BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645601|ref|NP_207777.1| hypothetical protein
[Helicobacter pylori 26695]
(237 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222734.1| putative [Helicobacter pylori J99] 28 0.28
ref|NP_223181.1| 50S RIBOSOMAL PROTEIN L9 [Helicobacter pyl... 26 0.81
ref|NP_223808.1| putative THIOREDOXIN REDUCTASE [Helicobact... 26 1.1
ref|NP_223624.1| GLYCYL-TRNA SYNTHETASE BETA CHAIN [Helicob... 25 1.4
ref|NP_224128.1| TYPE III RESTRICTION ENZYME [Helicobacter ... 25 1.8
ref|NP_223629.1| putative [Helicobacter pylori J99] 25 1.8
ref|NP_223368.1| putative [Helicobacter pylori J99] 25 1.8
ref|NP_223504.1| TYPE I RESTRICTION ENZYME (MODIFICATION SU... 24 3.1
ref|NP_223510.1| putative ADP-D-glycero-D-mannoheptose synt... 24 4.0
ref|NP_222801.1| putative [Helicobacter pylori J99] 23 5.3
ref|NP_222995.1| putative vacuolating cytotoxin (VacA) para... 23 6.9
ref|NP_224003.1| putative [Helicobacter pylori J99] 23 9.0
ref|NP_223732.1| putative SUGAR NUCLEOTIDE BIOSYNTHESIS [He... 23 9.0
ref|NP_223290.1| putative [Helicobacter pylori J99] 23 9.0
>ref|NP_222734.1| putative [Helicobacter pylori J99]
Length = 275
Score = 27.7 bits (60), Expect = 0.28
Identities = 22/90 (24%), Positives = 39/90 (42%), Gaps = 7/90 (7%)
Query: 154 IAFSDGKNLYVAECKSGELKN-----KGVLAALSADAQIFGGANAKCILISI--DGNLGQ 206
+AF+D + K + KN KG+ L D ++GG + S N+
Sbjct: 101 MAFNDASVRNLEATKLSQKKNFSPASKGIGQKLPIDRFVYGGVCNNFSIASFLKYDNVWH 160
Query: 207 VLQEKVKILNIEFIFKYFKKNIENYINNSR 236
+ E K+L EF ++ I+N +N+ +
Sbjct: 161 IYGENSKLLKYEFFYQKLLDWIKNQLNHQQ 190
>ref|NP_223181.1| 50S RIBOSOMAL PROTEIN L9 [Helicobacter pylori J99]
Length = 149
Score = 26.2 bits (56), Expect = 0.81
Identities = 17/71 (23%), Positives = 40/71 (55%), Gaps = 6/71 (8%)
Query: 21 DEKSLEKIQERKNLSSLLYEHRARIIPLYKRINENHAKNKTINICENNLKLFYKDHQVCV 80
++++LEK Q+ + + +L + + ++K++ N + I E +L K+ +
Sbjct: 56 EKEALEKAQKLQMVETL----QTITLTIHKKVGANGSLFGAITKEEITERL--KEQHASL 109
Query: 81 NIDKKEIKLRY 91
N+DKK+I+L++
Sbjct: 110 NLDKKDIELKH 120
>ref|NP_223808.1| putative THIOREDOXIN REDUCTASE [Helicobacter pylori J99]
Length = 324
Score = 25.8 bits (55), Expect = 1.1
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 49 YKRINENHAKNKTINICENNLKLFYKDHQVCVNIDKKEIKLRYSEDED---DFRKYIIGG 105
+ RINE++AKN + N LK + D +IK+ ++++ D Y IGG
Sbjct: 196 FSRINEDNAKNLQEVLDNNTLKSKLGVDIESLEEDNTQIKVNFTDNTSESFDRLLYAIGG 255
>ref|NP_223624.1| GLYCYL-TRNA SYNTHETASE BETA CHAIN [Helicobacter pylori J99]
Length = 701
Score = 25.4 bits (54), Expect = 1.4
Identities = 11/40 (27%), Positives = 22/40 (54%)
Query: 1 METFFSLHVPNRRIKQNGIIDEKSLEKIQERKNLSSLLYE 40
+E +F LH P ++ ++ +K +E + RKN +Y+
Sbjct: 649 IEAYFGLHAPLEEYFKSVLVMDKDIEIQKNRKNFLWGVYQ 688
>ref|NP_224128.1| TYPE III RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 969
Score = 25.0 bits (53), Expect = 1.8
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 22 EKSLEKIQERKNLS--SLLYEHRARIIPLYKRINENHAKNKTINICENNLKLF 72
E LEK+++ K L L + R+I ++ N+N K + I I + N K F
Sbjct: 616 EPELEKLKDEKYLDFEKLKDFLKDRLIGHFRVRNKNERKTEKIKINKENFKKF 668
>ref|NP_223629.1| putative [Helicobacter pylori J99]
Length = 487
Score = 25.0 bits (53), Expect = 1.8
Identities = 18/97 (18%), Positives = 47/97 (47%), Gaps = 12/97 (12%)
Query: 15 KQNGIIDEKSLEKIQERKNLSSLLYEHRARIIPLYKRINENHAKNKTINICENNLKLFYK 74
+++G+ DE+ + I ++ + +E + + ++I+ K T + +++L L+ K
Sbjct: 128 QKDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTT-PLEQSSLSLWAK 186
Query: 75 -----------DHQVCVNIDKKEIKLRYSEDEDDFRK 100
+ V ++++++E+K Y DF+K
Sbjct: 187 LQDKLDILILNPNDVKISLNEEEMKKYYENHRKDFKK 223
>ref|NP_223368.1| putative [Helicobacter pylori J99]
Length = 406
Score = 25.0 bits (53), Expect = 1.8
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 15/84 (17%)
Query: 66 ENNLKLFYKD--HQVCVNIDKKEIKLRYSEDEDDFRKYIIGGWFEEYIYCELLELLDK-Q 122
EN K YKD HQ+ D +E+ Y+ DE +G + ELL++ D
Sbjct: 312 ENEFKNRYKDKSHQIVFTKDAEELFTLYNSDE------YLG------VCGELLKVCDHLS 359
Query: 123 VICDLRLNMILGVGNTNATQGDKH 146
+ ++++ G+ + + QG K+
Sbjct: 360 AFLEAQISLSHGISSYDLIQGAKN 383
>ref|NP_223504.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
pylori J99]
Length = 528
Score = 24.3 bits (51), Expect = 3.1
Identities = 11/24 (45%), Positives = 16/24 (65%)
Query: 88 KLRYSEDEDDFRKYIIGGWFEEYI 111
+LR S D DF++Y++G F YI
Sbjct: 32 ELRGSVDGWDFKQYVLGILFYRYI 55
>ref|NP_223510.1| putative ADP-D-glycero-D-mannoheptose synthase [Helicobacter pylori
J99]
Length = 463
Score = 23.9 bits (50), Expect = 4.0
Identities = 11/29 (37%), Positives = 19/29 (64%), Gaps = 3/29 (10%)
Query: 131 MILGVGNTNATQ---GDKHPIYTELDIAF 156
+++G+ + N+ + GDK PI +E D AF
Sbjct: 360 LVVGLNSDNSIKRLKGDKRPIVSEKDRAF 388
>ref|NP_222801.1| putative [Helicobacter pylori J99]
Length = 450
Score = 23.5 bits (49), Expect = 5.3
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 11/70 (15%)
Query: 73 YKDHQVCVN--------IDKKEIKLRYSEDEDDFRKYIIGGWFEEYIYCELLELLDKQVI 124
YK Q +N + +++ + ++E +F K + E ++ LE DKQ I
Sbjct: 77 YKTRQYALNKGLQNEVIFETQKMAIGVGDEECEFMKKRYESFKEIFVG---LEEFDKQKI 133
Query: 125 CDLRLNMILG 134
+L N+ILG
Sbjct: 134 KELEPNVILG 143
>ref|NP_222995.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2902
Score = 23.1 bits (48), Expect = 6.9
Identities = 15/38 (39%), Positives = 17/38 (44%)
Query: 33 NLSSLLYEHRARIIPLYKRINENHAKNKTINICENNLK 70
NL+SL E I+ I NH N IN N LK
Sbjct: 474 NLTSLGSEKSVTILNSRGGITYNHLLNHAINSLTNALK 511
>ref|NP_224003.1| putative [Helicobacter pylori J99]
Length = 972
Score = 22.7 bits (47), Expect = 9.0
Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 197 LISIDGNLGQVLQEKVKILNI-EFIFKYFKKNIENYINN 234
L+S+ +G + ++ + + E + K F+K IE Y N
Sbjct: 140 LLSVAMGMGLIPKKNIMFFSANEHLIKQFEKEIEKYNRN 178
>ref|NP_223732.1| putative SUGAR NUCLEOTIDE BIOSYNTHESIS [Helicobacter pylori J99]
Length = 378
Score = 22.7 bits (47), Expect = 9.0
Identities = 9/35 (25%), Positives = 21/35 (59%)
Query: 14 IKQNGIIDEKSLEKIQERKNLSSLLYEHRARIIPL 48
+K +G IDE +LEK+ +K + + ++ + + +
Sbjct: 103 VKNDGNIDELALEKLITKKTKAIVSVDYAGKSVEI 137
>ref|NP_223290.1| putative [Helicobacter pylori J99]
Length = 683
Score = 22.7 bits (47), Expect = 9.0
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 214 ILNIEFIFKYFKKNIENYINNSRR 237
+ +I+ +K+F K ++NYI+ R
Sbjct: 145 VSHIKNNYKFFTKELDNYISKGYR 168
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.320 0.140 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 268,908
Number of Sequences: 1491
Number of extensions: 13078
Number of successful extensions: 40
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 35
Number of HSP's gapped (non-prelim): 14
length of query: 237
length of database: 494,079
effective HSP length: 75
effective length of query: 162
effective length of database: 382,254
effective search space: 61925148
effective search space used: 61925148
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)