BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645596|ref|NP_207772.1| exonuclease VII-like
protein (xseA) [Helicobacter pylori 26695]
(121 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222964.1| EXODEOXYRIBONUCLEASE LARGE SUBUNIT [Helico... 146 1e-37
ref|NP_223804.1| putative [Helicobacter pylori J99] 27 0.21
ref|NP_224179.1| Ubiquinol cytochrome c oxidoreductase, cyt... 25 0.62
ref|NP_223402.1| putative [Helicobacter pylori J99] 24 1.1
ref|NP_224162.1| ELONGATION FACTOR TS (EF-TS) [Helicobacter... 23 2.4
ref|NP_223248.1| putative [Helicobacter pylori J99] 23 2.4
ref|NP_223388.1| putative [Helicobacter pylori J99] 22 4.0
ref|NP_224099.1| putative [Helicobacter pylori J99] 22 5.3
ref|NP_223328.1| OXYGEN-INDEPENDENT COPROPORPHYRINOGEN III ... 22 5.3
ref|NP_223067.1| HIGH-AFFINITY NICKEL-TRANSPORT PROTEIN [He... 22 6.9
ref|NP_222892.1| SERINE HYDROXYMETHYLTRANSFERASE [Helicobac... 22 6.9
ref|NP_222795.1| putative Outer membrane protein [Helicobac... 22 6.9
ref|NP_224152.1| DNA REPAIR PROTEIN(RECOMBINATION PROTEIN N... 21 9.0
ref|NP_223171.1| DNA GYRASE SUBUNIT B [Helicobacter pylori ... 21 9.0
ref|NP_222734.1| putative [Helicobacter pylori J99] 21 9.0
>ref|NP_222964.1| EXODEOXYRIBONUCLEASE LARGE SUBUNIT [Helicobacter pylori J99]
Length = 420
Score = 146 bits (369), Expect = 1e-37
Identities = 72/87 (82%), Positives = 79/87 (90%)
Query: 25 YLARTFSMSAIGHESDFLLSDLVADLRASTPSNAMEILLPNSDEWLQKLDGFNVKLHRSF 84
YLA+TFSMSAIGHESDFLLSD VADLRASTPSNAMEILLP+SDEWLQ+LDGFNVKLHRSF
Sbjct: 225 YLAKTFSMSAIGHESDFLLSDSVADLRASTPSNAMEILLPSSDEWLQRLDGFNVKLHRSF 284
Query: 85 KILLHQKKAHLEHLADFLEKRNYPVNH 111
K LLHQKKAHLEHLA L++ ++ H
Sbjct: 285 KTLLHQKKAHLEHLAASLKRLSFENKH 311
>ref|NP_223804.1| putative [Helicobacter pylori J99]
Length = 141
Score = 26.6 bits (57), Expect = 0.21
Identities = 16/37 (43%), Positives = 27/37 (72%), Gaps = 3/37 (8%)
Query: 38 ESDFLLSDLVADLRASTPSNAMEILLPNSDEWLQKLD 74
ESDFLL + +AD+ AST +E++L SDE +++++
Sbjct: 11 ESDFLLLEKIADVLAST--QIIELVLV-SDETMREIN 44
>ref|NP_224179.1| Ubiquinol cytochrome c oxidoreductase, cytochrome c1 subunit
[Helicobacter pylori J99]
Length = 285
Score = 25.0 bits (53), Expect = 0.62
Identities = 16/42 (38%), Positives = 21/42 (49%)
Query: 16 KTLFKSYGYYLARTFSMSAIGHESDFLLSDLVADLRASTPSN 57
KT S+ + R + M A SD LSD+VA L + P N
Sbjct: 116 KTAKLSHKFNDERPYPMPAFSQFSDQDLSDIVAYLTSILPKN 157
>ref|NP_223402.1| putative [Helicobacter pylori J99]
Length = 400
Score = 24.3 bits (51), Expect = 1.1
Identities = 23/104 (22%), Positives = 39/104 (37%), Gaps = 14/104 (13%)
Query: 7 IKQMIATCKKTLFKSYGYYLARTFSMSAIGHESDFLL-SDLVADLRASTPSNAMEILLPN 65
+K +C FK+ F + I DFL+ S+ L+ A+ I
Sbjct: 31 LKHPTKSCVHASFKN------DVFLLQKIRRAGDFLIKSEKATPLKREILKQALRI---- 80
Query: 66 SDEWLQKLDGFNVKLHRSFKILLHQKKAHLEHLADFLEKRNYPV 109
+ Q + + L + K +K LE DF++K P+
Sbjct: 81 ---YSQSFEVISHNLQENSKHASQKKALDLETFEDFIQKNQAPI 121
>ref|NP_224162.1| ELONGATION FACTOR TS (EF-TS) [Helicobacter pylori J99]
Length = 355
Score = 23.1 bits (48), Expect = 2.4
Identities = 10/31 (32%), Positives = 18/31 (57%)
Query: 70 LQKLDGFNVKLHRSFKILLHQKKAHLEHLAD 100
L+ + F ++ S ++L HQKKA + L +
Sbjct: 235 LKNIPTFGSRIELSDEVLAHQKKAFEDELKE 265
>ref|NP_223248.1| putative [Helicobacter pylori J99]
Length = 293
Score = 23.1 bits (48), Expect = 2.4
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 18 LFKSYGYYLARTFSMSAIGHESDFLLSDLVADLRASTPSNAMEILLP 64
LF G++LA S+ ++ D RA +PSNA+E+ P
Sbjct: 139 LFLPKGFHLAPPPSLKEKSQHANLASQD--EKERAKSPSNALELKPP 183
>ref|NP_223388.1| putative [Helicobacter pylori J99]
Length = 192
Score = 22.3 bits (46), Expect = 4.0
Identities = 16/67 (23%), Positives = 30/67 (43%), Gaps = 2/67 (2%)
Query: 43 LSDLVADLRASTPSNAMEILLPNSDEWLQKLDGFNVKLHRSFKILLHQKKAHLEHLADFL 102
+ D+ D+ S ++ + N+D +KL FN + F+ L + LE L +
Sbjct: 5 MKDIYLDVEKSIKD--LQSIFKNADGRDEKLKRFNQEALEVFQKLERESLKELESLKNNE 62
Query: 103 EKRNYPV 109
E N+ +
Sbjct: 63 EWENFTI 69
>ref|NP_224099.1| putative [Helicobacter pylori J99]
Length = 329
Score = 21.9 bits (45), Expect = 5.3
Identities = 13/29 (44%), Positives = 16/29 (54%), Gaps = 2/29 (6%)
Query: 87 LLHQKKAHLEHLADFLEKRNYPVNHSEPG 115
L ++ KA E L FLE R Y V+ PG
Sbjct: 29 LAYRPKA--EVLQGFLEAREYSVSSKVPG 55
>ref|NP_223328.1| OXYGEN-INDEPENDENT COPROPORPHYRINOGEN III OXIDASE [Helicobacter
pylori J99]
Length = 457
Score = 21.9 bits (45), Expect = 5.3
Identities = 24/84 (28%), Positives = 31/84 (36%), Gaps = 17/84 (20%)
Query: 40 DFLLSDLVADLRASTPSNAMEILLPNSDEWLQKLDG-----FNV-----------KLHRS 83
D+ + + DL P+ E L EW+ KLD FN K+ +
Sbjct: 202 DYGIKSINFDLIYGLPNQTKEGFLKTL-EWVLKLDPDRLAVFNYAHVPWVKKTMRKIDET 260
Query: 84 FKILLHQKKAHLEHLADFLEKRNY 107
K LE L FLEK NY
Sbjct: 261 LLPSPRDKLEILESLISFLEKANY 284
>ref|NP_223067.1| HIGH-AFFINITY NICKEL-TRANSPORT PROTEIN [Helicobacter pylori J99]
Length = 331
Score = 21.6 bits (44), Expect = 6.9
Identities = 8/28 (28%), Positives = 16/28 (56%)
Query: 9 QMIATCKKTLFKSYGYYLARTFSMSAIG 36
++++T + F GYYL F ++ +G
Sbjct: 290 RLLSTLQSLEFTDLGYYLVGLFVIAFLG 317
>ref|NP_222892.1| SERINE HYDROXYMETHYLTRANSFERASE [Helicobacter pylori J99]
Length = 416
Score = 21.6 bits (44), Expect = 6.9
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 72 KLDGFNVKLHRSFKILLHQKKAHLEHLADFLEKRNY 107
K GF L FK K++++ LA L+++N+
Sbjct: 267 KAVGFKENLKPEFKAYAKLVKSNMQVLAKTLKEKNH 302
>ref|NP_222795.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 255
Score = 21.6 bits (44), Expect = 6.9
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 8 KQMIATCKKTLFKSYGYYLARTFSMSAIG 36
K K+ F++YGYY ++S +G
Sbjct: 88 KWFFGKTKRFGFRTYGYYSYNHANLSFVG 116
>ref|NP_224152.1| DNA REPAIR PROTEIN(RECOMBINATION PROTEIN N) [Helicobacter pylori
J99]
Length = 522
Score = 21.2 bits (43), Expect = 9.0
Identities = 7/19 (36%), Positives = 14/19 (72%)
Query: 29 TFSMSAIGHESDFLLSDLV 47
T ++ ++GH ++FL S L+
Sbjct: 242 THALESVGHSAEFLKSALL 260
>ref|NP_223171.1| DNA GYRASE SUBUNIT B [Helicobacter pylori J99]
Length = 773
Score = 21.2 bits (43), Expect = 9.0
Identities = 8/15 (53%), Positives = 12/15 (79%)
Query: 70 LQKLDGFNVKLHRSF 84
L+KL+G N ++ RSF
Sbjct: 620 LEKLEGLNYQILRSF 634
>ref|NP_222734.1| putative [Helicobacter pylori J99]
Length = 275
Score = 21.2 bits (43), Expect = 9.0
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 87 LLHQKKAH-LEHLADFLEKRNYP 108
L HQ+ LE L FLE+ N+P
Sbjct: 186 LNHQQDGDSLEALRPFLERHNFP 208
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.320 0.134 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 127,035
Number of Sequences: 1491
Number of extensions: 4942
Number of successful extensions: 25
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 15
length of query: 121
length of database: 494,079
effective HSP length: 67
effective length of query: 54
effective length of database: 394,182
effective search space: 21285828
effective search space used: 21285828
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 43 (21.2 bits)