BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645600|ref|NP_207776.1| hypothetical protein
[Helicobacter pylori 26695]
(107 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223912.1| NADH oxidoreductase I [Helicobacter pylori... 23 1.4
ref|NP_223355.1| 3-OXOACID COA-TRANSFERASE, SUBUNIT A [Heli... 22 3.2
ref|NP_223814.1| AMINO ACID ABC TRANSPORTER, PERMEASE PROTE... 22 4.1
ref|NP_222956.1| ABC transporter, ATP-binding protein [Heli... 22 4.1
ref|NP_222830.1| putative [Helicobacter pylori J99] 21 7.1
ref|NP_224178.1| Ubiquinol cytochrome c oxidoreductase, cyt... 21 9.2
ref|NP_223757.1| putative Outer membrane protein [Helicobac... 21 9.2
>ref|NP_223912.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 492
Score = 23.5 bits (49), Expect = 1.4
Identities = 14/37 (37%), Positives = 20/37 (53%), Gaps = 3/37 (8%)
Query: 59 FHHYYSNDSLIFHSQSLFLVSFFPCCFLFFFCFTAKR 95
F + S D+L SQS+ L+S F FL F + +R
Sbjct: 71 FFGFLSLDTLSLISQSIVLISAF---FLIFLALSKER 104
>ref|NP_223355.1| 3-OXOACID COA-TRANSFERASE, SUBUNIT A [Helicobacter pylori J99]
Length = 232
Score = 22.3 bits (46), Expect = 3.2
Identities = 6/12 (50%), Positives = 11/12 (91%)
Query: 43 HVYKGKRLQKRL 54
H+YKG++ +KR+
Sbjct: 212 HIYKGEKFEKRI 223
>ref|NP_223814.1| AMINO ACID ABC TRANSPORTER, PERMEASE PROTEIN [Helicobacter pylori
J99]
Length = 223
Score = 21.9 bits (45), Expect = 4.1
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 6/34 (17%)
Query: 8 AIVIKIILG----FCGKI--LPCRLCLENLSLLP 35
+IV+ ++LG F KI L CR+ LE++ ++P
Sbjct: 31 SIVVGMLLGSLMAFGSKIMVLACRVYLESIRIIP 64
>ref|NP_222956.1| ABC transporter, ATP-binding protein [Helicobacter pylori J99]
Length = 516
Score = 21.9 bits (45), Expect = 4.1
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 11 IKIILGFCGKILPCRLC-LENLSLLPESFDSFSHVYKGKRLQKRL 54
+ +I FC ++L + + E FD+ H Y + L+ RL
Sbjct: 472 LDVIKAFCDRVLVVSEGKIVETGAIEEVFDNPKHAYTKRLLESRL 516
>ref|NP_222830.1| putative [Helicobacter pylori J99]
Length = 308
Score = 21.2 bits (43), Expect = 7.1
Identities = 10/41 (24%), Positives = 25/41 (60%)
Query: 29 ENLSLLPESFDSFSHVYKGKRLQKRLVLRCFHHYYSNDSLI 69
++++ + E SFS +Y+G+ + + L+++ + +N LI
Sbjct: 153 KDINKILEGILSFSQIYQGQLVAEVLLIKGVNDSANNLKLI 193
>ref|NP_224178.1| Ubiquinol cytochrome c oxidoreductase, cytochrome b subunit
[Helicobacter pylori J99]
Length = 412
Score = 20.8 bits (42), Expect = 9.2
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 69 IFHSQSLFLVSFFPCCFLFFFCF 91
+F S+ +F+V F F + C+
Sbjct: 252 VFLSKDIFVVCTFMVFFFYLVCY 274
>ref|NP_223757.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 277
Score = 20.8 bits (42), Expect = 9.2
Identities = 8/23 (34%), Positives = 16/23 (68%)
Query: 59 FHHYYSNDSLIFHSQSLFLVSFF 81
F+HYYS +++ +S+++ V F
Sbjct: 227 FNHYYSMNNISNNSENVLKVLRF 249
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.340 0.150 0.512
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,264
Number of Sequences: 1491
Number of extensions: 3751
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 7
length of query: 107
length of database: 494,079
effective HSP length: 65
effective length of query: 42
effective length of database: 397,164
effective search space: 16680888
effective search space used: 16680888
T: 11
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 42 (20.8 bits)