BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645588|ref|NP_207764.1| hypothetical protein
[Helicobacter pylori 26695]
(353 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223625.1| putative [Helicobacter pylori J99] 601 e-173
ref|NP_223830.1| putative [Helicobacter pylori J99] 34 0.007
ref|NP_223025.1| putative [Helicobacter pylori J99] 34 0.007
ref|NP_222894.1| putative [Helicobacter pylori J99] 33 0.008
ref|NP_223645.1| putative [Helicobacter pylori J99] 32 0.025
ref|NP_222831.1| putative [Helicobacter pylori J99] 32 0.025
ref|NP_223194.1| cag island protein [Helicobacter pylori J99] 32 0.032
ref|NP_222840.1| putative [Helicobacter pylori J99] 31 0.055
ref|NP_223159.1| putative [Helicobacter pylori J99] 30 0.094
ref|NP_223978.1| SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEI... 29 0.16
ref|NP_223770.1| putative [Helicobacter pylori J99] 29 0.21
ref|NP_222738.1| putative [Helicobacter pylori J99] 29 0.21
ref|NP_223773.1| putative [Helicobacter pylori J99] 28 0.27
ref|NP_223889.1| putative [Helicobacter pylori J99] 28 0.36
ref|NP_223761.1| putative [Helicobacter pylori J99] 27 0.61
ref|NP_223894.1| PROTEIN-EXPORT MEMBRANE PROTEIN [Helicobac... 27 0.80
ref|NP_222874.1| putative [Helicobacter pylori J99] 27 0.80
ref|NP_223387.1| putative [Helicobacter pylori J99] 27 1.0
ref|NP_222912.1| putative [Helicobacter pylori J99] 27 1.0
ref|NP_223507.1| putative abc transporter, ATP-binding prot... 26 1.4
ref|NP_223759.1| putative [Helicobacter pylori J99] 26 1.8
ref|NP_223333.1| ASPARTATE AMINOTRANSFERASE [Helicobacter p... 26 1.8
ref|NP_222889.1| APOLIPOPROTEIN N-ACYLTRANSFERASE [Helicoba... 26 1.8
ref|NP_223943.1| putative 30S RIBOSOMAL PROTEIN S8 [Helicob... 25 2.3
ref|NP_223283.1| DNA MISMATCH REPAIR PROTEIN [Helicobacter ... 25 3.0
ref|NP_223195.1| cag island protein [Helicobacter pylori J99] 25 3.0
ref|NP_223560.1| putative [Helicobacter pylori J99] 25 3.9
ref|NP_223405.1| putative [Helicobacter pylori J99] 25 3.9
ref|NP_224043.1| putative [Helicobacter pylori J99] 24 5.2
ref|NP_223373.1| DNA POLYMERASE III SUBUNITS GAMMA AND TAU ... 24 5.2
ref|NP_222882.1| putative PEPTIDYL-PROLYL CIS-TRANS ISOMERA... 24 5.2
ref|NP_223574.1| putative vacuolating cytotoxin (VacA) para... 24 6.7
ref|NP_223158.1| putative [Helicobacter pylori J99] 24 6.7
ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helico... 24 6.7
ref|NP_222827.1| putative [Helicobacter pylori J99] 23 8.8
ref|NP_222757.1| DNA transformation compentancy [Helicobact... 23 8.8
ref|NP_222748.1| putative [Helicobacter pylori J99] 23 8.8
>ref|NP_223625.1| putative [Helicobacter pylori J99]
Length = 362
Score = 601 bits (1549), Expect = e-173
Identities = 306/364 (84%), Positives = 321/364 (88%), Gaps = 13/364 (3%)
Query: 1 MKHLTPLTHTIFKALWLGTALSA--SLSLAATESPTKTEPKPAKGVKNKPKSPVTKVMMT 58
MKHL PL H FKALWLGTALS SL+L A E+PTKTEPKPAKGVKNKPKSPVT VMMT
Sbjct: 1 MKHLAPLIHIPFKALWLGTALSMFLSLNLNAEENPTKTEPKPAKGVKNKPKSPVTNVMMT 60
Query: 59 NCDNIKDFNAKQKEVLKAAYQFGSKENLGYEMAGIAWKESCAGVYKINFSDPSAGVYHSY 118
NCDN+KDFNAKQKEVLKAAYQFGSKENLGYEMAGIAWKESCAG YKINFSDPSAG+YH+Y
Sbjct: 61 NCDNLKDFNAKQKEVLKAAYQFGSKENLGYEMAGIAWKESCAGTYKINFSDPSAGIYHAY 120
Query: 119 IPSVLKSYGHNDSPFLRNVMGELLIKDDAFASEVALKELLYWKTRYHDNLKDMIKSYNKG 178
IPSVLKSYGHN+SPFLRNVMGELLIKDDAFASEVALKELLYWKTRYHDNLKDMIKSYNKG
Sbjct: 121 IPSVLKSYGHNNSPFLRNVMGELLIKDDAFASEVALKELLYWKTRYHDNLKDMIKSYNKG 180
Query: 179 SRWERSEKSNADAEKYYEEIQDRIRRLKESKIFDSQSSNDQELQKSANSNLDLDPIGNAM 238
SRWE++EK+NADAEKYYEEIQDRIRRLKESKIFDSQSSNDQELQKSANSNLDLDPIGNAM
Sbjct: 181 SRWEKNEKANADAEKYYEEIQDRIRRLKESKIFDSQSSNDQELQKSANSNLDLDPIGNAM 240
Query: 239 PQALIAKET--------KIEETQAEKSQEMKETTSEQTKSKP-EKAKDKPMYLAQINSTD 289
PQ L ET +IEE Q +KSQEMKE SEQ KP EK KDKPMYLAQINS D
Sbjct: 241 PQTLAQTETQKSQIEKSQIEEAQTQKSQEMKEAASEQAIKKPLEKEKDKPMYLAQINSAD 300
Query: 290 FTPVKKSPKKPAKVSQKHSFKNNIKNNVKNNAKTASKKQEMCKNCSPGQRNAILANHITL 349
F P KKSPKKPAK S K S KNNI +VK+N KTASK +E+CKNCSPGQRNAILANHITL
Sbjct: 301 FAPAKKSPKKPAKASPKRSSKNNI--SVKSNTKTASKNKEVCKNCSPGQRNAILANHITL 358
Query: 350 MQEL 353
MQEL
Sbjct: 359 MQEL 362
>ref|NP_223830.1| putative [Helicobacter pylori J99]
Length = 383
Score = 33.9 bits (76), Expect = 0.007
Identities = 61/284 (21%), Positives = 116/284 (40%), Gaps = 58/284 (20%)
Query: 68 AKQKEVLKAAYQFGSKENLGYEMAGIAWKESCAGVYK--INFSDPSAGVYHSYIPSVLKS 125
AK+K+V K N+G + GIA+ E+ K I SD G + LK+
Sbjct: 21 AKEKKVFK---------NVGISIMGIAFWEAIKDSIKKQIKKSDWICGNVKT-ADDYLKT 70
Query: 126 YGHNDSPFLRNVMG----ELLIKDDAFASEVALKELLYWKTRYHDNLKDMIKSYNKGSRW 181
+ ++ + + +G ++ + FA + + KE+ + + +N +D NK
Sbjct: 71 HPNS---WFNSAIGVTAITAMLMNVCFADDQSKKEVAQAQ-KEAENARDRA---NKSGIE 123
Query: 182 ERSEKSNADAEKYYEEIQDRIRRLKESKIFDSQSSNDQELQKSANSNLDLDPIGNAMPQA 241
E+ + EK E + + ++ K + +QE QK++N +
Sbjct: 124 LEQEEQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETN----------- 172
Query: 242 LIAKETKIEETQAEKSQEMKETTSEQTKSKPEKAKDKPMYLAQINSTDFTPVK------- 294
+ K+E+ Q +K+++ K+ T+ K KA+ Q N F K
Sbjct: 173 ---NQIKVEQEQ-QKTEQEKQKTNNTQKDLVNKAEQN----CQENHNQFFIKKLGIKAGI 224
Query: 295 --------KSPKKPAKVSQKHSFKNNIKNNVKNNAKTASKKQEM 330
K+P KP K +Q ++ N+ + +++ SK QE+
Sbjct: 225 AIEIEAECKTP-KPTKTNQTPIQPKHLPNSKQPHSQRGSKAQEL 267
>ref|NP_223025.1| putative [Helicobacter pylori J99]
Length = 501
Score = 33.9 bits (76), Expect = 0.007
Identities = 34/183 (18%), Positives = 83/183 (44%), Gaps = 14/183 (7%)
Query: 168 LKDMIKSYNKGSRWERSEKSNADAEKYYEEIQD----RIRRLKESKIFD-SQSSNDQELQ 222
+++++K + S + ++K + ++ E QD + KE + + ++ + Q L+
Sbjct: 278 MQELVKEIQENSNDQENKKETQETQENTETPQDIETQELEIPKEEETQEVAEKTQVQGLE 337
Query: 223 KSANSNL----DLDPIGNAMPQALIAKETKIEETQAEKSQEMKETTSE-QTKSKPEKAKD 277
K + ++ + PQ L A++ K++E + K + M+E+ Q K P++
Sbjct: 338 KEEIAETPQEKEIQETQDETPQELEAQDEKLQENETPKDESMQESAQNLQDKETPQEETQ 397
Query: 278 KPMYLAQINSTDFTPVK----KSPKKPAKVSQKHSFKNNIKNNVKNNAKTASKKQEMCKN 333
+ Y + + + K + P V++ + +N+ + +++ K +K+E K
Sbjct: 398 EDHYESIEDIPEPVMAKAMGEELPFLNEAVAKIPNNENDTETPKESDIKAPQEKEESDKT 457
Query: 334 CSP 336
SP
Sbjct: 458 SSP 460
Score = 33.5 bits (75), Expect = 0.008
Identities = 25/97 (25%), Positives = 43/97 (43%), Gaps = 4/97 (4%)
Query: 183 RSEKSNADAEKYYEEIQDRIRRLKESKIFDSQSSNDQELQKSANSNLDLDPIGNAMPQAL 242
+ E + ++ EE++++ ++ D + D E Q S D + Q
Sbjct: 178 QEEVKKEEVKEMQEEVKEKQKQEVAENPQDEEKPKDDETQGSVEPPKDEEVSKELETQEE 237
Query: 243 IAKETKIEETQAEKSQEMKETTSEQTKSKPEKAKDKP 279
+ ET EETQ + + +KE T E + K EK +D P
Sbjct: 238 L--ETPKEETQEQ--EPIKEETQEIKEEKQEKTQDSP 270
>ref|NP_222894.1| putative [Helicobacter pylori J99]
Length = 268
Score = 33.5 bits (75), Expect = 0.008
Identities = 23/83 (27%), Positives = 41/83 (48%), Gaps = 2/83 (2%)
Query: 253 QAEKSQEMKETTSEQTKSKPEKAKDKPMYLAQINSTDFTPVKKSPKKPAKVSQKHSFKNN 312
Q +++Q +TT E+ +S+ E +P+ ++ + K++P K KV+ K K
Sbjct: 109 QTDQAQMEMKTTEEKQESQKELKAVEPIPMSTQKESQAVAKKETPHKKPKVAPKD--KEA 166
Query: 313 IKNNVKNNAKTASKKQEMCKNCS 335
K+ K+ AK K+E K S
Sbjct: 167 HKDKAKHAAKEPKVKKEARKEVS 189
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 32.0 bits (71), Expect = 0.025
Identities = 52/226 (23%), Positives = 96/226 (42%), Gaps = 39/226 (17%)
Query: 143 IKDDAFASEVALKELLYWKTRYHDNLKD------MIKSYNKGSRWERSEKSNADAEKYYE 196
I+++ ASE + L + +D LKD ++K +++ + +K E
Sbjct: 245 IRNNTIASEPDFRSRLLEAIQNNDPLKDSIVGAQLLKDPTTKIFYDKFQLK-ISPKKVLE 303
Query: 197 EIQDRIRRLKES--------KIFDSQS------SNDQELQKSANSNLDLDPI--GNAMPQ 240
+++R+++ E+ + DSQ+ SN L + S + + + NA Q
Sbjct: 304 ILENRLKKSIETTNETLNAFNVLDSQAIDLNAISNSVGLNPTQESKITDNSVELNNAQEQ 363
Query: 241 ALIAKETKIEETQAEKSQEM---KETTSE-----QTKSKPEKAKDKPMYLAQINSTDFTP 292
+ T+ + TQ + +QE ++TT E QT + + ++ P + Q T TP
Sbjct: 364 TAQEQTTQEQTTQEQTTQEQTTQEQTTQEQTTQEQTTQEQDTQENAPTTIKQ--ETPITP 421
Query: 293 -VKKSPK---KPAKVSQKHSFKNNIKNNVK--NNAKTASKKQEMCK 332
+ +PK KP++ K K N+K K KQE+ K
Sbjct: 422 AIPLNPKIDFKPSEEVLIKGAKTRYKANIKAIELLKELQAKQEILK 467
Score = 23.9 bits (50), Expect = 6.7
Identities = 16/82 (19%), Positives = 33/82 (39%), Gaps = 5/82 (6%)
Query: 265 SEQTKSKPEKAKDKPMYLAQINSTDFTPVKKSPKKPAKVSQKHSFKNNIKNNVKNNAKTA 324
S +A P+ + ++ +K K +++H F + ++KNNA
Sbjct: 2014 SSNASEMKAEATGNPLIIEEVKLR--AEIKSEESKYKAFNKEHYFN---EESLKNNASKL 2068
Query: 325 SKKQEMCKNCSPGQRNAILANH 346
++ K+ QR+ I+ H
Sbjct: 2069 DYLKQELKDLETLQRSVIIPTH 2090
>ref|NP_222831.1| putative [Helicobacter pylori J99]
Length = 412
Score = 32.0 bits (71), Expect = 0.025
Identities = 36/158 (22%), Positives = 69/158 (42%), Gaps = 21/158 (13%)
Query: 182 ERSEKSNADAEKYYEEIQDRIRRLKESKIFDSQS--SNDQELQKSANSNLDLDPIGNAMP 239
+++ KS + E+ ++ L S+I Q +QE QK+ S ++L+
Sbjct: 155 QKTNKSEIELEQERQKTNKSGIELANSQIKAEQERQKTEQEKQKANKSEIELEQ------ 208
Query: 240 QALIAKETKIEETQAEKSQEMKETTSEQTKSKPEKAKDKPMYLAQINSTDFTPVK----- 294
++ K TQ + +E K+ E ++ EK + A+I + T +
Sbjct: 209 -----QKQKTINTQRDLIKEQKDFIKETEQNCQEKHGQLFIKKARIKTGITTGIAIEIEA 263
Query: 295 --KSPKKPAKVSQKHSFKNNIKNNVKNNAKTASKKQEM 330
K+PK PAK +Q ++ N+ + ++ SK QE+
Sbjct: 264 ECKTPK-PAKTNQTPIQPKHLPNSKQPRSQRGSKAQEL 300
>ref|NP_223194.1| cag island protein [Helicobacter pylori J99]
Length = 1819
Score = 31.6 bits (70), Expect = 0.032
Identities = 44/185 (23%), Positives = 78/185 (41%), Gaps = 24/185 (12%)
Query: 168 LKDM-IKSYNKGSRWERSEKSNADAEKYYEEIQDRIRRLKESKIFDS-QSSNDQELQKSA 225
L DM +K+Y R+EK + EK + ++L E++ D +++ E +K
Sbjct: 501 LADMSVKAYKDCVSRARNEKEKQECEKL---LTPEAKKLLENQALDCLKNAKTDEERKEC 557
Query: 226 NSNLDLDPIGNAMPQALIAKET--------KIEETQAEKSQEMKETTSEQTKSKPEKAKD 277
NL D + ++AKE+ +T+AEK + K T E K E+AK+
Sbjct: 558 LKNLPKD-----LQSDILAKESLKAYKDCASQAKTEAEKKECEKLLTPEAKKLLEEEAKE 612
Query: 278 K-PMYLAQINSTDFTPVKKSPKKPAKVSQKHSFKNNIKN-----NVKNNAKTASKKQEMC 331
YL ++ KK +K K + K+ + + AK ++++E
Sbjct: 613 SVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVRAYLDCVSKAKNEAERKECE 672
Query: 332 KNCSP 336
K +P
Sbjct: 673 KLLTP 677
Score = 30.8 bits (68), Expect = 0.055
Identities = 35/173 (20%), Positives = 60/173 (34%), Gaps = 17/173 (9%)
Query: 177 KGSRWERSEKSNADAEKYYEEIQDRIRRLKESKIFDSQSSNDQELQKSANSNLDLDPIGN 236
+ + E S+K+ D+ + + E + +S S+D L + D
Sbjct: 4 ENDKLETSKKAQQDSPQDLSNEEATEANHFEDLLKESTESSDNHLDNPTETKTHFD---- 59
Query: 237 AMPQALIAKETKIEETQAEKSQEMKETTSEQTKSKPEKAKDKPMYLAQINSTDFTPVKKS 296
E K+EETQ + ET+ S +K K L + FT K
Sbjct: 60 ---------EDKLEETQTQMDSGGNETSESSNGSLADKLFKKARKLVD-DKRPFTQQKSL 109
Query: 297 PKKPAKVSQKHSFKNNIKNNVKNNAKTASKKQEMCKNCSP---GQRNAILANH 346
++ K++++ +NN + E + SP A ANH
Sbjct: 110 DEETQKLNEEDDQENNEHQEETQTDLIDDETSEKTQQDSPQDLSNEEATEANH 162
>ref|NP_222840.1| putative [Helicobacter pylori J99]
Length = 285
Score = 30.8 bits (68), Expect = 0.055
Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 16/125 (12%)
Query: 165 HDNLKDMIKSYNKG-------SRWERSEKSNADAEKYYEEIQDRIRRL----KESKIFDS 213
H+ DM Y K S+ E++ K +A K EE ++ + + S +S
Sbjct: 146 HEQFGDMYDGYIKYLISMVRVSQKEKARKVDAIVLKKMEEQAEKDTKAAFQKRSSGELES 205
Query: 214 QSSNDQELQKSA---NSNLDLDPIGNAMPQALIAKETKIEETQAEKSQEMKETTSEQTKS 270
+ + + + S +SN DLDP+ NA L +K ET ++K ++ K+ K
Sbjct: 206 HTDSPEFISSSKTQNSSNPDLDPMTNA--NTLKETASKEPETSSKKEKKPKKKRRLSKKE 263
Query: 271 KPEKA 275
K ++A
Sbjct: 264 KQQQA 268
>ref|NP_223159.1| putative [Helicobacter pylori J99]
Length = 181
Score = 30.0 bits (66), Expect = 0.094
Identities = 24/98 (24%), Positives = 47/98 (47%), Gaps = 10/98 (10%)
Query: 140 ELLIKDDAF--ASEV--ALKELLYWKTRYHDNLKDMIKSYNK------GSRWERSEKSNA 189
E+L+ D F A+E+ +L+ + W + ++LK +K Y + S ++ A
Sbjct: 56 EVLLSLDFFKNANEIDSSLRNSIEWLSNAGESLKTKMKEYERFFSEFNTSMHANEQEVTA 115
Query: 190 DAEKYYEEIQDRIRRLKESKIFDSQSSNDQELQKSANS 227
E I+ I++L+ I +++ +QE QKS +
Sbjct: 116 TLNANTENIKSEIKKLENQLIEETRMLLEQETQKSVKA 153
>ref|NP_223978.1| SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEIN [Helicobacter pylori
J99]
Length = 280
Score = 29.3 bits (64), Expect = 0.16
Identities = 25/94 (26%), Positives = 36/94 (37%), Gaps = 15/94 (15%)
Query: 236 NAMPQALIAKETKIEETQAEKSQEMKETTSEQTKSKPEKAKDKPMYLAQINSTDFTPVKK 295
N A AK + + + +K + KE ++TK KP K K KP K
Sbjct: 63 NTKTNAESAKPKEEPKEKPKKEEPKKEEPKKETKPKP-KPKPKP--------------KP 107
Query: 296 SPKKPAKVSQKHSFKNNIKNNVKNNAKTASKKQE 329
PK K K + ++ K K KK+E
Sbjct: 108 KPKPKPKPEPKPKPEPKVEEPKKEEPKEEPKKEE 141
>ref|NP_223770.1| putative [Helicobacter pylori J99]
Length = 331
Score = 28.9 bits (63), Expect = 0.21
Identities = 28/113 (24%), Positives = 48/113 (41%), Gaps = 20/113 (17%)
Query: 184 SEKSNADAEKYYEEIQDRIRRLKESKIFDSQS---SNDQELQKSANSNLDLDPIGNAMPQ 240
S++ + A K +E+Q + + + D ++ +N Q +Q+ N ++ + + Q
Sbjct: 84 SQEESLRALKASQEVQANTLKQQSQTLEDLRNEIHANQQAIQQLDKQNKEMSELLTKLSQ 143
Query: 241 ------ALIAKETKIEETQAEKSQEMK-----------ETTSEQTKSKPEKAK 276
ALI K K +E +AEK + ET Q K EKAK
Sbjct: 144 DLVSQIALIQKALKEQEEKAEKPLKSSTPANKNPPLKAETPKNQEKKTQEKAK 196
>ref|NP_222738.1| putative [Helicobacter pylori J99]
Length = 469
Score = 28.9 bits (63), Expect = 0.21
Identities = 45/197 (22%), Positives = 84/197 (41%), Gaps = 24/197 (12%)
Query: 50 SPVTKVMMTNCD----NIKDFNAKQ-KEVLKAAYQFGSKENLGYEMAGIAW--KESCAGV 102
S + + +T C +++ FN +E K AY++ SK+ + + W + + +
Sbjct: 9 SVILGISLTGCIGYRMDLEHFNTLYYEESPKKAYEY-SKQFTKKKKNALLWDLQNGLSAL 67
Query: 103 YKINFSDPSAGVYHSYIPSVLKSYGHNDSPFLRNV--MGELLIKDDAFASEVALKE---L 157
Y ++ S GV + + + S F R +G +I D+ A + E +
Sbjct: 68 YARDYKT-SLGV----LDQAEQRFDKTQSAFTRGAGYVGATMINDNVRAYGGNIYEGVLI 122
Query: 158 LYWKTRYHDNLKDMIKSYNKGSRWERSEKSNADAEKYYEEIQDRIRRLKESK----IFDS 213
Y+K + L D K+ + +R +E+ E YYEE+Q I+ + SK +
Sbjct: 123 NYYKAIDYMLLNDSAKARVQFNR--ANERQRRAKEFYYEEVQKAIKEIDSSKKHNINMER 180
Query: 214 QSSNDQELQKSANSNLD 230
+ E+ + SNLD
Sbjct: 181 SRAEVSEILNNTYSNLD 197
>ref|NP_223773.1| putative [Helicobacter pylori J99]
Length = 263
Score = 28.5 bits (62), Expect = 0.27
Identities = 25/97 (25%), Positives = 46/97 (46%), Gaps = 12/97 (12%)
Query: 161 KTRYHDNLKDMIKSYNKGSRWERSEKS-NADAEKYYEEIQDRIRRLKESKIFDSQSSNDQ 219
K ++L+D+ S N E+++K+ D +K +E Q R+R + K Q+ +Q
Sbjct: 83 KEEPEESLEDIFSSLNDFQ--EKTDKNAQKDEQKNEQEEQRRLREQQRLK----QNQENQ 136
Query: 220 ELQKSANSNLD-----LDPIGNAMPQALIAKETKIEE 251
E+ K NL+ L+ + N I K+ ++E
Sbjct: 137 EMLKGLQQNLNQFTQKLESVKNKTLDLQIPKQDGVDE 173
Score = 25.0 bits (53), Expect = 3.0
Identities = 21/95 (22%), Positives = 41/95 (43%), Gaps = 8/95 (8%)
Query: 244 AKETKIEETQAEKSQEMKETTSE------QTKSKPEKAKDKPMYLAQINSTDFTPVKKSP 297
A + +E+ +EK E E +E + K +P++ ++ + + DF +K+
Sbjct: 48 AIDLNLEDLPSEKKNEKIEKVTEKQGDFLEPKEEPKEEPEESLEDIFSSLNDFQ--EKTD 105
Query: 298 KKPAKVSQKHSFKNNIKNNVKNNAKTASKKQEMCK 332
K K QK+ + + + K + QEM K
Sbjct: 106 KNAQKDEQKNEQEEQRRLREQQRLKQNQENQEMLK 140
>ref|NP_223889.1| putative [Helicobacter pylori J99]
Length = 219
Score = 28.1 bits (61), Expect = 0.36
Identities = 19/92 (20%), Positives = 36/92 (38%), Gaps = 5/92 (5%)
Query: 237 AMPQALIAKETKIEETQAEKSQEMKETTSEQTKSKPEKAKDKPMYLAQINSTDFTPVKKS 296
A+ A++ K + + E ET + + P++ + A +T+ P K +
Sbjct: 27 ALAHAVLGFYVKKDSAPMSPNVEKSETERQNSTFSPKEEAN-----ATTTATEQNPTKDT 81
Query: 297 PKKPAKVSQKHSFKNNIKNNVKNNAKTASKKQ 328
+QK K IK +K K K++
Sbjct: 82 VPPLDTATQKQEIKQEIKQEIKQEIKQEIKQE 113
Score = 25.4 bits (54), Expect = 2.3
Identities = 21/95 (22%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
Query: 233 PIGNAMPQALIAKETKIEETQAEKSQEMKETTSEQTKSKPEKAKDKPMYLAQINSTDFTP 292
P+ A + I +E K +E + E QE+K+ ++ K + ++ ++K Q + +
Sbjct: 84 PLDTATQKQEIKQEIK-QEIKQEIKQEIKQEIKQEIKQETKQEQEKENKPKQNSVSPVQN 142
Query: 293 VKKSPKKPAKVSQKHSFKNNIKN-NVKNNAKTASK 326
+K+P P + +K + NV+ T K
Sbjct: 143 DQKTPTTPLMGKKPLEYKVAVSGVNVRAFPSTKGK 177
>ref|NP_223761.1| putative [Helicobacter pylori J99]
Length = 1154
Score = 27.3 bits (59), Expect = 0.61
Identities = 47/240 (19%), Positives = 94/240 (38%), Gaps = 29/240 (12%)
Query: 45 KNKPKSPVTKVMMTNCDNIKDFNAKQKEVLKAAYQFGSKENLGYEMAGIAWKESCAGVYK 104
KN K + K + +KD N K E ++A+ + ++ + G+ G
Sbjct: 119 KNNKKMIIEKASNKELELLKDANFKHPENIRASLDHDAIAHI-LKRHGVNSVNVKNGESP 177
Query: 105 INFSDPSAGVY-HSYIPSVLKSYGHNDSPFL---RNVMGELLIKDDAFASEVALKELLYW 160
I + D + Y + ++L++ + D + + + G ++ + A + K L
Sbjct: 178 ITYEDIANYRYIVNNADAILRTLDNEDKEVISAFKQINGYAVVVEQA----INKKNELVL 233
Query: 161 KTRYHDNLKDMIKSYNKGSRWERSEKSNADAEKYY---------EEIQDRIRRLKESKIF 211
KT Y N K N ++ + NADA+ + E + + +E +
Sbjct: 234 KTMYKSN--GDYKDNNAYKKFSSTLTLNADAKVNHGLSSHSGATENLTQKPLTSQEDLLK 291
Query: 212 DSQSSNDQELQKSANSNLDLDPIGNAMPQALIAKETKIEETQAEKSQEMKETTSEQTKSK 271
D+++ N+ + + S L+L A K K+E Q + QE + ++ K K
Sbjct: 292 DTENLNETTPKPTHLSPLEL---------ANAEKLAKLESEQLQSEQEFLKAKEQELKRK 342
Score = 24.3 bits (51), Expect = 5.2
Identities = 28/97 (28%), Positives = 41/97 (41%), Gaps = 12/97 (12%)
Query: 166 DNLKDMIKSYNKGSRWERSEKSNADAEKYYEEIQDRIRRLKESKIFDSQSSNDQELQKSA 225
++LKD+ + + K S + EKS+ A E + I R FD S E KS
Sbjct: 657 ESLKDLSEKFYKTSSLDMFEKSDQRASDISEILGGAIARFAR---FDDPSKALFEALKS- 712
Query: 226 NSNLDLDPIGNAMPQALIAKETKIEETQAEKSQEMKE 262
D I + + IA TK + KS+E K+
Sbjct: 713 ------DNIKKGLKEFKIADVTK--DMFDPKSKEFKD 741
>ref|NP_223894.1| PROTEIN-EXPORT MEMBRANE PROTEIN [Helicobacter pylori J99]
Length = 198
Score = 26.9 bits (58), Expect = 0.80
Identities = 23/59 (38%), Positives = 29/59 (48%), Gaps = 8/59 (13%)
Query: 264 TSEQTKSKPEKAKDKPMYLAQINSTDFTPVKKSPKKPAKVSQKHSFKNNIKNNVKNNAK 322
T T + E+A P+ Q TP K+ PK+PAK S K N KN KN+AK
Sbjct: 107 TLNPTLNPLEQAPTNPLMPTQ------TP-KELPKEPAKTPFVESPKQNEKNE-KNDAK 157
Score = 26.2 bits (56), Expect = 1.4
Identities = 30/139 (21%), Positives = 55/139 (38%), Gaps = 16/139 (11%)
Query: 192 EKYYEEIQDRIRRLKE-SKIFDSQSSNDQELQKSANSNLDLDPIGNAMPQALIAKETKIE 250
++Y + + D + KE S + + + + L + N L+ P+ A L+ +T E
Sbjct: 74 KEYGKSVLDETKTNKELSPLVPATGTLNPTLNPTLNPTLN--PLEQAPTNPLMPTQTPKE 131
Query: 251 ETQAEKSQEMKETTSEQTKSKPEKAKDKPMYLAQINSTDFTPVKKSPKKPAKVSQKHSFK 310
+ E+ + K++ AK+ + + N K++ K P QK
Sbjct: 132 LPKEPAKTPFVESPKQNEKNEKNDAKENGIKGVEKN-------KENAKTPPTTHQKP--- 181
Query: 311 NNIKNNVKNNAKTASKKQE 329
K + NA T KK E
Sbjct: 182 ---KTHATTNAHTNQKKDE 197
>ref|NP_222874.1| putative [Helicobacter pylori J99]
Length = 157
Score = 26.9 bits (58), Expect = 0.80
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 8/78 (10%)
Query: 190 DAEKYYEEIQDRIRRLKESKIFDSQSSNDQELQKSANSNLDLDPIGNAMPQALIAKETKI 249
+ EK + I D +++ F S+ Q S N+N L+P A + +
Sbjct: 17 EIEKMAKTIDDGFNTAQKTPSFFKTPSHLQNTPNSKNANTPLEPKN--------AAKIET 68
Query: 250 EETQAEKSQEMKETTSEQ 267
+E E+ +E KE +E+
Sbjct: 69 QEKITEEKEEAKEIITEE 86
>ref|NP_223387.1| putative [Helicobacter pylori J99]
Length = 371
Score = 26.6 bits (57), Expect = 1.0
Identities = 39/191 (20%), Positives = 67/191 (34%), Gaps = 44/191 (23%)
Query: 144 KDDAFASEVALKELLYWKTRYHDNLKDMIKSYNKGSRWERSEKSNADAEKYYEEIQDRIR 203
K F + ELLY ++ + ++ + + K SR + + + A K EE+Q+ I+
Sbjct: 37 KKQKFLKDFKAGELLY-QSHFKPLVEFIAEELLKNSRAKIIQSNCNKALKVVEELQNTIK 95
Query: 204 RLKESKIFDSQSSNDQELQKSANSNLDLDP------------------------------ 233
E +I D QE Q+ A NLD
Sbjct: 96 TTIEKQI-DPGIKETQEHQQEARFNLDRSTDKFISDLEKSAFSKINQFEFNFRKEMHERI 154
Query: 234 ---IGNAMPQALIAKETK---------IEETQAEKSQEMKETTSEQTKSKPEKAKDKPMY 281
IGN + + E K IE E ++ + + + + E+ KD
Sbjct: 155 ERGIGNNECKEIFGNELKQRKTKLIEDIERRFKECEEQFRGSVGKNIEQLEERVKDSLAI 214
Query: 282 LAQINSTDFTP 292
+ +IN+ P
Sbjct: 215 IKRINNLGLNP 225
>ref|NP_222912.1| putative [Helicobacter pylori J99]
Length = 916
Score = 26.6 bits (57), Expect = 1.0
Identities = 46/204 (22%), Positives = 77/204 (37%), Gaps = 46/204 (22%)
Query: 161 KTRYHDNLKDMIKSYNKGSRWERSEKSNADAEKYYEEIQDRIRRLKESKIFDSQSSNDQE 220
KT D +K++ + Y ++R + ++EI+ R KES I + ++ E
Sbjct: 194 KTEIKDIIKEIDEKYPINENFKRQFNEFESNIEKHDEIKKDFERNKESLIREIENHCKNE 253
Query: 221 LQKSANSNLDLDPIGNAMPQALIAKETKIEETQAEKSQEMK---ETTSEQTKSKPEKAKD 277
N + +P E KI + Q K E+ + SK K+
Sbjct: 254 ------CNSEEEP------------EYKINDLLKNIQQICKNYIESHAVNDVSKDIKSMM 295
Query: 278 KPMYLAQIN------------STDFTPVKKSPKKPAKVSQKHS----FKNN---IKNNVK 318
YL QI+ S F P+++S + K+ S F N IK+ +
Sbjct: 296 CQFYLKQIDLLVNSEIVRYRYSNLFEPIQRSLWESIKILDNESGIYLFPKNIGEIKDKFE 355
Query: 319 NN------AKTASKKQEMCKNCSP 336
N +K S+ E C+ C+P
Sbjct: 356 ANKEKFKQSKNVSEFAEYCRECNP 379
>ref|NP_223507.1| putative abc transporter, ATP-binding protein [Helicobacter pylori
J99]
Length = 533
Score = 26.2 bits (56), Expect = 1.4
Identities = 24/108 (22%), Positives = 42/108 (38%), Gaps = 13/108 (12%)
Query: 242 LIAKETKIEETQAEKSQEMKETTSEQTKSKPEKAKDKPMYLAQINSTDFTPVKKSPKKPA 301
LIAK+ + E + K +E E + + KAK Q++ D + S ++
Sbjct: 248 LIAKQQEAERNKKLKEKEELEKFIARFSANASKAKQATSRQKQLDKLDIQSLAISSRRDP 307
Query: 302 KVSQKHSFKNNIKNNVKNNAKTASKKQEMCKNCSPGQRNAILANHITL 349
+ K K + N A C+N S + I+ N ++L
Sbjct: 308 SIIFKP------KRTIGNEALE-------CENISKSYDDQIVLNQVSL 342
>ref|NP_223759.1| putative [Helicobacter pylori J99]
Length = 267
Score = 25.8 bits (55), Expect = 1.8
Identities = 42/198 (21%), Positives = 75/198 (37%), Gaps = 59/198 (29%)
Query: 140 ELLIKDDAF--ASEV--ALKELLYWKTRYHDNLKDMIKSYNK----------GSRWERSE 185
E+L+ D F A+E+ +L+ + W T ++LK +K Y + + E +
Sbjct: 56 EVLLSLDFFKNANEIDSSLRNSIEWLTNAGESLKLKMKEYERFFSEFNTSMHANEQEVTN 115
Query: 186 KSNADAEKYYEEIQDRIRRLKES--------KIFDSQSSNDQELQKSANSNLDLDPI--- 234
NA+AE EI+ +L E+ +IF +Q+ ++ Q + N L+ I
Sbjct: 116 TLNANAENIKSEIKKLENQLIETTTRLLTSYQIFLNQARDNANNQITKNKTQSLEAITQA 175
Query: 235 ------------------------------GNAMPQALI----AKETKIEETQAEKSQEM 260
N QA+ AKE+ + A K + +
Sbjct: 176 KNNANNEISNNQTQAITNITEAKTNANNEISNNQTQAITNINEAKESATTQINANKQEAI 235
Query: 261 KETTSEQTKSKPEKAKDK 278
T E+T++ E + K
Sbjct: 236 NNITQEKTQATSEITEAK 253
>ref|NP_223333.1| ASPARTATE AMINOTRANSFERASE [Helicobacter pylori J99]
Length = 390
Score = 25.8 bits (55), Expect = 1.8
Identities = 17/73 (23%), Positives = 31/73 (42%)
Query: 241 ALIAKETKIEETQAEKSQEMKETTSEQTKSKPEKAKDKPMYLAQINSTDFTPVKKSPKKP 300
A IA T +E +++ + + E P+ KD + T +TPV P+
Sbjct: 14 ATIAISTLAKELKSQGKDILSFSAGEPDFDTPQAIKDAAIKALNDGFTKYTPVAGIPELL 73
Query: 301 AKVSQKHSFKNNI 313
++ K +NN+
Sbjct: 74 KAIAFKLKKENNL 86
>ref|NP_222889.1| APOLIPOPROTEIN N-ACYLTRANSFERASE [Helicobacter pylori J99]
Length = 425
Score = 25.8 bits (55), Expect = 1.8
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 296 SPKKPAKVSQKHSFKNNIKNNVKNNAKTASKKQE 329
S + P + ++ NNI+NN+ K A KQ+
Sbjct: 202 STRTPQDLKFDSNYLNNIENNILKEIKLAQSKQK 235
>ref|NP_223943.1| putative 30S RIBOSOMAL PROTEIN S8 [Helicobacter pylori J99]
Length = 131
Score = 25.4 bits (54), Expect = 2.3
Identities = 24/83 (28%), Positives = 36/83 (42%), Gaps = 3/83 (3%)
Query: 63 IKDFNAKQKEVLKAAYQFGSKENLGYEMAGIAWKESCAG--VYK-INFSDPSAGVYHSYI 119
IKDFN K K+ ++ Y + + G+ + S G VYK N Y +
Sbjct: 45 IKDFNVKDKDKKQSVYVQLAYDEKGHSKISEVKRLSKPGRRVYKQKNELKRFKNGYGVIV 104
Query: 120 PSVLKSYGHNDSPFLRNVMGELL 142
S K N+ + +NV GE+L
Sbjct: 105 VSTSKGVITNEEAYRQNVGGEVL 127
>ref|NP_223283.1| DNA MISMATCH REPAIR PROTEIN [Helicobacter pylori J99]
Length = 762
Score = 25.0 bits (53), Expect = 3.0
Identities = 21/88 (23%), Positives = 38/88 (42%), Gaps = 7/88 (7%)
Query: 140 ELLIKDDAFASEVALKELLYWKTRYHDNLKDMIKSYNKGSRWERSEKSNADAEKYYEEIQ 199
E +K+ L E+ K +H ++ KSY + +SE ++ D ++EI
Sbjct: 538 ENALKEQEDLKNAWLLEMEKQKEIFHHKKLELEKSYQQALNILKSEVASKDTSSMHKEIH 597
Query: 200 DRIRRLKESKIFDSQSSNDQELQKSANS 227
K S+I + + DQE+ + S
Sbjct: 598 ------KASEILNKHKT-DQEIPQIITS 618
>ref|NP_223195.1| cag island protein [Helicobacter pylori J99]
Length = 522
Score = 25.0 bits (53), Expect = 3.0
Identities = 29/126 (23%), Positives = 52/126 (41%), Gaps = 16/126 (12%)
Query: 206 KESKIFDSQSSNDQELQKSANSNLDL-DPIGNAMPQALIAKETKIEETQAEKSQEMKETT 264
KE+ F + + QE K+ +D DP + + KE + +E QA+K+Q+ K
Sbjct: 110 KEAVNFALMTRDYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKE-QAQKAQKDK--- 165
Query: 265 SEQTKSKPEKAKDKPMYLAQINSTDFTPVKKSPKKPAKVSQKHSFKNNIKNNVKNNAKTA 324
+ K K E+AK N + + + P +S + IK +N
Sbjct: 166 --REKRKEERAK---------NRANLENLTNAMSNPQNLSNNKNLSELIKQQRENELDQM 214
Query: 325 SKKQEM 330
+ ++M
Sbjct: 215 ERLEDM 220
>ref|NP_223560.1| putative [Helicobacter pylori J99]
Length = 524
Score = 24.6 bits (52), Expect = 3.9
Identities = 27/137 (19%), Positives = 52/137 (37%), Gaps = 14/137 (10%)
Query: 212 DSQSSNDQELQKSANSNLDLDPIGNAMPQALIAKETKIEETQAEKSQEMKETTSEQTKSK 271
+ + ++E N+ P+ A+ I ++ + + + EK+ +T + +
Sbjct: 251 EKKEPQNKEHANPPNNEKKTPPLKEALQMNAIKRDKTLSKKKPEKTPIHAKTQTIAPSAT 310
Query: 272 PEKAKDKPMYLAQI----------NSTDFTPVKKSPKKPAKVSQKHSFK--NNIKNNVKN 319
PE A P+ + N TP++K K K K N+ +V+N
Sbjct: 311 PENAPKIPLKTLPLMPLIGANPPPNDNAPTPLEKEEKTKEISDNKEKAKETNSSAQSVQN 370
Query: 320 NAKTASKKQEMCKNCSP 336
AS K K+ +P
Sbjct: 371 T--QASDKTSDNKSTTP 385
>ref|NP_223405.1| putative [Helicobacter pylori J99]
Length = 400
Score = 24.6 bits (52), Expect = 3.9
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 243 IAKETKIEETQAEKSQEMKETTSEQTKSKPEKAKDKPMYLAQINSTDFTPVKKSPKK 299
IAK+ + +ET +K+ E K + + S E + K + +I +KKS +K
Sbjct: 23 IAKDIQHKETLLKKTHEEKNQLNSRLSSLGEAIRSKELQKVEI-ERQMVALKKSLEK 78
>ref|NP_224043.1| putative [Helicobacter pylori J99]
Length = 357
Score = 24.3 bits (51), Expect = 5.2
Identities = 20/95 (21%), Positives = 42/95 (44%)
Query: 135 RNVMGELLIKDDAFASEVALKELLYWKTRYHDNLKDMIKSYNKGSRWERSEKSNADAEKY 194
+ VM E L+ D S K+LL + ++ + ++GS++ER +A
Sbjct: 263 KRVMFEYLLIKDLNDSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFAD 322
Query: 195 YEEIQDRIRRLKESKIFDSQSSNDQELQKSANSNL 229
+ + + ++ESK D +++ Q +K +
Sbjct: 323 FLNAKGLLCTIRESKALDIEAACGQLREKKLQQKI 357
>ref|NP_223373.1| DNA POLYMERASE III SUBUNITS GAMMA AND TAU [Helicobacter pylori J99]
Length = 582
Score = 24.3 bits (51), Expect = 5.2
Identities = 28/147 (19%), Positives = 56/147 (38%), Gaps = 23/147 (15%)
Query: 138 MGELLIKDDAFASEVALKELLYWKTRYHDNLKDMIKS------------YNKGSRWERSE 185
+G + K+ F + + L W++ D K++++ + KG + +
Sbjct: 418 LGAVFEKNIRFIDFDSQTKTLTWESLATDKDKELLRERFKIVKSIVDGVFGKGENIKIAL 477
Query: 186 KSNADAEKYYEEIQDRIRRLKESKIFDSQSSNDQELQKSANSNLDLDPIGNAMPQALIAK 245
K + + + EE ++ +KE K + E + +G A+
Sbjct: 478 KHHLENKSAPEETKE----VKEFKFPPLKPKLTTETTAEMQEKETKEAVGKAL------- 526
Query: 246 ETKIEETQAEKSQEMKETTSEQTKSKP 272
+TK +T+ + E KET Q K P
Sbjct: 527 QTKENDTKEVQENETKETKEAQPKEAP 553
>ref|NP_222882.1| putative PEPTIDYL-PROLYL CIS-TRANS ISOMERASE [Helicobacter pylori
J99]
Length = 299
Score = 24.3 bits (51), Expect = 5.2
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 215 SSNDQELQKSANSNLDLDPIGNAMPQALI--AKETKIEETQAEKSQEMKET 263
+ +D ++ K N N D D + +ALI A T + E +A K++++ +T
Sbjct: 54 TKSDFDMIKQRNPNFDFDKLKEKEKEALIEQAIRTALVENEA-KAEKLNQT 103
>ref|NP_223574.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2399
Score = 23.9 bits (50), Expect = 6.7
Identities = 24/100 (24%), Positives = 37/100 (37%), Gaps = 11/100 (11%)
Query: 232 DPIGNAMPQALIAKETKIEETQAEKSQEMKETTSE--------QTKSKPEKAKDKPMYLA 283
DPI N L +I+ Q+ S + +TK P A P YL
Sbjct: 1979 DPINNPQAPTLKQYIAQIQGVQSVDSIDQAGGNQAINWLNKIFETKGSPLFA---PYYLE 2035
Query: 284 QINSTDFTPVKKSPKKPAKVSQKHSFKNNIKNNVKNNAKT 323
++ D T + +V +FKN+ N ++ N T
Sbjct: 2036 SHSTKDLTTIAGDIANTLEVIANPNFKNDATNILQINTYT 2075
>ref|NP_223158.1| putative [Helicobacter pylori J99]
Length = 912
Score = 23.9 bits (50), Expect = 6.7
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 166 DNLKDMIKSYNKGSRWERSEKSNADAEKYYEEIQDRIRRLKESKIFDSQSSNDQELQKSA 225
++LKD+ + + K S + EKS+ A E + I R FD S E KS
Sbjct: 577 ESLKDLSEKFYKTSSLDMFEKSDQSASDISEILGGAIARFAR---FDDPSKALFESLKSD 633
Query: 226 N 226
N
Sbjct: 634 N 634
>ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helicobacter pylori J99]
Length = 949
Score = 23.9 bits (50), Expect = 6.7
Identities = 11/46 (23%), Positives = 20/46 (42%)
Query: 21 LSASLSLAATESPTKTEPKPAKGVKNKPKSPVTKVMMTNCDNIKDF 66
L+ S + TK +PKP K + K ++P + + + F
Sbjct: 87 LAKKASKTPKKEETKAQPKPKKTKEKKKEAPAPIIKKKEIEIVNTF 132
>ref|NP_222827.1| putative [Helicobacter pylori J99]
Length = 627
Score = 23.5 bits (49), Expect = 8.8
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 45 KNKPKSPVTKVMMTNCD---NIKDFNAKQKEVLKAA 77
K+KPK P+ + T + N+K K +E++K A
Sbjct: 466 KSKPKPPINLIYPTQSEQAKNLKIAKKKCEEIIKYA 501
>ref|NP_222757.1| DNA transformation compentancy [Helicobacter pylori J99]
Length = 328
Score = 23.5 bits (49), Expect = 8.8
Identities = 11/31 (35%), Positives = 18/31 (57%)
Query: 299 KPAKVSQKHSFKNNIKNNVKNNAKTASKKQE 329
KP K +Q++ +N K+ KNN +K+E
Sbjct: 168 KPQKENQENMSENAPKDAQKNNKPLKEEKEE 198
>ref|NP_222748.1| putative [Helicobacter pylori J99]
Length = 565
Score = 23.5 bits (49), Expect = 8.8
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 63 IKDFNAKQKEVLKAAYQFGSK 83
IKDF ++E+L AY+ G K
Sbjct: 108 IKDFTQDERELLVEAYKSGYK 128
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.309 0.124 0.347
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 377,609
Number of Sequences: 1491
Number of extensions: 18142
Number of successful extensions: 114
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 61
Number of HSP's gapped (non-prelim): 58
length of query: 353
length of database: 494,079
effective HSP length: 79
effective length of query: 274
effective length of database: 376,290
effective search space: 103103460
effective search space used: 103103460
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 49 (23.5 bits)