BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645609|ref|NP_207785.1| hypothetical protein
[Helicobacter pylori 26695]
(267 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223657.1| putative [Helicobacter pylori J99] 52 1e-08
ref|NP_223650.1| putative [Helicobacter pylori J99] 39 1e-04
ref|NP_222912.1| putative [Helicobacter pylori J99] 28 0.25
ref|NP_223158.1| putative [Helicobacter pylori J99] 27 0.56
ref|NP_223022.1| ARGINYL-TRNA SYNTHETASE [Helicobacter pylo... 27 0.56
ref|NP_222890.1| putative [Helicobacter pylori J99] 27 0.73
ref|NP_223801.1| putative Outer membrane protein [Helicobac... 26 0.96
ref|NP_223502.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUB... 26 0.96
ref|NP_223395.1| D-ALANYL-D-ALANINE-ADDING ENZYME [Helicoba... 26 1.2
ref|NP_223698.1| LYSIS TOLERANCE PROTEIN [Helicobacter pylo... 25 1.6
ref|NP_222952.1| FLAGELLAR P-RING PROTEIN [Helicobacter pyl... 25 1.6
ref|NP_223993.1| PHOSPHATIDYLSERINE DECARBOXYLASE [Helicoba... 25 2.1
ref|NP_223515.1| putative [Helicobacter pylori J99] 25 2.1
ref|NP_223461.1| IRON(III) DICITRATE TRANSPORT PROTEIN [Hel... 25 2.1
ref|NP_223046.1| putative FLAGELLAR EXPORT APPARATUS [Helic... 25 2.1
ref|NP_223033.1| cell division inhibitor [Helicobacter pylo... 25 2.1
ref|NP_223029.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [H... 25 2.1
ref|NP_222919.1| SUCCINYL-DIAMINOPIMELATE DESUCCINYLASE [He... 25 2.1
ref|NP_223490.1| putative [Helicobacter pylori J99] 25 2.8
ref|NP_223173.1| putative [Helicobacter pylori J99] 25 2.8
ref|NP_222851.1| A/G-SPECIFIC ADENINE GLYCOSYLASE [Helicoba... 24 3.6
ref|NP_224180.1| putative [Helicobacter pylori J99] 24 4.7
ref|NP_223645.1| putative [Helicobacter pylori J99] 24 4.7
ref|NP_224034.1| DNA transfer protein [Helicobacter pylori ... 23 6.2
ref|NP_223761.1| putative [Helicobacter pylori J99] 23 6.2
ref|NP_223659.1| putative [Helicobacter pylori J99] 23 6.2
ref|NP_223441.1| PREPROTEIN TRANSLOCASE SUBUNIT [Helicobact... 23 6.2
ref|NP_223387.1| putative [Helicobacter pylori J99] 23 6.2
ref|NP_223838.1| DNA-DIRECTED RNA POLYMERASE, BETA SUBUNIT ... 23 8.1
ref|NP_223757.1| putative Outer membrane protein [Helicobac... 23 8.1
ref|NP_223475.1| putative osmoprotection binding protein [H... 23 8.1
>ref|NP_223657.1| putative [Helicobacter pylori J99]
Length = 325
Score = 52.4 bits (124), Expect = 1e-08
Identities = 45/145 (31%), Positives = 67/145 (46%), Gaps = 30/145 (20%)
Query: 145 ENIIAKKITFRKTDNKTRDIFDIAVALHNDNNLFDKLLSSQKITKQDLLTLQNSLQELDK 204
++++ +K+ D I++ ++ D+N +KI D LT N+ LD
Sbjct: 189 DDVVCQKV-LSNIDELNARIYNFPQSILKDDN-------DKKINYYDFLTQTNNKDCLDA 240
Query: 205 K-RYSIEIDMVEP---ISHYKDLSLSAYDFLIDKIDQIKTA------------------T 242
R IDM + I + +S +FL +D+ K+
Sbjct: 241 LLRIYPRIDMNKIHSIIDNTPFMSEIHKEFLHTMLDERKSKIIDVAHTRAIELSLQHKQA 300
Query: 243 YSNSHDNADDLDNSNEYTPTPKRRR 267
+SN +DNADDLDNSNEYTPTPKRRR
Sbjct: 301 HSNPYDNADDLDNSNEYTPTPKRRR 325
>ref|NP_223650.1| putative [Helicobacter pylori J99]
Length = 267
Score = 39.3 bits (90), Expect = 1e-04
Identities = 69/256 (26%), Positives = 109/256 (41%), Gaps = 44/256 (17%)
Query: 39 NLGLNPSSIKFGGGTALSMYYFQHRLSFDMDLFVNDA-QCLGFFS---PKLWIDNCSHF- 93
NL P +K G TAL + Y +R S D+D + LG P I N H
Sbjct: 29 NLADTPMVLK--GETALYLGYGLNRFSEDLDFDCHKKINLLGRVKSAIPNGIILNDIHIK 86
Query: 94 ---DST-RYIDQHNHIGVTNKDNIKIDVLVDYASNEGYVDNSKKIFAFDIYIESLENIIA 149
DS RY+ ++ + +K+++ A E V+ + + I +E II
Sbjct: 87 KDTDSVGRYMVRYATKDNKEEQTLKLEISYRDAPKESEVNVIE-----GMRIAKIERIID 141
Query: 150 KKITF----RKTDNKTRDIFDIA-VALHNDNNLFDKLLSSQKITKQD------------- 191
K+ T K RD+FD+ +A H + + L S K +D
Sbjct: 142 NKLCACFDGEHTRTKARDLFDLHFLAKHYEEHFNLDLASRLKDFSKDPDKLVSDYLVDVK 201
Query: 192 LLTLQNSLQELDKKRYSIEIDMVEPISHYKDLSLSAYDFLIDKIDQIKTATYSNSHDNAD 251
L L N + +L++ ++E+ ++ + H K L ++ + + + YSN N +
Sbjct: 202 LDALLNQIMDLEET--ALELGVMAQLIHKK---LEKQSHSLNALQEQQG--YSN---NDN 251
Query: 252 DLDNSNEYTPTPKRRR 267
LDNSNE T TPKRRR
Sbjct: 252 SLDNSNENTYTPKRRR 267
>ref|NP_222912.1| putative [Helicobacter pylori J99]
Length = 916
Score = 28.1 bits (61), Expect = 0.25
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 16/92 (17%)
Query: 180 KLLSSQKITKQDLLTLQNSLQELDK----------------KRYSIEIDMVEPISHYKDL 223
K LS+ +I QD+ + L+ELDK K EID PI+
Sbjct: 157 KELSASEIKPQDMEDILKKLEELDKIFKTTDFTKFTPKTEIKDIIKEIDEKYPINENFKR 216
Query: 224 SLSAYDFLIDKIDQIKTATYSNSHDNADDLDN 255
+ ++ I+K D+IK N +++N
Sbjct: 217 QFNEFESNIEKHDEIKKDFERNKESLIREIEN 248
>ref|NP_223158.1| putative [Helicobacter pylori J99]
Length = 912
Score = 26.9 bits (58), Expect = 0.56
Identities = 20/59 (33%), Positives = 32/59 (53%), Gaps = 4/59 (6%)
Query: 115 IDVLVDYASNEGYVDNSKKIFAFDIYIESLENIIAKKITFRKTDNKTRDIFDIAVALHN 173
I VL Y + +D KK+ A IY SL+NI+AK + F K + ++A+ ++N
Sbjct: 446 IAVLSHYEAKLKELD--KKLDADSIY--SLKNIVAKNLNFDKATHPNVGDSNLALLMYN 500
>ref|NP_223022.1| ARGINYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 541
Score = 26.9 bits (58), Expect = 0.56
Identities = 13/59 (22%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 116 DVLVDYASNEGYVDNSKKIFAFDIYIESLENIIAKKITFRKTDNKTRDIFDIAVALHND 174
+VL +Y N+ + + ++ +++ E+++ + +T+ + K I +IA HND
Sbjct: 149 EVLCEYYVND--MGSQIRLLGVSVWLAYKEHVLKESVTYPEVFYKGEYIIEIAKKAHND 205
Score = 23.1 bits (48), Expect = 8.1
Identities = 26/105 (24%), Positives = 49/105 (45%), Gaps = 22/105 (20%)
Query: 109 NKDNIKIDVLVDYASNEGYVDNSKKIFAFDIYIESLENIIAKKITFRKTDNKTRDIFDIA 168
N++ I I+VL DYA + ++ + A DI+ +S ++K F+ D
Sbjct: 214 NEETI-IEVLSDYAKDLMLLEIKGNLDALDIHFDS---YASEKEVFKHKD---------- 259
Query: 169 VALHNDNNLFDKLLSSQKITKQDLLT-LQNSLQELDKKRYSIEID 212
+FD+L + + ++D T L++SL + + R I+ D
Sbjct: 260 -------AVFDRLEKANALYEKDSKTWLKSSLYQDESDRVLIKED 297
>ref|NP_222890.1| putative [Helicobacter pylori J99]
Length = 236
Score = 26.6 bits (57), Expect = 0.73
Identities = 16/49 (32%), Positives = 28/49 (56%), Gaps = 4/49 (8%)
Query: 99 IDQHNHIGVTNKDNIKIDVLVDYASNEGYVDNSKKIF--AFDIYIESLE 145
+D H+ KDN+ + + D N+G +DN+K+ F A D +E+L+
Sbjct: 157 LDGVKHVEKNLKDNL--EEMSDEVKNKGSIDNAKESFNKATDKGVEALK 203
>ref|NP_223801.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 1237
Score = 26.2 bits (56), Expect = 0.96
Identities = 15/37 (40%), Positives = 22/37 (58%), Gaps = 2/37 (5%)
Query: 226 SAYDFLIDKIDQIKTATYSNSHD-NADDLDNSNEYTP 261
+AY L D D K TY++S+ N+ + N+N YTP
Sbjct: 783 TAYQMLTDASDG-KLGTYNSSNSSNSSNSGNNNGYTP 818
>ref|NP_223502.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUBUNIT) [Helicobacter
pylori J99]
Length = 875
Score = 26.2 bits (56), Expect = 0.96
Identities = 31/140 (22%), Positives = 56/140 (39%), Gaps = 12/140 (8%)
Query: 109 NKDNIKIDVLVDYASN-EGYVDNSKKIFAFDIYIESL--ENIIAKKITFRKTDNKTRDIF 165
NKD I +L Y +GY DN+K+ ++ IE L E + + I +F
Sbjct: 585 NKDARSIALLRKYEDYLKGYADNNKEYEGYEGLIERLLTEFPLKEPIISESQKKDFIKLF 644
Query: 166 DIAVALHNDNNLFDKLLSSQKITKQDLLTLQNSL--------QELDKKRYSIEIDMVEPI 217
+ L N N F+ I +D Q+ E + + I D++ I
Sbjct: 645 GKILKLENILNSFENFNKDDHINPRDFQDYQSKYLDFYDEMRPEKGRDKEEINDDLIFEI 704
Query: 218 SHYKDLSLSAYDFLIDKIDQ 237
K + ++ D+++ I++
Sbjct: 705 ELIKQVEVN-IDYILTLIEK 723
>ref|NP_223395.1| D-ALANYL-D-ALANINE-ADDING ENZYME [Helicobacter pylori J99]
Length = 493
Score = 25.8 bits (55), Expect = 1.2
Identities = 15/43 (34%), Positives = 22/43 (50%), Gaps = 2/43 (4%)
Query: 160 KTRDIFDIAVALH--NDNNLFDKLLSSQKITKQDLLTLQNSLQ 200
K +FD+A+ N + KL + QKI +D L+N LQ
Sbjct: 432 KIDGVFDVAIITGELNSKTIASKLKTPQKILLKDKAQLENILQ 474
>ref|NP_223698.1| LYSIS TOLERANCE PROTEIN [Helicobacter pylori J99]
Length = 274
Score = 25.4 bits (54), Expect = 1.6
Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 197 NSLQELDKKRYSIEIDMVEPISHYKDLSLSAYDFLIDKIDQIK---TATYSNSHDNADDL 253
NSL+EL +K+ ++ +V + L +L+++ +++ T + S++ L
Sbjct: 138 NSLEELQEKKLQRKVALVSQTTKQTPKLLQIASYLVERCTEVRIFNTICNATSYNQKAAL 197
Query: 254 DNSNE 258
D S E
Sbjct: 198 DLSKE 202
>ref|NP_222952.1| FLAGELLAR P-RING PROTEIN [Helicobacter pylori J99]
Length = 342
Score = 25.4 bits (54), Expect = 1.6
Identities = 15/52 (28%), Positives = 23/52 (43%)
Query: 9 NEKSLSFIKNNFQAQIQALEQFYPIIKNALNLGLNPSSIKFGGGTALSMYYF 60
N +LS NF+ IQ + N + + L+P +I+ LSM F
Sbjct: 170 NAMTLSLKNPNFKNAIQVQNTLNKVFGNKVAIALDPKTIQITRPERLSMVEF 221
>ref|NP_223993.1| PHOSPHATIDYLSERINE DECARBOXYLASE [Helicobacter pylori J99]
Length = 267
Score = 25.0 bits (53), Expect = 2.1
Identities = 10/30 (33%), Positives = 18/30 (59%)
Query: 195 LQNSLQELDKKRYSIEIDMVEPISHYKDLS 224
+Q S+ L K + I++ EP+ +YK L+
Sbjct: 24 IQKSINALYVKIFKIDLSEFEPLENYKSLN 53
>ref|NP_223515.1| putative [Helicobacter pylori J99]
Length = 541
Score = 25.0 bits (53), Expect = 2.1
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 182 LSSQKITKQDLLTL---QNSLQELDKKRYSIEIDMVEPISH--YKDLSLSAYDF 230
L+S K+ L T+ N L L+K+ Y IE+D+ + S+ YK ++ ++ F
Sbjct: 308 LNSVKLPFASLNTIVLNNNKLYSLEKRGYVIEVDLNDFDSYNVYKTPTIGSFKF 361
>ref|NP_223461.1| IRON(III) DICITRATE TRANSPORT PROTEIN [Helicobacter pylori J99]
Length = 792
Score = 25.0 bits (53), Expect = 2.1
Identities = 9/17 (52%), Positives = 13/17 (75%)
Query: 56 SMYYFQHRLSFDMDLFV 72
S YYF H++SF+ + FV
Sbjct: 577 SRYYFNHQVSFNANYFV 593
>ref|NP_223046.1| putative FLAGELLAR EXPORT APPARATUS [Helicobacter pylori J99]
Length = 258
Score = 25.0 bits (53), Expect = 2.1
Identities = 22/101 (21%), Positives = 43/101 (41%), Gaps = 28/101 (27%)
Query: 117 VLVDYASNEGYVDNSKKIFAFDIYIESLENIIAKKITFRKTDNKTRDIFDIAVALHNDNN 176
VL++ A N+GY KI F++ + K R+ H+ N
Sbjct: 91 VLIENAKNDGY-----------------------KIGFKEGEEKMRNELT-----HSVNE 122
Query: 177 LFDKLLSSQKITKQDLLTLQNSLQELDKKRYSIEIDMVEPI 217
++LL + + + + +N L L+K+ +I ID+ + +
Sbjct: 123 EKNQLLHAITALDEKMKSSENHLMALEKELSAIAIDIAKEV 163
>ref|NP_223033.1| cell division inhibitor [Helicobacter pylori J99]
Length = 268
Score = 25.0 bits (53), Expect = 2.1
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 19/74 (25%)
Query: 126 GYVDNSKKIFA--FDIYIESLENIIA--KKITFRK---------------TDNKTRDIFD 166
G ++ KK+ A FDI + +L+ I+ +I + TD KT+++
Sbjct: 26 GLAESGKKVVAVDFDIGLRNLDMILGLENRIVYDVVDVMEKNCNLSQALITDKKTKNLSF 85
Query: 167 IAVALHNDNNLFDK 180
+A + D N+ DK
Sbjct: 86 LAASQSKDKNILDK 99
>ref|NP_223029.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 180
Score = 25.0 bits (53), Expect = 2.1
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 106 GVTNKDNIKIDVLVDYASNEGYVDNS 131
G +KD IDVL+ Y +GY D S
Sbjct: 151 GFISKDKEFIDVLLYYKDKKGYNDQS 176
>ref|NP_222919.1| SUCCINYL-DIAMINOPIMELATE DESUCCINYLASE [Helicobacter pylori J99]
Length = 388
Score = 25.0 bits (53), Expect = 2.1
Identities = 22/79 (27%), Positives = 33/79 (40%), Gaps = 7/79 (8%)
Query: 18 NNFQAQIQALEQFYPIIKNALNLGLNPSSIKFGGGTALS-MYYFQHRLSFDMD-LFVNDA 75
NN+Q+ + F PIIK G +K G G LS F + F + L +D
Sbjct: 92 NNWQS-----DPFKPIIKEGFLYGRGAQDMKGGVGAFLSASLNFNPKTPFLLSILLTSDE 146
Query: 76 QCLGFFSPKLWIDNCSHFD 94
+ G F +L ++ D
Sbjct: 147 EGPGIFGTRLMLEKLKEKD 165
>ref|NP_223490.1| putative [Helicobacter pylori J99]
Length = 296
Score = 24.6 bits (52), Expect = 2.8
Identities = 21/108 (19%), Positives = 48/108 (44%), Gaps = 7/108 (6%)
Query: 113 IKIDVLVDYASNEGYVDNSKKIFAFDIYIESLENIIAKKITFRKTDNK----TRDIFDIA 168
I+ L + ++ D + F F+ + I K ++ T N R ++
Sbjct: 168 IQSKALKRFLKDQNDKDRQIQTFTFNDTKTQIAQIKGKISSYVYTTNNGSLSLRPFYESF 227
Query: 169 VALHNDNNLF---DKLLSSQKITKQDLLTLQNSLQELDKKRYSIEIDM 213
+ +N++ +K L + +I+K ++ ++S +LD + +I ID+
Sbjct: 228 LLEKKSDNVYTIENKALDTMEISKCQMVLKKHSTDKLDSQHKAISIDL 275
>ref|NP_223173.1| putative [Helicobacter pylori J99]
Length = 251
Score = 24.6 bits (52), Expect = 2.8
Identities = 15/86 (17%), Positives = 41/86 (47%), Gaps = 10/86 (11%)
Query: 150 KKITFRKTDNKTRDIFDIAVALHNDNNLFDKLLSSQKITKQDLLTLQNSLQELDKKRYSI 209
+K F +NK + +++++ + + ++++ L L+N+L+ L+K++ I
Sbjct: 78 EKYHFLGANNKVKTLYELS----------EMIYYAKRLGLISLENLENTLKFLEKQKQFI 127
Query: 210 EIDMVEPISHYKDLSLSAYDFLIDKI 235
E + + ++ DF + +I
Sbjct: 128 EDNFMITRERFRSHQFGGMDFELSRI 153
>ref|NP_222851.1| A/G-SPECIFIC ADENINE GLYCOSYLASE [Helicobacter pylori J99]
Length = 328
Score = 24.3 bits (51), Expect = 3.6
Identities = 11/27 (40%), Positives = 16/27 (58%)
Query: 205 KRYSIEIDMVEPISHYKDLSLSAYDFL 231
KR + + ++P H KDL + A DFL
Sbjct: 144 KRVLLRLFGLDPNIHAKDLQIKANDFL 170
>ref|NP_224180.1| putative [Helicobacter pylori J99]
Length = 176
Score = 23.9 bits (50), Expect = 4.7
Identities = 13/41 (31%), Positives = 21/41 (50%), Gaps = 3/41 (7%)
Query: 9 NEKSLSFIKNNFQAQIQALEQFYPII---KNALNLGLNPSS 46
N+ + + ++ ++Q PI KNALN+G NP S
Sbjct: 131 NKAFYTSFRQHYNTLFNEVKQIKPIQSEQKNALNVGYNPIS 171
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 23.9 bits (50), Expect = 4.7
Identities = 28/118 (23%), Positives = 50/118 (41%), Gaps = 29/118 (24%)
Query: 109 NKDNIKIDVLVDYASNEGYVDNSKKIFAFD---------IYIESLEN------IIAKKIT 153
+K +K DVL+ +SNE Y + K I + +Y + +N + KI
Sbjct: 878 HKTTLKTDVLIIDSSNERYQEVQKLIKNLERRELVKWDNLYFQLEQNNEMGIFLKPTKIN 937
Query: 154 FRKTDNKTRDIFDIAVALHNDNNLFDKLLSSQKITKQDLLTLQNSLQELDKKRYSIEI 211
+ D++ + F I AL++ +T +L L + L EL+ KR + +
Sbjct: 938 SKVQDSRLKAYFKIKDALND-------------LTSAELNPLSSDL-ELENKRAKLNL 981
>ref|NP_224034.1| DNA transfer protein [Helicobacter pylori J99]
Length = 304
Score = 23.5 bits (49), Expect = 6.2
Identities = 29/120 (24%), Positives = 45/120 (37%), Gaps = 17/120 (14%)
Query: 89 NCSHFDSTRYIDQHNHIGVTNKDNIKIDVLVDYASNEGYVDNSKKIFAFDIYIESLENII 148
NCS TRY NH +T + I +++ V D + K+ ESL+N+
Sbjct: 81 NCS-IPFTRYRVSANHFSITTNNQITLNIRVPRLKPLSLEDFTFKV----SNPESLKNLA 135
Query: 149 AKKITFRKTDNKTRDIFDIAVALHNDNNLFDKLLSSQKITKQDLLTLQNSLQELDKKRYS 208
K +I +L + LL + K + + QELD K +S
Sbjct: 136 L----------KGHNILISGETSSGKTSLLNALLDC--VNKDERVVSVEDSQELDLKAFS 183
>ref|NP_223761.1| putative [Helicobacter pylori J99]
Length = 1154
Score = 23.5 bits (49), Expect = 6.2
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 132 KKIFAFDIYIESLENIIAKKITFRKTDNKTRDIFDIAVALHN 173
KK+ A IY SL+NI+A + F K + ++A+ + N
Sbjct: 541 KKLDADSIY--SLKNIVANNLNFDKATHPNVGDSNLALLMFN 580
>ref|NP_223659.1| putative [Helicobacter pylori J99]
Length = 677
Score = 23.5 bits (49), Expect = 6.2
Identities = 11/40 (27%), Positives = 23/40 (57%)
Query: 187 ITKQDLLTLQNSLQELDKKRYSIEIDMVEPISHYKDLSLS 226
+ K+ LL L+ L++ +++ + V+ HY++ SLS
Sbjct: 502 LAKERLLFLEQDLKQKEEEFERAKEHYVKSSKHYRETSLS 541
>ref|NP_223441.1| PREPROTEIN TRANSLOCASE SUBUNIT [Helicobacter pylori J99]
Length = 865
Score = 23.5 bits (49), Expect = 6.2
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 189 KQDLLTLQNSLQELDKKRYSIEIDMVE 215
K + LQN+ +EL K+ S+E D+ E
Sbjct: 37 KMSDVELQNAFEELKKRVRSVEKDLQE 63
>ref|NP_223387.1| putative [Helicobacter pylori J99]
Length = 371
Score = 23.5 bits (49), Expect = 6.2
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 16 IKNNFQAQIQALEQFYPIIKNALNLGLNPSS 46
+ N + + ++ IIK NLGLNP+S
Sbjct: 197 VGKNIEQLEERVKDSLAIIKRINNLGLNPNS 227
>ref|NP_223838.1| DNA-DIRECTED RNA POLYMERASE, BETA SUBUNIT [Helicobacter pylori J99]
Length = 2890
Score = 23.1 bits (48), Expect = 8.1
Identities = 19/74 (25%), Positives = 38/74 (50%), Gaps = 8/74 (10%)
Query: 173 NDNNLFDKLLSSQKITKQDLLTLQNSLQ-ELDKK--RYSIEIDMVEPISHYKDLSLSAYD 229
N N D ++ S++ITK D+ T + + E+D + ++ +E + I K+ +L+
Sbjct: 818 NGYNFEDAIVVSERITKDDVFTSTHIYEKEVDARELKHGVE-EFTADIPDVKEEALAH-- 874
Query: 230 FLIDKIDQIKTATY 243
+D+ +K TY
Sbjct: 875 --LDESGIVKVGTY 886
>ref|NP_223757.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 277
Score = 23.1 bits (48), Expect = 8.1
Identities = 14/54 (25%), Positives = 26/54 (47%), Gaps = 3/54 (5%)
Query: 14 SFIKNNFQAQIQALEQFYPIIKNALNLGLNPSSIKFGGGTALSMYYFQHRLSFD 67
+ ++N F ++ L F ++ + LG + +FG G + YYF H S +
Sbjct: 184 TLLQNTFGGKVN-LNGFQFLVDLGVRLGNEHN--QFGFGIKIPTYYFNHYYSMN 234
>ref|NP_223475.1| putative osmoprotection binding protein [Helicobacter pylori J99]
Length = 553
Score = 23.1 bits (48), Expect = 8.1
Identities = 12/37 (32%), Positives = 20/37 (53%), Gaps = 3/37 (8%)
Query: 13 LSFIKNNFQAQIQALEQFYPIIKNALNLGLNPSSIKF 49
L + + + A +A E+ +IK A+ LG NP + F
Sbjct: 132 LPIVHSTYNALKEAREE---VIKAAIGLGCNPKELFF 165
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.319 0.136 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 305,405
Number of Sequences: 1491
Number of extensions: 14485
Number of successful extensions: 83
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 61
Number of HSP's gapped (non-prelim): 33
length of query: 267
length of database: 494,079
effective HSP length: 76
effective length of query: 191
effective length of database: 380,763
effective search space: 72725733
effective search space used: 72725733
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)