BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645590|ref|NP_207766.1| Glu-tRNA(Gln)
amidotransferase, subunit C (gatC) [Helicobacter pylori 26695]
(93 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223627.1| GLU-TRNA AMIDOTRANSFERASE, SUBUNIT C [Heli... 170 5e-45
ref|NP_223025.1| putative [Helicobacter pylori J99] 25 0.21
ref|NP_223321.1| GLU-TRNA AMIDOTRANSFERASE, SUBUNIT B [Heli... 25 0.36
ref|NP_223977.1| BIOPOLYMER TRANSPORT EXBD PROTEIN [Helicob... 23 0.80
ref|NP_223072.1| COPPER-TRANSPORTING P-TYPE ATPASE [Helicob... 23 1.4
ref|NP_223519.1| LIPID-A-DISACCHARIDE SYNTHASE [Helicobacte... 22 1.8
ref|NP_223223.1| BETA-KETOACYL-ACP SYNTHASE I [Helicobacter... 22 1.8
ref|NP_222759.1| phosphomannose isomerase/GDP-mannose pyrop... 22 1.8
ref|NP_223797.1| VALYL-TRNA SYNTHETASE [Helicobacter pylori... 22 2.3
ref|NP_222835.1| TRANSLATION INITIATION FACTOR IF-3 [Helico... 22 3.0
ref|NP_224088.1| putative [Helicobacter pylori J99] 21 4.0
ref|NP_223645.1| putative [Helicobacter pylori J99] 21 4.0
ref|NP_222887.1| sialic acid synthase [Helicobacter pylori ... 21 4.0
ref|NP_223257.1| SUBUNIT OF 2-OXOGLUTARATE OXIDOREDUCTASE [... 21 5.2
ref|NP_223849.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 20 6.8
ref|NP_223427.1| putative PROBABLE N-ACETYLMURAMOYL-L-ALANI... 20 6.8
ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helico... 20 6.8
ref|NP_224115.1| putative [Helicobacter pylori J99] 20 8.9
ref|NP_224015.1| putative TYPE III RESTRICTION ENZYME [Heli... 20 8.9
ref|NP_223518.1| TRANSCRIPTION ELONGATION FACTOR (TRANSCRIP... 20 8.9
>ref|NP_223627.1| GLU-TRNA AMIDOTRANSFERASE, SUBUNIT C [Helicobacter pylori J99]
Length = 93
Score = 170 bits (430), Expect = 5e-45
Identities = 86/93 (92%), Positives = 88/93 (94%)
Query: 1 MQIDDALLQRLEKLSMLEIKDEHKESVKGHLAEVLGFVENIFALETSALKTDIELCTPLR 60
MQIDDALLQRLEKLSMLEIKDEHKESVKGHLAEVLGFVENIFALET+ LKTD L TPLR
Sbjct: 1 MQIDDALLQRLEKLSMLEIKDEHKESVKGHLAEVLGFVENIFALETNNLKTDTHLSTPLR 60
Query: 61 EDEPKSQPNTAKEILSQNKHSQDHYFVVPKIIE 93
EDEPKSQP+ AKEILSQNKHSQDHYFVVPKIIE
Sbjct: 61 EDEPKSQPHIAKEILSQNKHSQDHYFVVPKIIE 93
>ref|NP_223025.1| putative [Helicobacter pylori J99]
Length = 501
Score = 25.4 bits (54), Expect = 0.21
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 12/87 (13%)
Query: 4 DDALLQRLEKLSMLEIKD---EHKESV----KGHLAE--VLGFVENIFA--LETSALKT- 51
DD L++L+++ LE+K+ ++K SV KG+ A+ + GF I L T LK
Sbjct: 51 DDECLEKLDQVDWLELKETISQNKNSVCMYKKGNEAQPFLEGFEMKIKKPFLPTEMLKVL 110
Query: 52 DIELCTPLREDEPKSQPNTAKEILSQN 78
+L + E EP + +EIL N
Sbjct: 111 QKKLGSNASELEPSQNLDPTQEILETN 137
>ref|NP_223321.1| GLU-TRNA AMIDOTRANSFERASE, SUBUNIT B [Helicobacter pylori J99]
Length = 474
Score = 24.6 bits (52), Expect = 0.36
Identities = 18/63 (28%), Positives = 28/63 (43%)
Query: 15 SMLEIKDEHKESVKGHLAEVLGFVENIFALETSALKTDIELCTPLREDEPKSQPNTAKEI 74
SML + + K SV E+LG ++ LE + R DE K +AK++
Sbjct: 331 SMLNLGVKAKTSVTWLCVELLGRLKAEVTLENCGISAHALGALAKRIDEGKISGKSAKDV 390
Query: 75 LSQ 77
L +
Sbjct: 391 LDR 393
>ref|NP_223977.1| BIOPOLYMER TRANSPORT EXBD PROTEIN [Helicobacter pylori J99]
Length = 129
Score = 23.5 bits (49), Expect = 0.80
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 41 IFALETSALKTDIELCTPLREDEPKSQPNTAK-EILSQNKHSQDHYFVVPK 90
+ ++ T + I++ P ++ KSQPN K ++S ++H D+ FV K
Sbjct: 26 VLSISTFIAQGKIKVSLPNAKNAEKSQPNDQKVVVISVDEH--DNIFVDDK 74
>ref|NP_223072.1| COPPER-TRANSPORTING P-TYPE ATPASE [Helicobacter pylori J99]
Length = 745
Score = 22.7 bits (47), Expect = 1.4
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Query: 12 EKLSMLEIKDEHKESVKGHLAEVLGFVENIFAL----ETSALKTDIELCTP--LREDEPK 65
E L ++D K+ VK H+A++ N F L + K +EL + +P+
Sbjct: 551 ELLGAFVLEDLPKKGVKEHIAQIKNLGINTFLLSGDNRENVKKCALELGIDGYISNAKPQ 610
Query: 66 SQPNTAKEILSQNK 79
+ N KE+ + +
Sbjct: 611 DKLNKIKELKEKGR 624
>ref|NP_223519.1| LIPID-A-DISACCHARIDE SYNTHASE [Helicobacter pylori J99]
Length = 360
Score = 22.3 bits (46), Expect = 1.8
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 71 AKEILSQNKHSQDHYFVVPKI 91
AK+I Q+ H + Y+++P++
Sbjct: 91 AKKIKKQDPHKKIMYYILPQV 111
>ref|NP_223223.1| BETA-KETOACYL-ACP SYNTHASE I [Helicobacter pylori J99]
Length = 412
Score = 22.3 bits (46), Expect = 1.8
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 6/54 (11%)
Query: 26 SVKGHLAEVLGF------VENIFALETSALKTDIELCTPLREDEPKSQPNTAKE 73
S KG + LG V +I A+ L I TP E + PNTA+E
Sbjct: 334 STKGQIGHCLGAAGALEAVISIMAMNQGILPPTINQETPDPECDLDYIPNTARE 387
>ref|NP_222759.1| phosphomannose isomerase/GDP-mannose pyrophosphorylase
[Helicobacter pylori J99]
Length = 470
Score = 22.3 bits (46), Expect = 1.8
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 1 MQIDDALLQRLEKLSMLEI 19
M ID AL+Q+ K+ M+E+
Sbjct: 242 MSIDIALMQQSHKIKMVEL 260
>ref|NP_223797.1| VALYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 872
Score = 21.9 bits (45), Expect = 2.3
Identities = 21/85 (24%), Positives = 34/85 (39%), Gaps = 13/85 (15%)
Query: 8 LQRLEKLSMLEIKDEHKESVKGHLAEVLGFVENIFALETSALKTDIELCTPLREDEPKSQ 67
L +LEK+S++ K S G + +EN+ D+ +PL K
Sbjct: 773 LAKLEKVSVITYKPLKSVSDVGEFCQTYADLENL----------DL---SPLIARLKKQL 819
Query: 68 PNTAKEILSQNKHSQDHYFVVPKII 92
KE L N H+++ PK +
Sbjct: 820 EKLEKEKLKLNLHNENFVKNAPKSV 844
Score = 20.0 bits (40), Expect = 8.9
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 62 DEPKSQPNTAKEILSQNKHSQDHYF 86
D P S P E L Q+K D +F
Sbjct: 430 DTPLSCPTCKSEKLEQDKDVLDTWF 454
>ref|NP_222835.1| TRANSLATION INITIATION FACTOR IF-3 [Helicobacter pylori J99]
Length = 203
Score = 21.6 bits (44), Expect = 3.0
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 52 DIELCTPLREDEPKSQPNTAKEILSQNKH 80
+I+L T + +++ + A+E + NKH
Sbjct: 88 EIKLSTQIAQNDINYKVKHAREFIESNKH 116
>ref|NP_224088.1| putative [Helicobacter pylori J99]
Length = 218
Score = 21.2 bits (43), Expect = 4.0
Identities = 8/14 (57%), Positives = 13/14 (92%)
Query: 41 IFALETSALKTDIE 54
+FAL+ +ALKT+I+
Sbjct: 14 LFALDLNALKTEIK 27
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 21.2 bits (43), Expect = 4.0
Identities = 9/22 (40%), Positives = 14/22 (62%)
Query: 58 PLREDEPKSQPNTAKEILSQNK 79
PL+E+ S+ T K++ QNK
Sbjct: 2116 PLKENASMSEELTHKKLKEQNK 2137
>ref|NP_222887.1| sialic acid synthase [Helicobacter pylori J99]
Length = 340
Score = 21.2 bits (43), Expect = 4.0
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 8/38 (21%)
Query: 36 GFVENIFALETSALKTDIELCTPLREDEPKSQPNTAKE 73
GF + A++ S L L E+EPK P T +E
Sbjct: 245 GFKSMVGAIKQSVLA--------LGEEEPKINPKTLEE 274
>ref|NP_223257.1| SUBUNIT OF 2-OXOGLUTARATE OXIDOREDUCTASE [Helicobacter pylori J99]
Length = 184
Score = 20.8 bits (42), Expect = 5.2
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 52 DIELCTPLREDEPKSQ 67
D L TP +EDE K Q
Sbjct: 96 DPNLVTPTKEDEEKYQ 111
>ref|NP_223849.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 329
Score = 20.4 bits (41), Expect = 6.8
Identities = 7/19 (36%), Positives = 13/19 (67%)
Query: 75 LSQNKHSQDHYFVVPKIIE 93
LSQN + +YF++ ++E
Sbjct: 129 LSQNIDNHSYYFLLASLLE 147
>ref|NP_223427.1| putative PROBABLE N-ACETYLMURAMOYL-L-ALANINE AMIDASE [Helicobacter
pylori J99]
Length = 469
Score = 20.4 bits (41), Expect = 6.8
Identities = 7/24 (29%), Positives = 15/24 (62%)
Query: 58 PLREDEPKSQPNTAKEILSQNKHS 81
P++++ K++ T K S++ HS
Sbjct: 146 PIKKEAKKAKEKTTKHAHSKHAHS 169
>ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helicobacter pylori J99]
Length = 949
Score = 20.4 bits (41), Expect = 6.8
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 4 DDALLQRLEKLSMLEIKDEHKESVKGH 30
D ++ E LS+ KD+ KE KG+
Sbjct: 893 DGVVVHTGEILSLKRFKDDVKEVSKGY 919
>ref|NP_224115.1| putative [Helicobacter pylori J99]
Length = 238
Score = 20.0 bits (40), Expect = 8.9
Identities = 8/27 (29%), Positives = 16/27 (58%)
Query: 50 KTDIELCTPLREDEPKSQPNTAKEILS 76
K+ +++ PL K+Q + KE+L+
Sbjct: 197 KSALKVLPPLITHNSKNQSDNTKEVLN 223
>ref|NP_224015.1| putative TYPE III RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 779
Score = 20.0 bits (40), Expect = 8.9
Identities = 9/24 (37%), Positives = 12/24 (49%)
Query: 17 LEIKDEHKESVKGHLAEVLGFVEN 40
+E+K EH E E L +EN
Sbjct: 714 MEVKGEHLEPSNAWKKEFLEMLEN 737
>ref|NP_223518.1| TRANSCRIPTION ELONGATION FACTOR (TRANSCRIPT CLEAVAGE FACTOR)
[Helicobacter pylori J99]
Length = 164
Score = 20.0 bits (40), Expect = 8.9
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 54 ELCTPLREDEPKSQPNTAKEI 74
++C L++ + +PN KEI
Sbjct: 13 KICAELKQLKEVERPNIVKEI 33
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.314 0.132 0.357
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,864
Number of Sequences: 1491
Number of extensions: 3668
Number of successful extensions: 21
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of query: 93
length of database: 494,079
effective HSP length: 69
effective length of query: 24
effective length of database: 391,200
effective search space: 9388800
effective search space used: 9388800
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.0 bits)
S2: 40 (20.0 bits)