BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645602|ref|NP_207778.1| hypothetical protein
[Helicobacter pylori 26695]
(77 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223659.1| putative [Helicobacter pylori J99] 105 1e-25
ref|NP_224003.1| putative [Helicobacter pylori J99] 25 0.22
ref|NP_223312.1| ASPARTATE AMMONIA-LYASE [Helicobacter pylo... 22 2.5
ref|NP_223994.1| putative [Helicobacter pylori J99] 22 3.2
ref|NP_223990.1| putative [Helicobacter pylori J99] 22 3.2
ref|NP_223838.1| DNA-DIRECTED RNA POLYMERASE, BETA SUBUNIT ... 22 3.2
ref|NP_223430.1| GUANOSINE-3',5'-BIS(DIPHOSPHATE) 3'-PYROPH... 22 3.2
ref|NP_223318.1| putative Outer membrane protein [Helicobac... 22 3.2
ref|NP_224044.1| putative [Helicobacter pylori J99] 21 4.2
ref|NP_223952.1| 50S RIBOSOMAL PROTEIN L22 [Helicobacter py... 21 4.2
ref|NP_222862.1| RECA PROTEIN. [Helicobacter pylori J99] 21 5.5
ref|NP_223820.1| putative Outer membrane function [Helicoba... 20 7.2
ref|NP_223979.1| putative Outer membrane protein [Helicobac... 20 9.4
ref|NP_222933.1| putative Outer membrane protein [Helicobac... 20 9.4
ref|NP_222781.1| putative [Helicobacter pylori J99] 20 9.4
>ref|NP_223659.1| putative [Helicobacter pylori J99]
Length = 677
Score = 105 bits (263), Expect = 1e-25
Identities = 53/62 (85%), Positives = 56/62 (89%)
Query: 1 MLDRAILDTKLDSRPMDLSFLDDILKHMQKPRFSDSDKVDKRLLIKFNQFKPPKQKSQIS 60
MLDRAILDTKLDSRPMDLSFLDDILKHMQKPRFSDSDKVDKRLLIKFNQF P + + +
Sbjct: 1 MLDRAILDTKLDSRPMDLSFLDDILKHMQKPRFSDSDKVDKRLLIKFNQFNPNSKFIKSN 60
Query: 61 LV 62
LV
Sbjct: 61 LV 62
>ref|NP_224003.1| putative [Helicobacter pylori J99]
Length = 972
Score = 25.4 bits (54), Expect = 0.22
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 22 DDILKHMQKPRFSDSDKVDKRLLIKFNQFK 51
DD+L+ ++ P F SD DK K FK
Sbjct: 393 DDLLEELKNPEFLFSDGKDKEKDYKIEVFK 422
>ref|NP_223312.1| ASPARTATE AMMONIA-LYASE [Helicobacter pylori J99]
Length = 468
Score = 21.9 bits (45), Expect = 2.5
Identities = 10/24 (41%), Positives = 14/24 (57%)
Query: 3 DRAILDTKLDSRPMDLSFLDDILK 26
DR+I D L+ + + LDDI K
Sbjct: 430 DRSIYDIALEKKILTKEQLDDIFK 453
>ref|NP_223994.1| putative [Helicobacter pylori J99]
Length = 168
Score = 21.6 bits (44), Expect = 3.2
Identities = 10/34 (29%), Positives = 21/34 (61%)
Query: 18 LSFLDDILKHMQKPRFSDSDKVDKRLLIKFNQFK 51
LS L + L+ +QK + D ++++++ N+FK
Sbjct: 84 LSHLYNQLQEIQKSMDKERDYLEEKIITLENKFK 117
>ref|NP_223990.1| putative [Helicobacter pylori J99]
Length = 1164
Score = 21.6 bits (44), Expect = 3.2
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 21 LDDILKHMQKPRFSDSDKVDKRLLIKFNQFKPPKQKS 57
+ +LK++QK + S S K L +++K K+K+
Sbjct: 522 IQTLLKNVQKQKESGSKNALKELKNLHSKYKLQKEKN 558
>ref|NP_223838.1| DNA-DIRECTED RNA POLYMERASE, BETA SUBUNIT [Helicobacter pylori J99]
Length = 2890
Score = 21.6 bits (44), Expect = 3.2
Identities = 15/55 (27%), Positives = 20/55 (36%)
Query: 10 KLDSRPMDLSFLDDILKHMQKPRFSDSDKVDKRLLIKFNQFKPPKQKSQISLVFG 64
K D RP D S L +K +V K I + KP + +FG
Sbjct: 1388 KEDDRPKDFSSFQLTLASPEKIHSWSYGEVKKPETINYRTLKPERDGLFCMKIFG 1442
>ref|NP_223430.1| GUANOSINE-3',5'-BIS(DIPHOSPHATE) 3'-PYROPHOSPHOHYDROLASE
[Helicobacter pylori J99]
Length = 776
Score = 21.6 bits (44), Expect = 3.2
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 4 RAILDTKLDSRPMDLSFLDD 23
RA+++ K R ++LS LDD
Sbjct: 752 RALINRKYQDRIVELSSLDD 771
>ref|NP_223318.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 906
Score = 21.6 bits (44), Expect = 3.2
Identities = 14/36 (38%), Positives = 21/36 (57%), Gaps = 4/36 (11%)
Query: 18 LSFLDDILKH-MQKPRFSD---SDKVDKRLLIKFNQ 49
LS++ D+L + + K R D S K+D +L FNQ
Sbjct: 70 LSYMSDMLANEIAKIRVGDMVDSKKIDTAVLALFNQ 105
>ref|NP_224044.1| putative [Helicobacter pylori J99]
Length = 792
Score = 21.2 bits (43), Expect = 4.2
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 25 LKHMQKPRFSDSDKVDKRLLIKFNQFKPPKQKSQISLVFGMNALVP 70
L+ + K F+D+ + + + +PPK + Q S++ + LVP
Sbjct: 218 LEGITKVGFTDNQQAHQEFWSVYE--RPPKSEFQASILERRDLLVP 261
>ref|NP_223952.1| 50S RIBOSOMAL PROTEIN L22 [Helicobacter pylori J99]
Length = 122
Score = 21.2 bits (43), Expect = 4.2
Identities = 9/34 (26%), Positives = 19/34 (55%)
Query: 42 RLLIKFNQFKPPKQKSQISLVFGMNALVPLGTIK 75
+ L+KF + P K + + GMNA + + +++
Sbjct: 3 KALLKFVRLSPTKARLIARQIQGMNAELAIASLE 36
>ref|NP_222862.1| RECA PROTEIN. [Helicobacter pylori J99]
Length = 347
Score = 20.8 bits (42), Expect = 5.5
Identities = 10/15 (66%), Positives = 10/15 (66%)
Query: 58 QISLVFGMNALVPLG 72
QI VFG ALV LG
Sbjct: 17 QIDKVFGKGALVRLG 31
>ref|NP_223820.1| putative Outer membrane function [Helicobacter pylori J99]
Length = 643
Score = 20.4 bits (41), Expect = 7.2
Identities = 11/32 (34%), Positives = 16/32 (49%)
Query: 45 IKFNQFKPPKQKSQISLVFGMNALVPLGTIKT 76
++ N +P K+ S S GM V + TI T
Sbjct: 586 LRTNLARPKKKDSDHSAQHGMELGVKIPTINT 617
>ref|NP_223979.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 696
Score = 20.0 bits (40), Expect = 9.4
Identities = 10/32 (31%), Positives = 16/32 (49%)
Query: 45 IKFNQFKPPKQKSQISLVFGMNALVPLGTIKT 76
++ N +P K+ S + GM V + TI T
Sbjct: 639 LRMNLARPKKKDSDHAAQHGMELGVKIPTINT 670
>ref|NP_222933.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 696
Score = 20.0 bits (40), Expect = 9.4
Identities = 10/32 (31%), Positives = 16/32 (49%)
Query: 45 IKFNQFKPPKQKSQISLVFGMNALVPLGTIKT 76
++ N +P K+ S + GM V + TI T
Sbjct: 639 LRMNLARPKKKDSDHAAQHGMELGVKIPTINT 670
>ref|NP_222781.1| putative [Helicobacter pylori J99]
Length = 139
Score = 20.0 bits (40), Expect = 9.4
Identities = 7/18 (38%), Positives = 11/18 (60%)
Query: 33 FSDSDKVDKRLLIKFNQF 50
F D+D K++L+ N F
Sbjct: 114 FLDTDNGSKKVLLNLNMF 131
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.323 0.141 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,683
Number of Sequences: 1491
Number of extensions: 2996
Number of successful extensions: 15
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of query: 77
length of database: 494,079
effective HSP length: 53
effective length of query: 24
effective length of database: 415,056
effective search space: 9961344
effective search space used: 9961344
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 40 (20.0 bits)