BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645607|ref|NP_207783.1| hypothetical protein
[Helicobacter pylori 26695]
(79 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223656.1| putative [Helicobacter pylori J99] 148 2e-38
ref|NP_223761.1| putative [Helicobacter pylori J99] 28 0.045
ref|NP_222949.1| NEUTROPHIL-ACTIVATING PROTEIN A [Helicobac... 27 0.100
ref|NP_223158.1| putative [Helicobacter pylori J99] 26 0.17
ref|NP_223659.1| putative [Helicobacter pylori J99] 23 1.4
ref|NP_223156.1| Outer membrane protein [Helicobacter pylor... 23 1.4
ref|NP_223916.1| TRYPTOPHAN SYNTHASE ALPHA CHAIN [Helicobac... 22 1.9
ref|NP_223617.1| putative [Helicobacter pylori J99] 22 1.9
ref|NP_223272.1| putative efflux transporter [Helicobacter ... 22 3.2
ref|NP_224072.1| putative CYTOCHROME C PEROXIDASE [Helicoba... 21 4.2
ref|NP_223425.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobact... 21 4.2
ref|NP_223296.1| putative [Helicobacter pylori J99] 21 4.2
ref|NP_223420.1| putative [Helicobacter pylori J99] 20 7.1
ref|NP_223350.1| putative HYDANTOIN UTILIZATION [Helicobact... 20 7.1
ref|NP_223711.1| PRIMOSOMAL PROTEIN N' (REPLICATION FACTOR ... 20 9.3
>ref|NP_223656.1| putative [Helicobacter pylori J99]
Length = 337
Score = 148 bits (373), Expect = 2e-38
Identities = 74/77 (96%), Positives = 75/77 (97%)
Query: 1 MIKLNGLNKTLKTSLLAEVLLGATAPLMAKPLLSDEDLLKRVKLHNIKEDTLTSCNAKVD 60
MI+L GLNKTLKTSLLA VLLGATAPLMAKPLLSDEDLLKRVKLHNIKEDTLTSCNAKVD
Sbjct: 1 MIRLKGLNKTLKTSLLAGVLLGATAPLMAKPLLSDEDLLKRVKLHNIKEDTLTSCNAKVD 60
Query: 61 GSQYLNSGWNLSKEFPQ 77
GSQYLNSGWNLSKEFPQ
Sbjct: 61 GSQYLNSGWNLSKEFPQ 77
Score = 41.6 bits (96), Expect = 3e-06
Identities = 17/41 (41%), Positives = 30/41 (72%), Gaps = 1/41 (2%)
Query: 30 KPLLSDEDLLKRVKLHNIKEDTLTSCNAKVDGSQY-LNSGW 69
KPL+S+ +LL ++L NIK++ + CN ++DGS+Y ++ W
Sbjct: 249 KPLMSNTELLNMIELTNIKKEYVMGCNMEIDGSKYPIHKDW 289
>ref|NP_223761.1| putative [Helicobacter pylori J99]
Length = 1154
Score = 27.7 bits (60), Expect = 0.045
Identities = 16/30 (53%), Positives = 18/30 (59%), Gaps = 2/30 (6%)
Query: 22 GATAPLMAKPLLSDEDLLKRVKLHNIKEDT 51
GAT L KPL S EDLLK + N+ E T
Sbjct: 273 GATENLTQKPLTSQEDLLKDTE--NLNETT 300
>ref|NP_222949.1| NEUTROPHIL-ACTIVATING PROTEIN A [Helicobacter pylori J99]
Length = 144
Score = 26.6 bits (57), Expect = 0.100
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 38 LLKRVKLHNIKEDTLTSCNAKVDGSQYLNSGWNLSKEFPQV 78
L + +KL +KE+T TS ++K + L +L KEF ++
Sbjct: 69 LSEAIKLTRVKEETKTSFHSKDIFKEILEDYKHLEKEFKEL 109
>ref|NP_223158.1| putative [Helicobacter pylori J99]
Length = 912
Score = 25.8 bits (55), Expect = 0.17
Identities = 11/17 (64%), Positives = 13/17 (75%)
Query: 30 KPLLSDEDLLKRVKLHN 46
KPL S EDLLK +L+N
Sbjct: 201 KPLTSQEDLLKNTELNN 217
>ref|NP_223659.1| putative [Helicobacter pylori J99]
Length = 677
Score = 22.7 bits (47), Expect = 1.4
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 36 EDLLKRVK-LHNIKEDTLTSCNAKVDGSQYLNSGWNLSKE 74
+ LK++K I +D L +CN + +++L NL+ E
Sbjct: 546 QGFLKQIKQFSKISKDILYTCNEIIGANRFLTHYDNLNLE 585
>ref|NP_223156.1| Outer membrane protein [Helicobacter pylori J99]
Length = 528
Score = 22.7 bits (47), Expect = 1.4
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 50 DTLTSCNAKVDGSQYLNSGWNLS 72
+T + K++GS +L GW ++
Sbjct: 61 ETFVNLTGKLEGSVHLGRGWTVN 83
>ref|NP_223916.1| TRYPTOPHAN SYNTHASE ALPHA CHAIN [Helicobacter pylori J99]
Length = 262
Score = 22.3 bits (46), Expect = 1.9
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 31 PLLSDEDLLKRVKLHNIKEDTLTSCNA 57
PL+ E ++K + H IK+ + S NA
Sbjct: 130 PLIEKELVIKSAQKHQIKQIFIASPNA 156
>ref|NP_223617.1| putative [Helicobacter pylori J99]
Length = 500
Score = 22.3 bits (46), Expect = 1.9
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 4 LNGLNKTLKTSLLAEVLLGATAPLMAKPLLSDEDLLKRVKLHNIKEDTLTSCNAK 58
+N K++L+ +VL AKP +SD ++K +L E TL A+
Sbjct: 1 MNAQELIKKSTLIEKVLQEQGLQEKAKPFMSDNAVIKTEEL----EKTLKEMQAE 51
>ref|NP_223272.1| putative efflux transporter [Helicobacter pylori J99]
Length = 1028
Score = 21.6 bits (44), Expect = 3.2
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 17/71 (23%)
Query: 2 IKLNGLNKTLKTSLLAEVLLGATAPLMAKPLLSDEDLLKRVKLHNIKEDTLTSCNAKVDG 61
++LNG + ++ + A LM K L+ DL +K N++ +DG
Sbjct: 171 VQLNGFRER-------QIRIYADPTLMNKYNLTYADLFSTLKAENVE----------IDG 213
Query: 62 SQYLNSGWNLS 72
+ +NS LS
Sbjct: 214 GRIVNSQRELS 224
>ref|NP_224072.1| putative CYTOCHROME C PEROXIDASE [Helicobacter pylori J99]
Length = 350
Score = 21.2 bits (43), Expect = 4.2
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 19 VLLGATAPLMAKPLLSDEDLLKRVK 43
+LL A LSD DL+K+ K
Sbjct: 5 ILLSALLAFSCAHALSDMDLIKKAK 29
>ref|NP_223425.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 358
Score = 21.2 bits (43), Expect = 4.2
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 8 NKTLKTSLLAEVLLGATAP 26
NKTL L +V L AT P
Sbjct: 310 NKTLARELYRDVKLNATIP 328
>ref|NP_223296.1| putative [Helicobacter pylori J99]
Length = 512
Score = 21.2 bits (43), Expect = 4.2
Identities = 12/46 (26%), Positives = 21/46 (45%)
Query: 31 PLLSDEDLLKRVKLHNIKEDTLTSCNAKVDGSQYLNSGWNLSKEFP 76
PLL L +V+ +++ +D +TS + L LS+ P
Sbjct: 20 PLLEQMALHLQVRFYSVYKDNMTSFYLQASAEITLEFAQKLSEILP 65
>ref|NP_223420.1| putative [Helicobacter pylori J99]
Length = 168
Score = 20.4 bits (41), Expect = 7.1
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 25 APLMAKPLLSDEDLLKRVKLHNIKEDTLTSCNAKVDGSQY 64
AP+M K ++ K + L + D+L + N +DG ++
Sbjct: 115 APIMDKHQKLNKKAQKALNLMRDQMDSLENGNYSLDGIRF 154
>ref|NP_223350.1| putative HYDANTOIN UTILIZATION [Helicobacter pylori J99]
Length = 765
Score = 20.4 bits (41), Expect = 7.1
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 61 GSQYLNSGWNLSKEFP 76
G+ Y+NS W + +P
Sbjct: 525 GNGYMNSDWGMMGGYP 540
>ref|NP_223711.1| PRIMOSOMAL PROTEIN N' (REPLICATION FACTOR Y) [Helicobacter pylori
J99]
Length = 619
Score = 20.0 bits (40), Expect = 9.3
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 43 KLHNIKEDTLTSCNAKVDGSQYLNSGWNLSK 73
KLHNI D + G+Q ++ G + +K
Sbjct: 420 KLHNILNDFNAQKTNILIGTQMISKGHDYAK 450
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.314 0.132 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,790
Number of Sequences: 1491
Number of extensions: 2465
Number of successful extensions: 16
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of query: 79
length of database: 494,079
effective HSP length: 55
effective length of query: 24
effective length of database: 412,074
effective search space: 9889776
effective search space used: 9889776
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.0 bits)
S2: 40 (20.0 bits)