BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645595|ref|NP_207771.1| conserved hypothetical
secreted protein [Helicobacter pylori 26695]
(100 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222963.1| putative [Helicobacter pylori J99] 189 2e-50
ref|NP_222769.1| sodium/proline symporter [Helicobacter pyl... 25 0.32
ref|NP_222746.1| putative [Helicobacter pylori J99] 25 0.32
ref|NP_223089.1| putative [Helicobacter pylori J99] 25 0.42
ref|NP_223018.1| putative [Helicobacter pylori J99] 24 0.94
ref|NP_222797.1| methyl-accepting chemotaxis protein (MCP) ... 23 2.1
ref|NP_223808.1| putative THIOREDOXIN REDUCTASE [Helicobact... 22 3.6
ref|NP_223392.1| PHOSPHATIDYLGLYCEROPHOSPHATASE A [Helicoba... 22 4.7
ref|NP_223144.1| Molybdate ABC transporter, permease [Helic... 22 4.7
ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [He... 22 4.7
ref|NP_222837.1| 50S RIBOSOMAL PROTEIN L20 [Helicobacter py... 21 6.1
ref|NP_223826.1| putative NA+/H+ ANTIPORTER [Helicobacter p... 21 7.9
ref|NP_223416.1| putative [Helicobacter pylori J99] 21 7.9
ref|NP_222869.1| putative [Helicobacter pylori J99] 21 7.9
>ref|NP_222963.1| putative [Helicobacter pylori J99]
Length = 351
Score = 189 bits (479), Expect = 2e-50
Identities = 93/100 (93%), Positives = 95/100 (95%)
Query: 1 MMFTVAVLMLAFLIFVHELGHFTIARICGVKVEVFSIGFGKKLCFFKLFGTQFALSLIPL 60
MMF VAVLMLAFLIFVHELGHF IARICGVKVEVFSIGFGKKL FFKLFGTQFALSLIPL
Sbjct: 1 MMFIVAVLMLAFLIFVHELGHFIIARICGVKVEVFSIGFGKKLWFFKLFGTQFALSLIPL 60
Query: 61 GGYVKLKGMDKEENEENKTHQANDSYVQKNPFQKLWILFG 100
GGYVKLKGMDKEENEENK +QANDSY QK+PFQKLWILFG
Sbjct: 61 GGYVKLKGMDKEENEENKINQANDSYAQKSPFQKLWILFG 100
>ref|NP_222769.1| sodium/proline symporter [Helicobacter pylori J99]
Length = 496
Score = 25.4 bits (54), Expect = 0.32
Identities = 16/56 (28%), Positives = 27/56 (47%), Gaps = 2/56 (3%)
Query: 8 LMLAFLIFVHELGHFTIARICGVKVEVFSIGFGKKLCFFKLFGTQFALSLIPLGGY 63
L+ AF+I + + + + + G K+ F FG + + GT +S LGGY
Sbjct: 130 LISAFVILIFFIFYISSGLVSGAKL--FEATFGIQYTYALSIGTLIIVSYTFLGGY 183
>ref|NP_222746.1| putative [Helicobacter pylori J99]
Length = 175
Score = 25.4 bits (54), Expect = 0.32
Identities = 11/34 (32%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 1 MMFTVAVLMLAFLIFV-HELGHFTIARICGVKVE 33
++F + + LAF++ V + + H+++A I GV+V+
Sbjct: 9 VLFILTAIFLAFMLLVSYCMPHYSVAVISGVEVK 42
>ref|NP_223089.1| putative [Helicobacter pylori J99]
Length = 313
Score = 25.0 bits (53), Expect = 0.42
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 32 VEVFSIGFGKKLCFFKLFGTQFALSLIPLGGYVK 65
V + S+ FG + F FGT+F L+ GG +K
Sbjct: 131 VSMISVKFGYQKYFVPYFGTRFYGDLLLGGGALK 164
>ref|NP_223018.1| putative [Helicobacter pylori J99]
Length = 381
Score = 23.9 bits (50), Expect = 0.94
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 6 AVLMLAFLIFVHELGHFTIARICGV 30
A+ F IF+ +LG+ I ICGV
Sbjct: 337 ALFSYLFTIFLGDLGYVLIFVICGV 361
>ref|NP_222797.1| methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
Length = 673
Score = 22.7 bits (47), Expect = 2.1
Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 14/92 (15%)
Query: 5 VAVLMLAFLIFVHELGHFT--IARICGVKVEVFSIGFGKKLCFFKLFGTQFALSLIPLGG 62
+ VL+LAFL+F+ T I+R+ + F++ K A+SL P
Sbjct: 308 LGVLVLAFLVFIIISNLITKRISRVNNTLNDFFNLLNNPK--------NNHAISLTPPSA 359
Query: 63 YVKLKGMDKEENEE----NKTHQANDSYVQKN 90
Y ++ M NE ++ QA++ +Q +
Sbjct: 360 YDEIGQMQASINENILKTQESIQADNKAIQNS 391
>ref|NP_223808.1| putative THIOREDOXIN REDUCTASE [Helicobacter pylori J99]
Length = 324
Score = 21.9 bits (45), Expect = 3.6
Identities = 13/45 (28%), Positives = 19/45 (41%), Gaps = 5/45 (11%)
Query: 47 KLFGTQFALSLIPLGGYVKLKGMDKEENEEN-----KTHQANDSY 86
K + ++ L G++ K KEE EN K H+ SY
Sbjct: 53 KRIDKDYKKQVVELKGHIPFKDSFKEETLENFTNLLKEHRITPSY 97
>ref|NP_223392.1| PHOSPHATIDYLGLYCEROPHOSPHATASE A [Helicobacter pylori J99]
Length = 158
Score = 21.6 bits (44), Expect = 4.7
Identities = 21/86 (24%), Positives = 33/86 (37%), Gaps = 30/86 (34%)
Query: 39 FGKKLCFFKLF---------GTQFALSLIPLG------------------GYVKLKGMDK 71
FG + CF LF GT +L + LG G + + +DK
Sbjct: 4 FGWRACFLTLFFSGYSKKAPGTIGSLVALLLGLPILIFSANTLFLGAIFVGLIAITQIDK 63
Query: 72 EENEENKTHQANDSYVQKNPFQKLWI 97
EE E T + + SY+ + +W+
Sbjct: 64 EEEE---TKRHDSSYIVIDELVGMWL 86
>ref|NP_223144.1| Molybdate ABC transporter, permease [Helicobacter pylori J99]
Length = 224
Score = 21.6 bits (44), Expect = 4.7
Identities = 8/24 (33%), Positives = 13/24 (53%)
Query: 6 AVLMLAFLIFVHELGHFTIARICG 29
+VLM F+H +G F + + G
Sbjct: 146 SVLMAIITTFMHTIGEFGVVMMLG 169
>ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [Helicobacter pylori J99]
Length = 681
Score = 21.6 bits (44), Expect = 4.7
Identities = 7/19 (36%), Positives = 14/19 (72%)
Query: 71 KEENEENKTHQANDSYVQK 89
KE N+ENK ++A + +++
Sbjct: 29 KESNKENKNNKAKEGKIKE 47
>ref|NP_222837.1| 50S RIBOSOMAL PROTEIN L20 [Helicobacter pylori J99]
Length = 116
Score = 21.2 bits (43), Expect = 6.1
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 71 KEENEENKTHQANDSYVQKNPFQKLWIL 98
KE+ E + + D +K F+ LW++
Sbjct: 35 KEQLERSMYYAFRDRKQKKREFRSLWVV 62
>ref|NP_223826.1| putative NA+/H+ ANTIPORTER [Helicobacter pylori J99]
Length = 383
Score = 20.8 bits (42), Expect = 7.9
Identities = 6/18 (33%), Positives = 13/18 (71%)
Query: 18 ELGHFTIARICGVKVEVF 35
E+G + +CG++VE++
Sbjct: 57 EIGFLFLMFLCGLEVEIY 74
>ref|NP_223416.1| putative [Helicobacter pylori J99]
Length = 200
Score = 20.8 bits (42), Expect = 7.9
Identities = 12/37 (32%), Positives = 20/37 (53%)
Query: 42 KLCFFKLFGTQFALSLIPLGGYVKLKGMDKEENEENK 78
KL F+KL Q L PLG + ++ + + ++NK
Sbjct: 4 KLLFWKLKDYQNILLYSPLGHELDIRPLILKLRQKNK 40
>ref|NP_222869.1| putative [Helicobacter pylori J99]
Length = 305
Score = 20.8 bits (42), Expect = 7.9
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 62 GYVKLKGMDKEENEE 76
GY+ GMD ++NEE
Sbjct: 211 GYLYEAGMDVKQNEE 225
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.330 0.146 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,809
Number of Sequences: 1491
Number of extensions: 4613
Number of successful extensions: 20
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 14
length of query: 100
length of database: 494,079
effective HSP length: 64
effective length of query: 36
effective length of database: 398,655
effective search space: 14351580
effective search space used: 14351580
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 42 (20.8 bits)