BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645608|ref|NP_207784.1| hypothetical protein
[Helicobacter pylori 26695]
(83 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223043.1| putative [Helicobacter pylori J99] 23 1.1
ref|NP_223867.1| putative DGTP PYROPHOSPHOHYDROLASE [Helico... 22 2.4
ref|NP_223739.1| putative Outer membrane protein [Helicobac... 22 3.2
ref|NP_223623.1| putative [Helicobacter pylori J99] 21 4.1
ref|NP_223692.1| putative [Helicobacter pylori J99] 21 5.4
ref|NP_223334.1| putative [Helicobacter pylori J99] 21 5.4
ref|NP_223288.1| putative 2,3,4,5-TETRAHYDROPYRIDINE-2-CARB... 21 5.4
ref|NP_223606.1| putative aldehyde dehydrogenase [Helicobac... 20 7.0
ref|NP_223561.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [H... 20 7.0
ref|NP_223423.1| MOLYBDOPTERIN COFACTOR BIOSYNTHETIC PROTEI... 20 7.0
ref|NP_223384.1| putative [Helicobacter pylori J99] 20 7.0
ref|NP_223082.1| S-ADENOSYLMETHIONINE TRNA RIBOSYLTRANSFERA... 20 7.0
ref|NP_223069.1| putative [Helicobacter pylori J99] 20 7.0
ref|NP_223001.1| putative FLAGELLAR-HOOK ASSOCIATED PROTEIN... 20 7.0
ref|NP_223330.1| putative [Helicobacter pylori J99] 20 9.2
>ref|NP_223043.1| putative [Helicobacter pylori J99]
Length = 220
Score = 23.1 bits (48), Expect = 1.1
Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 8/63 (12%)
Query: 15 IGNKDKHVSLEYLIGLFMDKKTTNLSNTDKYIIGTIQTEA--------LEQEIEWFSQDY 66
+G+ + L L+G+F+ NL+ +++ + EA L I+W S
Sbjct: 77 LGSSQFVLPLSLLVGVFLSLYRKNLALGVWFVLSVVIFEALLESLKHLLAHSIQWLSHSA 136
Query: 67 HIP 69
+ P
Sbjct: 137 NFP 139
>ref|NP_223867.1| putative DGTP PYROPHOSPHOHYDROLASE [Helicobacter pylori J99]
Length = 157
Score = 21.9 bits (45), Expect = 2.4
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 47 IGTIQTEALEQEIEWFSQDYHIPMEN 72
IGT + E L Q W + D+ ME+
Sbjct: 62 IGTNEIEILAQYPRWIAYDFPSNMEH 87
>ref|NP_223739.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 511
Score = 21.6 bits (44), Expect = 3.2
Identities = 16/77 (20%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Query: 6 MLLATINNSIGNKDKHVSLEYLIGLFMDKKTTNLSNTDKYIIGTIQTEALEQEIEWFSQD 65
++ + I I ++++S++ F +N D +I L Q + + D
Sbjct: 31 IIASYIEKKINPNERYLSVKTFKLRFNSLDFKAQANDDSTLILKGDFSLLTQSV---NLD 87
Query: 66 YHIPMENILHVLSINPY 82
YHI ++N+ + PY
Sbjct: 88 YHIDIKNLRSFKDLIPY 104
>ref|NP_223623.1| putative [Helicobacter pylori J99]
Length = 431
Score = 21.2 bits (43), Expect = 4.1
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 11 INNSIGNKDKHVSLEYLIGLFMDKKTTNLS 40
+N + N+D + E+ IG +TNLS
Sbjct: 272 VNAKLANRDVFNAFEFGIGSESYNSSTNLS 301
>ref|NP_223692.1| putative [Helicobacter pylori J99]
Length = 196
Score = 20.8 bits (42), Expect = 5.4
Identities = 9/22 (40%), Positives = 15/22 (67%)
Query: 58 EIEWFSQDYHIPMENILHVLSI 79
E+E FS+ +P E IL +++I
Sbjct: 42 ELEEFSRLSELPKERILELVNI 63
>ref|NP_223334.1| putative [Helicobacter pylori J99]
Length = 263
Score = 20.8 bits (42), Expect = 5.4
Identities = 13/57 (22%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 29 GLFMDKKTTNLSNTDKYIIGTIQTEAL--EQEIEWFSQDYHIPMENILHVLSINPYQ 83
G MD K+ LSN++ +I ++ + + IE + + P N++ ++ P++
Sbjct: 142 GKEMDSKSVELSNSNTFIQSLLKLGSFLHGKTIESLNNPTNYPPINLVVTPALAPWK 198
>ref|NP_223288.1| putative 2,3,4,5-TETRAHYDROPYRIDINE-2-CARBOXYLATE
N-SUCCINYLTRANSFERASE [Helicobacter pylori J99]
Length = 401
Score = 20.8 bits (42), Expect = 5.4
Identities = 8/33 (24%), Positives = 17/33 (51%)
Query: 11 INNSIGNKDKHVSLEYLIGLFMDKKTTNLSNTD 43
+N + NK H +++ ++ L + L N+D
Sbjct: 96 LNEAYSNKMAHKNIQVVLELLKALEENRLKNSD 128
>ref|NP_223606.1| putative aldehyde dehydrogenase [Helicobacter pylori J99]
Length = 210
Score = 20.4 bits (41), Expect = 7.0
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Query: 2 SFAPMLLATINNSIGNKDKHVSLEYLIGLFMDKKTTNLSNTDKYIIGTIQT----EALEQ 57
SFA ML N+S+ + ++ + I + +L D IIG E LE+
Sbjct: 116 SFAQMLGVRFNHSMQKLESYILEQCYIAVGQICMGVSLMGLDSCIIGGFDPLKVGEILEE 175
Query: 58 EI 59
I
Sbjct: 176 RI 177
>ref|NP_223561.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 363
Score = 20.4 bits (41), Expect = 7.0
Identities = 14/51 (27%), Positives = 23/51 (44%), Gaps = 3/51 (5%)
Query: 10 TINNSIGNKDKHVSLEYLIGLFMDKKTTNLSNTDKYIIGTIQTEALEQEIE 60
TI N + DK+ ++ + ++ T TDK I T Q +E + E
Sbjct: 23 TIANGL---DKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEE 70
>ref|NP_223423.1| MOLYBDOPTERIN COFACTOR BIOSYNTHETIC PROTEIN [Helicobacter pylori
J99]
Length = 321
Score = 20.4 bits (41), Expect = 7.0
Identities = 6/21 (28%), Positives = 14/21 (66%)
Query: 59 IEWFSQDYHIPMENILHVLSI 79
+++F + +P++N+L L I
Sbjct: 34 LDFFDDEELLPLDNVLEFLKI 54
>ref|NP_223384.1| putative [Helicobacter pylori J99]
Length = 355
Score = 20.4 bits (41), Expect = 7.0
Identities = 12/50 (24%), Positives = 24/50 (48%)
Query: 11 INNSIGNKDKHVSLEYLIGLFMDKKTTNLSNTDKYIIGTIQTEALEQEIE 60
I + + +++KH SLE + +K L TD + + + +EI+
Sbjct: 35 IRSKLNDQEKHDSLEEIYKATNEKNFLQLFLTDYANLFAAKVIKVSKEID 84
>ref|NP_223082.1| S-ADENOSYLMETHIONINE TRNA RIBOSYLTRANSFERASE-ISOMERASE
[Helicobacter pylori J99]
Length = 345
Score = 20.4 bits (41), Expect = 7.0
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 57 QEIEWFSQDYHIPMENI 73
+E + S DYH+P E I
Sbjct: 2 KEFDLESYDYHLPKELI 18
>ref|NP_223069.1| putative [Helicobacter pylori J99]
Length = 438
Score = 20.4 bits (41), Expect = 7.0
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 5 PMLLATINNSIGNKDKHV 22
P LLA NN+I N + H+
Sbjct: 165 PNLLAFANNTIENINAHL 182
>ref|NP_223001.1| putative FLAGELLAR-HOOK ASSOCIATED PROTEIN 3 (HAP3) [Helicobacter
pylori J99]
Length = 828
Score = 20.4 bits (41), Expect = 7.0
Identities = 15/71 (21%), Positives = 29/71 (40%)
Query: 5 PMLLATINNSIGNKDKHVSLEYLIGLFMDKKTTNLSNTDKYIIGTIQTEALEQEIEWFSQ 64
P + I+++ +K+ L+ D + NL+ K II + + F +
Sbjct: 614 PAIYQQISDNPTSKESKERFIELLKQAKDNLSINLNEEGKVIIQDNMHSNTKMQFMLFDK 673
Query: 65 DYHIPMENILH 75
D + +N LH
Sbjct: 674 DANDFSQNALH 684
>ref|NP_223330.1| putative [Helicobacter pylori J99]
Length = 450
Score = 20.0 bits (40), Expect = 9.2
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 51 QTEALEQEIEWFS 63
QTEA+E+ E+FS
Sbjct: 178 QTEAIEKTKEYFS 190
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.317 0.134 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,463
Number of Sequences: 1491
Number of extensions: 3350
Number of successful extensions: 16
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of query: 83
length of database: 494,079
effective HSP length: 59
effective length of query: 24
effective length of database: 406,110
effective search space: 9746640
effective search space used: 9746640
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.2 bits)
S2: 40 (20.0 bits)