BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645599|ref|NP_207775.1| hypothetical protein
[Helicobacter pylori 26695]
         (35 letters)

Database: NC_000921.faa
           1491 sequences; 494,079 total letters

Searching...done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_223770.1|  putative [Helicobacter pylori J99]               22  3.7
ref|NP_223720.1|  putative CYTOCHROME C-TYPE BIOGENESIS PROT...    22  3.7
ref|NP_224127.1|  putative TYPE II DNA MODIFICATION ENZYME (...    20  8.3
ref|NP_223519.1|  LIPID-A-DISACCHARIDE SYNTHASE [Helicobacte...    20  8.3

>ref|NP_223770.1| putative [Helicobacter pylori J99]
          Length = 331

 Score = 21.6 bits (44), Expect = 3.7
 Identities = 8/25 (32%), Positives = 15/25 (60%)

Query: 2   EKYNDKMKEVLNDELTYYLNKTIKE 26
           +K   K KE+  + L+++ NK+  E
Sbjct: 200 DKDLSKQKEIFQEALSFFRNKSYAE 224



>ref|NP_223720.1| putative CYTOCHROME C-TYPE BIOGENESIS PROTEIN [Helicobacter pylori
           J99]
          Length = 936

 Score = 21.6 bits (44), Expect = 3.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 5   NDKMKEVLNDELTYYLNKTIK 25
           ND+ K  L   LT+Y +K +K
Sbjct: 131 NDEKKLSLKTPLTFYYSKRLK 151



>ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
           [Helicobacter pylori J99]
          Length = 1252

 Score = 20.4 bits (41), Expect = 8.3
 Identities = 6/12 (50%), Positives = 9/12 (75%)

Query: 24  IKEWVYNINYGL 35
           +K+W   INYG+
Sbjct: 983 LKDWDIQINYGI 994



>ref|NP_223519.1| LIPID-A-DISACCHARIDE SYNTHASE [Helicobacter pylori J99]
          Length = 360

 Score = 20.4 bits (41), Expect = 8.3
 Identities = 9/22 (40%), Positives = 13/22 (58%)

Query: 1   MEKYNDKMKEVLNDELTYYLNK 22
           +EKY D +  +L  E+ YY  K
Sbjct: 122 LEKYCDFLGAILPFEVGYYQKK 143



  Database: NC_000921.faa
    Posted date:  Dec 10, 2001  4:36 PM
  Number of letters in database: 494,079
  Number of sequences in database:  1491
  
Lambda     K      H
   0.313    0.135    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,383
Number of Sequences: 1491
Number of extensions: 1269
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 35
length of database: 494,079
effective HSP length: 11
effective length of query: 24
effective length of database: 477,678
effective search space: 11464272
effective search space used: 11464272
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 41 (20.4 bits)