BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645583|ref|NP_207759.1| virulence associated
protein D (vapD) [Helicobacter pylori 26695]
(95 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223879.1| putative [Helicobacter pylori J99] 25 0.21
ref|NP_223569.1| putative IRON-REGULATED OUTER MEMBRANE PRO... 24 0.61
ref|NP_223547.1| putative [Helicobacter pylori J99] 24 0.61
ref|NP_223108.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [H... 24 0.61
ref|NP_223530.1| putative [Helicobacter pylori J99] 23 1.0
ref|NP_223629.1| putative [Helicobacter pylori J99] 22 1.8
ref|NP_224087.1| OCTAPRENYL-4-HYDROXYBENZOATE CARBOXY-LYASE... 22 2.3
ref|NP_224057.1| BIOPOLYMER TRANSPORT PROTEIN [Helicobacter... 22 2.3
ref|NP_222997.1| putative [Helicobacter pylori J99] 22 3.0
ref|NP_222891.1| LYSYL-TRNA SYNTHETASE [Helicobacter pylori... 22 3.0
ref|NP_224135.1| CHROMOSOMAL REPLICATION INITIATOR PROTEIN ... 21 3.9
ref|NP_224104.1| putative [Helicobacter pylori J99] 21 3.9
ref|NP_223094.1| HOMOSERINE KINASE [Helicobacter pylori J99] 21 3.9
ref|NP_223055.1| putative [Helicobacter pylori J99] 21 3.9
ref|NP_223350.1| putative HYDANTOIN UTILIZATION [Helicobact... 21 5.2
ref|NP_223762.1| putative [Helicobacter pylori J99] 20 6.7
ref|NP_223731.1| putative [Helicobacter pylori J99] 20 6.7
ref|NP_223645.1| putative [Helicobacter pylori J99] 20 6.7
ref|NP_223179.1| GLUTAMINE SYNTHETASE [Helicobacter pylori ... 20 8.8
>ref|NP_223879.1| putative [Helicobacter pylori J99]
Length = 190
Score = 25.4 bits (54), Expect = 0.21
Identities = 7/20 (35%), Positives = 17/20 (85%)
Query: 31 MEQHGFKWQQGSVYFGDETI 50
+++HG K++Q ++YF +E++
Sbjct: 16 LKEHGIKFEQKALYFDEESL 35
>ref|NP_223569.1| putative IRON-REGULATED OUTER MEMBRANE PROTEIN [Helicobacter pylori
J99]
Length = 815
Score = 23.9 bits (50), Expect = 0.61
Identities = 18/54 (33%), Positives = 26/54 (47%), Gaps = 3/54 (5%)
Query: 10 TNCLNENAVNLSKVYSDIRKFMEQHGFKWQQGSVYFGDE--TINAVTCVATVQI 61
++CL EN +L K YS ++ ++G FGD IN T + VQI
Sbjct: 306 SDCLFENDASLFKTYSVNLVHNVSLNYE-REGGSRFGDPKLKINGYTSIRNVQI 358
>ref|NP_223547.1| putative [Helicobacter pylori J99]
Length = 48
Score = 23.9 bits (50), Expect = 0.61
Identities = 15/47 (31%), Positives = 25/47 (52%), Gaps = 2/47 (4%)
Query: 2 YAVTFDLDTNCLNENAVNLSKVYSDIRKFMEQHGFKWQQGSVYFGDE 48
+ + F L L + L + + D+R+ +E GF+ QGSVY D+
Sbjct: 4 HVIAFGLKIEILKKYKRTL-QAHDDLRQ-LEPLGFENTQGSVYLKDQ 48
>ref|NP_223108.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 455
Score = 23.9 bits (50), Expect = 0.61
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 14 NENAVNLSKVYSDIRKFMEQHGFK 37
N N+VN+ + +++I K +Q G K
Sbjct: 179 NPNSVNIPQEFAEIYKLAKQSGMK 202
>ref|NP_223530.1| putative [Helicobacter pylori J99]
Length = 243
Score = 23.1 bits (48), Expect = 1.0
Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 15/100 (15%)
Query: 7 DLDTNCLNENAVNLSKVYSDIRKFMEQHGF-KWQQGSVYFGDETINAVTCV--ATVQILA 63
D++ + A K+YSD+ F QH Q + G +NA+ + + L
Sbjct: 88 DIEEILQSSEATKWEKIYSDVENF--QHDLASLDQVELRLGRTKLNAIRVEFDGSYRALL 145
Query: 64 KQIPSFAVCVKDV----------RMLKIEENNDLMPAIKI 93
+Q + D+ R+L ++ DL+PA+K+
Sbjct: 146 EQKQVDMLMGLDIQRIAFKKIADRILIFSKDTDLIPALKL 185
>ref|NP_223629.1| putative [Helicobacter pylori J99]
Length = 487
Score = 22.3 bits (46), Expect = 1.8
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 8 LDTNCLNENAVNLSKVYSDIRKFMEQH 34
LD LN N V +S +++K+ E H
Sbjct: 191 LDILILNPNDVKISLNEEEMKKYYENH 217
>ref|NP_224087.1| OCTAPRENYL-4-HYDROXYBENZOATE CARBOXY-LYASE [Helicobacter pylori
J99]
Length = 187
Score = 21.9 bits (45), Expect = 2.3
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 62 LAKQIPSFAVCVKDVRMLKIEENN 85
L K+I F V K+ ++ +EE+N
Sbjct: 23 LPKEIEIFVVASKNAHVVALEESN 46
>ref|NP_224057.1| BIOPOLYMER TRANSPORT PROTEIN [Helicobacter pylori J99]
Length = 133
Score = 21.9 bits (45), Expect = 2.3
Identities = 11/28 (39%), Positives = 14/28 (49%)
Query: 40 QGSVYFGDETINAVTCVATVQILAKQIP 67
+GS YF D+ I+ V LAK P
Sbjct: 65 KGSFYFDDKEISFENLKHKVSTLAKDTP 92
>ref|NP_222997.1| putative [Helicobacter pylori J99]
Length = 100
Score = 21.6 bits (44), Expect = 3.0
Identities = 10/29 (34%), Positives = 14/29 (47%)
Query: 15 ENAVNLSKVYSDIRKFMEQHGFKWQQGSV 43
EN + K +I K + Q GFK G +
Sbjct: 47 ENPIYCPKREQEILKRLSQRGFKHLNGEI 75
>ref|NP_222891.1| LYSYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 501
Score = 21.6 bits (44), Expect = 3.0
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 21 SKVYSDIRKFMEQHGF 36
S + S +RKF E GF
Sbjct: 177 SLIVSSVRKFFEMEGF 192
>ref|NP_224135.1| CHROMOSOMAL REPLICATION INITIATOR PROTEIN [Helicobacter pylori J99]
Length = 457
Score = 21.2 bits (43), Expect = 3.9
Identities = 6/15 (40%), Positives = 13/15 (86%)
Query: 19 NLSKVYSDIRKFMEQ 33
++SK+YS ++K +E+
Sbjct: 412 SISKMYSSVKKMLEE 426
>ref|NP_224104.1| putative [Helicobacter pylori J99]
Length = 203
Score = 21.2 bits (43), Expect = 3.9
Identities = 8/28 (28%), Positives = 14/28 (49%)
Query: 23 VYSDIRKFMEQHGFKWQQGSVYFGDETI 50
+Y+D ++ + GFK G + F I
Sbjct: 122 LYADFKRLSLERGFKEAFGDLMFSSRVI 149
>ref|NP_223094.1| HOMOSERINE KINASE [Helicobacter pylori J99]
Length = 293
Score = 21.2 bits (43), Expect = 3.9
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 60 QILAKQIPSFAVCVKD 75
Q+L+K+ P F V V D
Sbjct: 267 QVLSKKFPKFRVAVLD 282
>ref|NP_223055.1| putative [Helicobacter pylori J99]
Length = 778
Score = 21.2 bits (43), Expect = 3.9
Identities = 7/26 (26%), Positives = 14/26 (52%)
Query: 7 DLDTNCLNENAVNLSKVYSDIRKFME 32
+L + C+ N ++ +Y D K +E
Sbjct: 106 ELSSACIKLNELSFKDIYLDYEKHLE 131
>ref|NP_223350.1| putative HYDANTOIN UTILIZATION [Helicobacter pylori J99]
Length = 765
Score = 20.8 bits (42), Expect = 5.2
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 1 MYAVTFDLDTNCLNE 15
MYA +FDL LN+
Sbjct: 705 MYATSFDLSPRFLND 719
>ref|NP_223762.1| putative [Helicobacter pylori J99]
Length = 256
Score = 20.4 bits (41), Expect = 6.7
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 3 AVTFDLDTNCLNEN 16
A FD+D NC +N
Sbjct: 239 ACDFDIDKNCKKKN 252
>ref|NP_223731.1| putative [Helicobacter pylori J99]
Length = 201
Score = 20.4 bits (41), Expect = 6.7
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 9 DTNCLNENAVNLSKVYSDIRKFMEQH 34
+TN LN+ L K + +KF + H
Sbjct: 161 ETNHLNKEYNTLDKTRLNAQKFQDVH 186
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 20.4 bits (41), Expect = 6.7
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 6 FDLDTNCLNENAVNLSKVYSDIR 28
F+LDT+ + VN +SD++
Sbjct: 1625 FELDTSAQSYKMVNRFSKFSDVQ 1647
>ref|NP_223179.1| GLUTAMINE SYNTHETASE [Helicobacter pylori J99]
Length = 481
Score = 20.0 bits (40), Expect = 8.8
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 23 VYSDIRKFMEQHGFKWQQGSVYFGDETINAVT 54
+Y D M H W+ FG ET ++
Sbjct: 270 LYGDNGSGMHTHVSIWKNNENLFGGETYKGLS 301
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.323 0.136 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,092
Number of Sequences: 1491
Number of extensions: 3132
Number of successful extensions: 20
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of query: 95
length of database: 494,079
effective HSP length: 71
effective length of query: 24
effective length of database: 388,218
effective search space: 9317232
effective search space used: 9317232
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 40 (20.0 bits)