLSQKISEFFPKLDT 391
Query: 366 MEALIQTNPNQRGIFEKAI 384
L+ T+ Q E AI
Sbjct: 392 QNKLLLTSLAQTTALENAI 410
>ref|NP_223345.1| FERROUS IRON TRANSPORT PROTEIN B [Helicobacter pylori J99]
Length = 642
Score = 28.9 bits (63), Expect = 0.27
Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 8/65 (12%)
Query: 15 KTLQEQGLQERAGPFISENAVIKTEELEKTLKEMQAE--DRDLKVGIIGRVKAGKSSLLN 72
KT +++ L + +NA + +E E+ LKE++ E ++LK ++GR A + N
Sbjct: 478 KTYKQESL------LVQKNANLSSEAKEEKLKELKTELDKKNLKNSVVGRGGAYLEKVFN 531
Query: 73 ALIFE 77
+ F+
Sbjct: 532 PMDFD 536
Score = 26.2 bits (56), Expect = 1.8
Identities = 10/22 (45%), Positives = 17/22 (76%)
Query: 53 RDLKVGIIGRVKAGKSSLLNAL 74
+++ V ++G+ GKSSL+NAL
Sbjct: 2 KEIIVALVGQPNVGKSSLINAL 23
>ref|NP_223731.1| putative [Helicobacter pylori J99]
Length = 201
Score = 27.7 bits (60), Expect = 0.61
Identities = 26/105 (24%), Positives = 50/105 (46%), Gaps = 8/105 (7%)
Query: 276 IASREERTKALLKDCDVVFIISSSNQFLTESDMSLFDRVSNKESLQEIYFVASQADSAVL 335
+ SR + K + KD + IS S E D S F+R ++ + I D+
Sbjct: 60 LESRLKSLKGMDKDAKELVGISKSYAHNNEKDRSDFERFKSRLD-KAIDSFNQNLDNGAA 118
Query: 336 SM---SEVE----KSRHHLPTALENAQKSLSSSLNKTMEALIQTN 373
S+ S+++ K+ +LE+ ++S+ +SL++ + L +TN
Sbjct: 119 SLKLPSDIDIDDTKALEKFSKSLESEKESIQNSLHQWKKQLAETN 163
>ref|NP_223553.1| Hydrogenase expression/formation protein [Helicobacter pylori J99]
Length = 370
Score = 27.7 bits (60), Expect = 0.61
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 314 VSNKESLQEIYFVASQADSAVLSMSEVEKSRHHLPTALENAQKSLSSS-LNKTMEAL--I 370
V + L E Y +AS DS VLS+ ++ + + ++ +K L + L M+AL
Sbjct: 72 VMPRARLDEAYELASMKDSIVLSLGDMMRVPGSYGSLIQAREKGLDARFLYSPMQALEIA 131
Query: 371 QTNPNQRGIF 380
+ NP+++ I+
Sbjct: 132 KENPHKKVIY 141
>ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helicobacter pylori J99]
Length = 949
Score = 27.7 bits (60), Expect = 0.61
Identities = 27/89 (30%), Positives = 43/89 (47%), Gaps = 19/89 (21%)
Query: 5 ELIQKSAL----IEKTLQEQGLQERAGPFISENAV-IKTEE------LEKTLKEMQAED- 52
E QK+ L + KTL GL F+ ++++ I EE ++ TL+E + E+
Sbjct: 382 EFAQKANLNLADVIKTLFNLGLMVTKNDFLDKDSIEILAEEFHLEISVQNTLEEFEVEEV 441
Query: 53 -------RDLKVGIIGRVKAGKSSLLNAL 74
R V I+G V GK+SLL+ +
Sbjct: 442 LEGVKKERPPVVTIMGHVDHGKTSLLDKI 470
Score = 27.3 bits (59), Expect = 0.80
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 377 RGIFEKAIKNGVILTSGACFSMYKDFKNQASWESKKEEC 415
RGI + I++GV++ +G S+ K FK+ SK EC
Sbjct: 884 RGIKARLIRDGVVVHTGEILSL-KRFKDDVKEVSKGYEC 921
Score = 24.6 bits (52), Expect = 5.2
Identities = 24/87 (27%), Positives = 37/87 (41%), Gaps = 15/87 (17%)
Query: 138 RQKEKQSLSNRA--KEGFKNVSKWLGKNKSTEAAPKERVLSDEEINNRAERIAKSELE-- 193
+Q K L+ A K K SK K + T+A PK + +++ A I K E+E
Sbjct: 71 KQDNKDDLNTAATPKPLAKKASK-TPKKEETKAQPKPKKTKEKKKEAPAPIIKKKEIEIV 129
Query: 194 ----------KDTKLVSSHDQYERMKK 210
++T SH Q E+ K+
Sbjct: 130 NTFENQTPLVENTPKAVSHSQIEKAKQ 156
>ref|NP_223351.1| putative HYDANTOIN UTILIZATION [Helicobacter pylori J99]
Length = 712
Score = 27.3 bits (59), Expect = 0.80
Identities = 27/101 (26%), Positives = 50/101 (48%), Gaps = 14/101 (13%)
Query: 136 VKRQKEKQSLSNRAKEGFKNVSKWLGKNKSTEAAPKERVLSDEEINNRAERIAKSELEKD 195
V++++ K ++ + G K + L +S + A ER++ D IA E+EK
Sbjct: 153 VRQEEVKTAVKELLEAGAKAIVICL--LQSHKNAESERIVRD---------IALKEIEKL 201
Query: 196 TKLV---SSHDQYERMKKSGSLNTENLDSHIQANSLQELNQ 233
K + +S D Y + K+S +NT L+++ S Q L++
Sbjct: 202 GKNIPVFASVDYYPQRKESHRMNTTILEAYAAEPSRQTLSK 242
>ref|NP_223122.1| putative TRANSCRIPTIONAL REGULATOR [Helicobacter pylori J99]
Length = 298
Score = 27.3 bits (59), Expect = 0.80
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 91 ASLTILKYAKTLSAEVEFYSPKDIL--ELKNEHARYEREFNRIVDEEVKRQKEKQSL 145
A+ +L+YAK + F+S KD EL + ER F + EE+K+ ++ + L
Sbjct: 154 ANAYLLQYAKERQMDFSFFSLKDTTWKELYKNKDKLERPFYIMHLEELKKDEQLKLL 210
>ref|NP_222831.1| putative [Helicobacter pylori J99]
Length = 412
Score = 27.3 bits (59), Expect = 0.80
Identities = 69/324 (21%), Positives = 135/324 (41%), Gaps = 33/324 (10%)
Query: 64 KAGKSSLLNALIFEGVEVLPKAATPMTASLTILKYAKTLSAEVEFYSP-KDILELKNEHA 122
+A K + +N + G+ + AA+ + A+ + K + E E K ++L+ E
Sbjct: 92 QAEKENQINWWKYSGLTI---AASLLLAACSTGDIDKQIELEQEKKEANKSGIKLEQERQ 148
Query: 123 RYEREFNRIVDEEVKRQKEKQSLSNRAKEGFKNVSKWLGKNKSTEAAPKERVLSDEEINN 182
+ E+E + E++ ++E+Q + E + K + + TE ++ S+ E+
Sbjct: 149 KTEQERQKTNKSEIELEQERQKTNKSGIELANSQIKAEQERQKTEQEKQKANKSEIELEQ 208
Query: 183 RAERI--AKSELEKDTKLVSSHDQYERMKKSGSL----------NTENLDSHIQANSLQE 230
+ ++ + +L K+ K + +K G L T + I+A
Sbjct: 209 QKQKTINTQRDLIKEQKDFIKETEQNCQEKHGQLFIKKARIKTGITTGIAIEIEAECKTP 268
Query: 231 LNQKLLQFVGADRKYMPYTKAVQISLNNPNLKDLEVIDTPGVNDPIASREERTKALLKDC 290
K Q K++P +K + + K E+I + + S KA+ K
Sbjct: 269 KPAKTNQ-TPIQPKHLPNSKQPR---SQRGSKAQELI--AYLQKELESLPYSQKAIAKQV 322
Query: 291 DVVFIISSSNQFLTESDMSLFDRVSNKESLQEIYFVASQADSAVLSMSEVEKSRHHLPT- 349
D F SS +L ++ D +E +E + S+A + +L E+ + HLPT
Sbjct: 323 D--FYKPSSIAYL---ELDPRDFKVTEEWQKENLKIRSKAQAKML---EMRNPQAHLPTS 374
Query: 350 -ALENAQKSLSSSLNKTMEALIQT 372
+L QK + + +NK +EA+ T
Sbjct: 375 QSLLFVQK-IFADINKEIEAVANT 397
>ref|NP_223761.1| putative [Helicobacter pylori J99]
Length = 1154
Score = 26.9 bits (58), Expect = 1.0
Identities = 28/121 (23%), Positives = 60/121 (49%), Gaps = 17/121 (14%)
Query: 88 PMTASLTILKYAKTLS---------AEVEFYSPKDILELKNEHARYEREFNRIVDEEVKR 138
P+T+ +LK + L+ + +E + + + +L++E + E+EF + ++E+KR
Sbjct: 282 PLTSQEDLLKDTENLNETTPKPTHLSPLELANAEKLAKLESEQLQSEQEFLKAKEQELKR 341
Query: 139 QK--EKQSLSNRAKEGF--KNVSKWLGKNKSTEA---APKERV-LSDEEINNRAERIAKS 190
++ +K+ R G +G++ T+ PK RV L++ EI + I K+
Sbjct: 342 KEALKKKLEHERGNAGHIESQTKIEVGEDIPTQVQAQIPKSRVRLNEREIYDLDYAIVKA 401
Query: 191 E 191
+
Sbjct: 402 K 402
>ref|NP_223001.1| putative FLAGELLAR-HOOK ASSOCIATED PROTEIN 3 (HAP3) [Helicobacter
pylori J99]
Length = 828
Score = 26.9 bits (58), Expect = 1.0
Identities = 55/316 (17%), Positives = 120/316 (37%), Gaps = 44/316 (13%)
Query: 63 VKAGKSSLLNALIFEGVEVLPKAATPMTASLTILKYAKTLSAEVEFYSPKDILELKNEHA 122
V A K++ L+ + + VE L A+ + I ++ ++ +K+
Sbjct: 383 VLANKNTKLSEIFGDKVETLKINASRLGDESAIKIPNLPINLDIPILLDVKNSTIKDLKD 442
Query: 123 RYEREFNRIVDEEVKRQKEKQSLSNRAKEGFKNVSKWLGKNKSTEAA--PKERVLSDEEI 180
+ FN VD E++ + + N +KE + + K E A P ++
Sbjct: 443 AIKERFNNEVDVEIETNGRLRIIDNSSKESPISFALSTLDQKGLEVAGIPTNNASEYQKT 502
Query: 181 NNRAERIAKSELEKDTKLVSSHDQYERMKKSGSLNTENLDSHIQANSLQELNQKLLQF-V 239
E ++LE + + +D K ++ +L++ + L ++N L+ +
Sbjct: 503 YFNKEG---AKLESNVAQTAQNDAANGSTKLSEVSKGSLENSVFNMKLNDVNGSFLEAQI 559
Query: 240 GADRK--YMPYTKAVQISLNNPNLKDLEVIDTPGVNDPIASREERTKALLKDCDVVFIIS 297
D ++ V+I L +P D++ + E T L D + +
Sbjct: 560 NLDNNGAFLSLPNGVKIPLYDPTTADIQA----------SKPNEVTYRQLMDAMSIALNY 609
Query: 298 SSNQFLTESDMSLFDRVSNKESLQEIYFVASQADSAVLSMSEVEKSRHHLPTALENAQKS 357
S+ +D +++ ++S+ + +E S+ L+ A+ +
Sbjct: 610 SN------TDPAIYQQISDNPTSKE--------------------SKERFIELLKQAKDN 643
Query: 358 LSSSLNKTMEALIQTN 373
LS +LN+ + +IQ N
Sbjct: 644 LSINLNEEGKVIIQDN 659
>ref|NP_223555.1| Hydrogenase expression/formation protein [Helicobacter pylori J99]
Length = 242
Score = 26.6 bits (57), Expect = 1.4
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 137 KRQKEKQSLSNRAKEGFKNVSKWLGKNKSTEAAPKERVLSD 177
+R++ Q+ N +K+ K V K L KN A KER L +
Sbjct: 4 QRKESLQNNPNLSKKDIKIVEKILSKNDIKAAEMKERYLKE 44
>ref|NP_223399.1| putative [Helicobacter pylori J99]
Length = 404
Score = 26.6 bits (57), Expect = 1.4
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 41 LEKTLKEMQAEDRDLKVGIIGRVKAGKSSLLNAL 74
+ K L+ ++ E + V ++G GKSSL+NAL
Sbjct: 32 MSKMLEFIKKEKPKMNVLLMGATGVGKSSLINAL 65
>ref|NP_223977.1| BIOPOLYMER TRANSPORT EXBD PROTEIN [Helicobacter pylori J99]
Length = 129
Score = 26.2 bits (56), Expect = 1.8
Identities = 15/51 (29%), Positives = 28/51 (54%)
Query: 100 KTLSAEVEFYSPKDILELKNEHARYEREFNRIVDEEVKRQKEKQSLSNRAK 150
+ LSA V+ PK +++LK++ + F I+D + E S+S +A+
Sbjct: 79 EALSAVVKQTDPKTLIDLKSDKSSRFETFISIMDILKEHNHENFSISTQAQ 129
>ref|NP_223639.1| putative [Helicobacter pylori J99]
Length = 328
Score = 26.2 bits (56), Expect = 1.8
Identities = 18/56 (32%), Positives = 28/56 (49%), Gaps = 1/56 (1%)
Query: 156 VSKWLGKNKSTEAAPKERVLSDEEINNRAERIAKSELEKDTKLVSSHDQYERMKKS 211
VS W G K E KE+ D E + +A+ I + ELE+ K + Q + +K+
Sbjct: 6 VSAW-GLPKILEERLKEKYGDDWEKHVKAKAINEEELEEQVKAKAKEQQKTQREKT 60
>ref|NP_223184.1| GTP-binding protein [Helicobacter pylori J99]
Length = 301
Score = 26.2 bits (56), Expect = 1.8
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 57 VGIIGRVKAGKSSLLNALI 75
V +IG+ AGKS+LLN L+
Sbjct: 8 VALIGKPNAGKSTLLNTLL 26
>ref|NP_223234.1| putative [Helicobacter pylori J99]
Length = 366
Score = 25.8 bits (55), Expect = 2.3
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 55 LKVGIIGRVKAGKSSLLNAL 74
L VGI+G GKSS NAL
Sbjct: 3 LSVGIVGLPNVGKSSTFNAL 22
>ref|NP_223170.1| DNA POLYMERASE III, BETA CHAIN [Helicobacter pylori J99]
Length = 374
Score = 25.8 bits (55), Expect = 2.3
Identities = 14/36 (38%), Positives = 21/36 (57%), Gaps = 2/36 (5%)
Query: 225 ANSLQELNQK--LLQFVGADRKYMPYTKAVQISLNN 258
A L + NQK L VG D K + YT+ +IS+++
Sbjct: 155 AGVLMQFNQKHQTLSVVGTDTKRLSYTQLEKISIHS 190
>ref|NP_223140.1| OLIGOPEPTIDASE [Helicobacter pylori J99]
Length = 578
Score = 25.8 bits (55), Expect = 2.3
Identities = 33/142 (23%), Positives = 57/142 (39%), Gaps = 19/142 (13%)
Query: 300 NQFLTESDMSLFDRVSNKESLQEIYFVASQADSAVLSMSEVEKSRHHLPTALENAQKSLS 359
NQ ES S+ + V+ SL Y+ A + +++ + P E+ + S
Sbjct: 242 NQISQESVDSMIEIVNANFSLVHRYY----HQKAQILGHKLKDYDRYAPLNDESITMTYS 297
Query: 360 SSLNKTMEALIQTNPNQRGIFEKAIKNGVILTSGACFSMYKDFKNQASWESKKEECYNAW 419
+L + ++ L +P I KAIK G + S KDFK ++
Sbjct: 298 QALEEVLKTLKAFSPEFHKIASKAIKEGWV------DSHPKDFKQGGAFSHGA------- 344
Query: 420 RNLTNAYPLTLLTALINLKKAY 441
+ +A+P LL N + A+
Sbjct: 345 --VPSAHPYVLLNYTGNRRDAF 364
>ref|NP_224129.1| TYPE III DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 641
Score = 25.4 bits (54), Expect = 3.0
Identities = 25/112 (22%), Positives = 47/112 (41%), Gaps = 7/112 (6%)
Query: 315 SNKESLQEIYFVASQADSAVLSMSEVEKSRHHLPTALENAQKSLSSSLNKTMEALIQTNP 374
SNK Q++ S+ ++ V K R + L+ + S+ + + L T+P
Sbjct: 431 SNKSDYQKL----SEGGGLFNGLNAVFKERRFILVQLDEKIEKNKSAYDFCLNTLKSTSP 486
Query: 375 NQRGIFEKAIKNGVILTSGACFSMYKDFKNQASWESKKEECYNAWRNLTNAY 426
+ I E+ IK AC + F+ ++E +E + +NL A+
Sbjct: 487 SIFDITEERIKRAGAKIKEACAHLDVGFR---AFEIIDDETHTNDKNLGEAH 535
>ref|NP_223830.1| putative [Helicobacter pylori J99]
Length = 383
Score = 25.4 bits (54), Expect = 3.0
Identities = 17/95 (17%), Positives = 39/95 (40%), Gaps = 1/95 (1%)
Query: 112 KDILELKNEHARYEREFNRIVDEEVKRQKEKQSLSNRAKEGFKNVSKWLGKNKSTEAAPK 171
K +EL+ E + E+E + E+ K ++EKQ ++ + K + + +
Sbjct: 119 KSGIELEQEEQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVE 178
Query: 172 ERVLSDEEINNRAERIAKSELEK-DTKLVSSHDQY 205
+ E+ + K + K + +H+Q+
Sbjct: 179 QEQQKTEQEKQKTNNTQKDLVNKAEQNCQENHNQF 213
>ref|NP_223449.1| TRIGGER FACTOR [Helicobacter pylori J99]
Length = 451
Score = 25.4 bits (54), Expect = 3.0
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 97 KYAKTLSAEVEFYSPKDILELKNEHARYEREFNRIVDEEVKRQKEKQSLSNRAKEGFKN 155
K + L ++ F PK I+E + + + + EEVK ++ Q + +E F+N
Sbjct: 296 KLIENLDEKILFDLPKTIIEQEMD-LLFRNALYSMQAEEVKSLQDSQEKAKEKRESFRN 353
>ref|NP_223407.1| putative FLAGELLAR HOOK-ASSOCIATED PROTEIN 2 (HAP2) [Helicobacter
pylori J99]
Length = 685
Score = 25.4 bits (54), Expect = 3.0
Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 9/108 (8%)
Query: 163 NKSTEAAPKERVLSDEEINNRAERIAKSELEKDTKLVSSHDQYERMKKSGSLNTENLDSH 222
+K+ E + + ++ A I + +LE L + K + + EN D+
Sbjct: 303 SKAKELGFSQTTTQESDLLKSARTIKEGKLEGVVSLNGQKLDLSALTKESNTSEENTDAI 362
Query: 223 IQANSLQELNQKLLQFVGADRKYMPYTKAVQI------SLNNPNLKDL 264
IQA + +E L F A+ K + +K + +L +LKDL
Sbjct: 363 IQAINAKE---GLNAFKNAEGKLVINSKTGMLTIKGEDALGKASLKDL 407
>ref|NP_224193.1| putative [Helicobacter pylori J99]
Length = 208
Score = 24.6 bits (52), Expect = 5.2
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 59 IIGRVKAGKSSLLNALIFEGVEVLPKAATP 88
I+GR GKS+ +N L+ G + +ATP
Sbjct: 29 ILGRSNVGKSTFINTLL--GKNLAKSSATP 56
>ref|NP_224034.1| DNA transfer protein [Helicobacter pylori J99]
Length = 304
Score = 24.6 bits (52), Expect = 5.2
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 25 RAGPFISENAVIKTEELEKTLKEMQAEDRDLKVGIIGRVKAGKSSLLNALI 75
R P E+ K E +LK + + ++ + G +GK+SLLNAL+
Sbjct: 112 RLKPLSLEDFTFKVSNPE-SLKNLALKGHNILIS--GETSSGKTSLLNALL 159
>ref|NP_223978.1| SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEIN [Helicobacter pylori
J99]
Length = 280
Score = 24.6 bits (52), Expect = 5.2
Identities = 10/37 (27%), Positives = 21/37 (56%)
Query: 116 ELKNEHARYEREFNRIVDEEVKRQKEKQSLSNRAKEG 152
E E A+ + ++ +++ ++K+KQ SN+ EG
Sbjct: 140 EEAKEEAKEKSVPKQVTTKDIVKEKDKQEESNKTSEG 176
>ref|NP_223831.1| aspartate-semialdehyde dehydrogenase [Helicobacter pylori J99]
Length = 346
Score = 24.6 bits (52), Expect = 5.2
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 340 VEKSRHHLPTALENAQKSLSSSLNKTMEA 368
+E ++ L TALE+ +K + LN+ ++A
Sbjct: 168 IESLKNELKTALEHLEKDPAIDLNQVLQA 196
>ref|NP_224143.1| putative [Helicobacter pylori J99]
Length = 235
Score = 24.3 bits (51), Expect = 6.8
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 346 HLPTALENAQKSLSSSLNKTMEALIQTNPNQRGIFEKAIKNGV 388
H T+LEN K L + + + IQT NQ +EK + +
Sbjct: 114 HQKTSLENRLKVLENYYRQVLREKIQTYINQ---YEKILNESI 153
>ref|NP_224125.1| N-UTILIZATION SUBSTANCE PROTEIN A [Helicobacter pylori J99]
Length = 395
Score = 24.3 bits (51), Expect = 6.8
Identities = 10/28 (35%), Positives = 18/28 (63%)
Query: 317 KESLQEIYFVASQADSAVLSMSEVEKSR 344
KES+QE + V + A + + ++EKS+
Sbjct: 314 KESIQERFIVNNHLQKAKVRLLDIEKSK 341
>ref|NP_224094.1| UBIQUINONE/MENAQUINONE BIOSYNTHESIS METHLYTRANSFERASE [Helicobacter
pylori J99]
Length = 246
Score = 24.3 bits (51), Expect = 6.8
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 32 ENAVIKTEELEKTLKEMQAEDRDLK 56
E A+ K EELE +QA+ +DLK
Sbjct: 97 ELAIKKCEELENKASFIQAQAKDLK 121
>ref|NP_222785.1| UREASE ACCESSORY PROTEIN [Helicobacter pylori J99]
Length = 199
Score = 24.3 bits (51), Expect = 6.8
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 55 LKVGIIGRVKAGKSSLLNAL 74
+K+G+ G V +GK++L+ AL
Sbjct: 2 VKIGVCGPVGSGKTALIEAL 21
>ref|NP_224054.1| putative [Helicobacter pylori J99]
Length = 274
Score = 23.9 bits (50), Expect = 8.8
Identities = 15/59 (25%), Positives = 28/59 (47%)
Query: 349 TALENAQKSLSSSLNKTMEALIQTNPNQRGIFEKAIKNGVILTSGACFSMYKDFKNQAS 407
T+LE + + LN ++ ++TNP + I + K SG+ F K+ + A+
Sbjct: 210 TSLECLKTYDRNELNDLLKPALRTNPALKDIESQLSKEWFFSGSGSAFFRLKNTQKGAN 268
>ref|NP_223894.1| PROTEIN-EXPORT MEMBRANE PROTEIN [Helicobacter pylori J99]
Length = 198
Score = 23.9 bits (50), Expect = 8.8
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 324 YFVASQADSAVLSMSEVEKSRHHLPTALENAQKSLSSSLNKTMEALIQ--TNP 374
YF + +VL ++ K L A +L+ +LN T+ L Q TNP
Sbjct: 70 YFYNKEYGKSVLDETKTNKELSPLVPATGTLNPTLNPTLNPTLNPLEQAPTNP 122
>ref|NP_223760.1| putative [Helicobacter pylori J99]
Length = 127
Score = 23.9 bits (50), Expect = 8.8
Identities = 9/21 (42%), Positives = 16/21 (75%)
Query: 190 SELEKDTKLVSSHDQYERMKK 210
SELEKD + ++D+++ +KK
Sbjct: 65 SELEKDLNMEVTNDEWDTIKK 85
>ref|NP_223509.1| phosphoheptose isomerase [Helicobacter pylori J99]
Length = 192
Score = 23.9 bits (50), Expect = 8.8
Identities = 11/27 (40%), Positives = 18/27 (65%)
Query: 350 ALENAQKSLSSSLNKTMEALIQTNPNQ 376
ALE + +SL +L +++ LI+T NQ
Sbjct: 16 ALEKSLESLQDALKQSVHLLIETLENQ 42
>ref|NP_223266.1| FLAGELLIN A [Helicobacter pylori J99]
Length = 510
Score = 23.9 bits (50), Expect = 8.8
Identities = 13/60 (21%), Positives = 26/60 (42%)
Query: 42 EKTLKEMQAEDRDLKVGIIGRVKAGKSSLLNALIFEGVEVLPKAATPMTASLTILKYAKT 101
E + E RD+ VK+ + NA+I G + L T + ++ ++ A++
Sbjct: 370 ESQVAETTVNLRDVTGNFNANVKSASGANYNAVIASGNQSLGSGVTTLRGAMVVIDIAES 429
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.310 0.126 0.335
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 448,326
Number of Sequences: 1491
Number of extensions: 20970
Number of successful extensions: 137
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 87
Number of HSP's gapped (non-prelim): 58
length of query: 443
length of database: 494,079
effective HSP length: 81
effective length of query: 362
effective length of database: 373,308
effective search space: 135137496
effective search space used: 135137496
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 50 (23.9 bits)