BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645597|ref|NP_207773.1| hypothetical protein
[Helicobacter pylori 26695]
(231 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223574.1| putative vacuolating cytotoxin (VacA) para... 28 0.21
ref|NP_223102.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobact... 28 0.27
ref|NP_223472.1| putative osmoprotection binding protein [H... 27 0.46
ref|NP_224097.1| putative [Helicobacter pylori J99] 25 1.7
ref|NP_223824.1| putative transporter [Helicobacter pylori ... 25 1.7
ref|NP_223141.1| GLUTATHIONE-REGULATED POTASSIUM-EFFLUX SYS... 25 1.7
ref|NP_224081.1| DNA POLYMERASE I [Helicobacter pylori J99] 25 2.3
ref|NP_223413.1| putative [Helicobacter pylori J99] 24 3.0
ref|NP_223104.1| putative [Helicobacter pylori J99] 24 3.0
ref|NP_222995.1| putative vacuolating cytotoxin (VacA) para... 24 3.0
ref|NP_223624.1| GLYCYL-TRNA SYNTHETASE BETA CHAIN [Helicob... 23 5.1
ref|NP_223912.1| NADH oxidoreductase I [Helicobacter pylori... 23 6.6
ref|NP_223826.1| putative NA+/H+ ANTIPORTER [Helicobacter p... 23 6.6
ref|NP_223505.1| putative [Helicobacter pylori J99] 23 6.6
ref|NP_223572.1| putative [Helicobacter pylori J99] 23 8.7
ref|NP_223509.1| phosphoheptose isomerase [Helicobacter pyl... 23 8.7
ref|NP_223475.1| putative osmoprotection binding protein [H... 23 8.7
ref|NP_223428.1| putative [Helicobacter pylori J99] 23 8.7
>ref|NP_223574.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2399
Score = 28.1 bits (61), Expect = 0.21
Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
Query: 2 LPQNSGTLKLSLSLLYSKAYKIIKKSAEMNVLIRLCFIFLIGFF-GANKTLNATAILSLD 60
L NS + S+L + A +N+ F FF G +LNA + L+
Sbjct: 901 LDNNSNLSLDNQSVLNANGTSAFNNQASLNIYNGSQAAFSSLFFNGGTLSLNANSKLNAS 960
Query: 61 FGSFSMPITANFSDGALN 78
SFS T N D LN
Sbjct: 961 SASFSNNTTINLDDSVLN 978
>ref|NP_223102.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 733
Score = 27.7 bits (60), Expect = 0.27
Identities = 12/43 (27%), Positives = 26/43 (59%)
Query: 106 LVFIVIVVAIIALIAIFIRSILLNTIFVGSLIGSLWLYMVGFY 148
L +V V+AI+A+I + + +L+ + S+ S+ + ++G Y
Sbjct: 26 LALVVFVIAILAIIIVPLPPFVLDFLLTISIALSVLIILIGLY 68
>ref|NP_223472.1| putative osmoprotection binding protein [Helicobacter pylori J99]
Length = 161
Score = 26.9 bits (58), Expect = 0.46
Identities = 25/97 (25%), Positives = 45/97 (45%), Gaps = 18/97 (18%)
Query: 111 IVVAIIALIAIFIRSILLNTIFVGSLIGSLWLYMVGFYYFYGVPFLSYLS------GCYE 164
I+VA+ +LI + ++ +F S + L +V F Y +P L+ + G Y+
Sbjct: 62 IIVALSSLIVLVFGVLIGVFVFYNSKARAFLLPVVNF--LYTIPSLALFALFIPVIGVYK 119
Query: 165 SFSFSACYPH----------SLQLLPTLMQYSPIYSI 191
S+ FS + + SL L ++Q S I+S+
Sbjct: 120 SYYFSYFFKYSMTFSKNFGLSLNLPSPVLQLSQIHSL 156
>ref|NP_224097.1| putative [Helicobacter pylori J99]
Length = 376
Score = 25.0 bits (53), Expect = 1.7
Identities = 11/43 (25%), Positives = 23/43 (52%)
Query: 182 LMQYSPIYSIIKLLAHFNIEITSKIIISLVWVCIGLYFLLLQA 224
L++ IY I+ + +HF I ++ +++ + YFL+ A
Sbjct: 88 LLKEEKIYGILHIPSHFEANIYKQVPVTIDFYANANYFLIYGA 130
>ref|NP_223824.1| putative transporter [Helicobacter pylori J99]
Length = 443
Score = 25.0 bits (53), Expect = 1.7
Identities = 11/42 (26%), Positives = 24/42 (56%), Gaps = 3/42 (7%)
Query: 110 VIVVAIIALIAIFIRSILLNTIFVGSLIGSLWLYMVGFYYFY 151
V++ ++ I ++ L ++ F+G LWL++VG +F+
Sbjct: 267 VMLSGVLLFIVSYLCLFLADSSFLGKY---LWLFIVGVAFFF 305
>ref|NP_223141.1| GLUTATHIONE-REGULATED POTASSIUM-EFFLUX SYSTEM PROTEIN [Helicobacter
pylori J99]
Length = 416
Score = 25.0 bits (53), Expect = 1.7
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Query: 41 LIGFFGANKTLNATAILSLDFGSFSMPITANFSDGALNVFKWFEKHPSVGV----KVGRL 96
L+ FF KT TA+ G FS I N G+ +F EK +G + +
Sbjct: 312 LLRFFRDAKTAIKTALSLAQIGEFSFVIFLN--SGSHQLFNLQEKKGILGFLHQKNILNI 369
Query: 97 ANQDDTIFTLVFIVIVVAIIA 117
A D I L+ +++V +++A
Sbjct: 370 AQND--IHQLLILMVVFSMLA 388
>ref|NP_224081.1| DNA POLYMERASE I [Helicobacter pylori J99]
Length = 897
Score = 24.6 bits (52), Expect = 2.3
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 29 EMNVLIRLCFIFLIGFFGANKTLNATAILS-LDFGSFSMPITANFSDGALNVFKWFEKHP 87
E+NVL R ++ G + LN+ L + + +P + S N+ K +KHP
Sbjct: 539 ELNVLERQ----ILDLIGVDFNLNSPKQLGEVLYDKLGLPKNKSHSTDEKNLLKILDKHP 594
Query: 88 SV 89
S+
Sbjct: 595 SI 596
>ref|NP_223413.1| putative [Helicobacter pylori J99]
Length = 437
Score = 24.3 bits (51), Expect = 3.0
Identities = 12/62 (19%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 100 DDTIFTLVFIVIVVAIIALIAIFIRSI--------LLNTIFVGSLIGSLWLYMVGFYYFY 151
DD++ + FI V+ + + ++ + + +I G L+G+ + +VG +
Sbjct: 284 DDSVKMMAFIAFVMLVASGFGEVLQKVHAIDGLVNAITSIIQGKLLGAFLMLVVGLFITM 343
Query: 152 GV 153
G+
Sbjct: 344 GI 345
>ref|NP_223104.1| putative [Helicobacter pylori J99]
Length = 429
Score = 24.3 bits (51), Expect = 3.0
Identities = 15/59 (25%), Positives = 29/59 (48%), Gaps = 8/59 (13%)
Query: 108 FIVIVVAIIALIAIFIRSILLNTIFVGSLIGSLWLYMVGFYYFYGV---PFLSYLSGCY 163
F++ + ++ ++ IF I N SLI L + FY +G+ PF +++G +
Sbjct: 353 FLIWLFFLLVIVKIFWSGIKQN-----SLISFFILITLAFYLIFGIGFDPFDFFITGSF 406
>ref|NP_222995.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2902
Score = 24.3 bits (51), Expect = 3.0
Identities = 12/31 (38%), Positives = 18/31 (57%)
Query: 43 GFFGANKTLNATAILSLDFGSFSMPITANFS 73
G F NK NAT + + GSF+ T++F+
Sbjct: 297 GAFTFNKKFNATNNTAFNSGSFTFKGTSSFN 327
>ref|NP_223624.1| GLYCYL-TRNA SYNTHETASE BETA CHAIN [Helicobacter pylori J99]
Length = 701
Score = 23.5 bits (49), Expect = 5.1
Identities = 7/30 (23%), Positives = 19/30 (63%)
Query: 189 YSIIKLLAHFNIEITSKIIISLVWVCIGLY 218
+ ++K++AH+ +E K + ++ +G+Y
Sbjct: 502 FGLLKIIAHYGLEFDLKADLKNLFEKVGVY 531
>ref|NP_223912.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 492
Score = 23.1 bits (48), Expect = 6.6
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 206 IIISLVWVCIGLYFLLLQAFFS 227
I+ LV VC G++ LL+ AF S
Sbjct: 18 ILPMLVLVCGGIFTLLINAFTS 39
>ref|NP_223826.1| putative NA+/H+ ANTIPORTER [Helicobacter pylori J99]
Length = 383
Score = 23.1 bits (48), Expect = 6.6
Identities = 15/53 (28%), Positives = 28/53 (52%)
Query: 104 FTLVFIVIVVAIIALIAIFIRSILLNTIFVGSLIGSLWLYMVGFYYFYGVPFL 156
F+LV IV+ + I ++ F+ ++++T F L VGF +F + F+
Sbjct: 224 FSLVAIVVWLKIEMVLGAFLAGLVVSTFFPHKSELIHKLNDVGFGFFVPLFFI 276
>ref|NP_223505.1| putative [Helicobacter pylori J99]
Length = 228
Score = 23.1 bits (48), Expect = 6.6
Identities = 15/70 (21%), Positives = 26/70 (36%), Gaps = 15/70 (21%)
Query: 163 YESFSFSACYPHSLQLLPT-----------LMQYSPIYSIIKLLAHFNIEITSKIIISLV 211
Y S + CY ++ + T LM Y +Y L H+ ++ ++ +
Sbjct: 153 YGSLALLLCYSNANNRIKTIGAIILLFWIFLMAYDRVY----LGVHYPSDVLGGFLLGIA 208
Query: 212 WVCIGLYFLL 221
W C L L
Sbjct: 209 WSCCSLALYL 218
>ref|NP_223572.1| putative [Helicobacter pylori J99]
Length = 230
Score = 22.7 bits (47), Expect = 8.7
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 96 LANQDDTIFTLVFIVIVVAIIALIAIFIRSILLNTIFVGS 135
LAN +F +IVV + +LI +F+ S + + G+
Sbjct: 140 LANMGKMLF---IALIVVVVCSLINLFLGSPMFQVVIAGA 176
>ref|NP_223509.1| phosphoheptose isomerase [Helicobacter pylori J99]
Length = 192
Score = 22.7 bits (47), Expect = 8.7
Identities = 11/28 (39%), Positives = 16/28 (56%)
Query: 73 SDGALNVFKWFEKHPSVGVKVGRLANQD 100
S + NV K +EK +G+K LA +D
Sbjct: 120 SGNSKNVLKAYEKAKDLGMKTLSLAGRD 147
>ref|NP_223475.1| putative osmoprotection binding protein [Helicobacter pylori J99]
Length = 553
Score = 22.7 bits (47), Expect = 8.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 188 IYSIIKLLAHFNIEITSKIIISLVWVCIGLY 218
IY I L HF I S +I+ + V IG++
Sbjct: 51 IYFIDLLAQHFIIVALSSLIVLVFGVLIGVF 81
>ref|NP_223428.1| putative [Helicobacter pylori J99]
Length = 363
Score = 22.7 bits (47), Expect = 8.7
Identities = 11/41 (26%), Positives = 22/41 (52%), Gaps = 3/41 (7%)
Query: 159 LSGCYESFSFSACYPHSLQ---LLPTLMQYSPIYSIIKLLA 196
LSG ++ F + C+ Q L+P +++ S + I ++A
Sbjct: 178 LSGGHQGFKYEDCFKEEFQLENLVPKVVEASKEWGNIPIIA 218
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.331 0.145 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 225,869
Number of Sequences: 1491
Number of extensions: 9633
Number of successful extensions: 63
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 51
Number of HSP's gapped (non-prelim): 22
length of query: 231
length of database: 494,079
effective HSP length: 75
effective length of query: 156
effective length of database: 382,254
effective search space: 59631624
effective search space used: 59631624
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 47 (22.7 bits)