BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645614|ref|NP_207790.1| hypothetical protein
[Helicobacter pylori 26695]
(61 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223646.1| putative [Helicobacter pylori J99] 65 4e-13
ref|NP_224003.1| putative [Helicobacter pylori J99] 26 0.18
ref|NP_223176.1| putative [Helicobacter pylori J99] 26 0.18
ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [He... 26 0.18
ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATE... 23 0.90
ref|NP_223247.1| putative SIDEROPHORE-MEDIATED IRON TRANSPO... 23 1.5
ref|NP_223978.1| SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEI... 22 2.0
ref|NP_223515.1| putative [Helicobacter pylori J99] 22 2.0
ref|NP_223415.1| putative [Helicobacter pylori J99] 22 2.0
ref|NP_223195.1| cag island protein [Helicobacter pylori J99] 22 2.0
ref|NP_222823.1| 24kDa chaperone [Helicobacter pylori J99] 22 2.6
ref|NP_223197.1| cag island protein [Helicobacter pylori J99] 22 3.4
ref|NP_223194.1| cag island protein [Helicobacter pylori J99] 22 3.4
ref|NP_223761.1| putative [Helicobacter pylori J99] 21 4.5
ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helico... 21 4.5
ref|NP_223025.1| putative [Helicobacter pylori J99] 21 4.5
ref|NP_224083.1| putative TYPE II DNA MODIFICATION ENZYME (... 21 5.8
ref|NP_223788.1| putative [Helicobacter pylori J99] 21 5.8
ref|NP_223659.1| putative [Helicobacter pylori J99] 21 5.8
ref|NP_222991.1| putative [Helicobacter pylori J99] 21 5.8
ref|NP_222929.1| putative [Helicobacter pylori J99] 21 5.8
ref|NP_224074.1| putative [Helicobacter pylori J99] 20 7.6
ref|NP_222774.1| putative [Helicobacter pylori J99] 20 7.6
ref|NP_223510.1| putative ADP-D-glycero-D-mannoheptose synt... 20 9.9
>ref|NP_223646.1| putative [Helicobacter pylori J99]
Length = 150
Score = 64.7 bits (156), Expect = 4e-13
Identities = 31/52 (59%), Positives = 41/52 (78%)
Query: 1 MSKDRDYKPVFNPKSKEVLEKMNAEKRASLVDEREEVKEQANQEAYRPMKKA 52
MSKDR+YKP FNPKSKEVL+ +NAEKRASL +EREE + N +++ ++ A
Sbjct: 62 MSKDRNYKPAFNPKSKEVLKNLNAEKRASLENEREEQGVKGNTKSHDEIEPA 113
>ref|NP_224003.1| putative [Helicobacter pylori J99]
Length = 972
Score = 25.8 bits (55), Expect = 0.18
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 21 KMNAEKRASLVDEREEVKEQANQEAYRPMKKAANDDYD 58
K+ A+K+ L+ +EVKE A + KK A + D
Sbjct: 748 KVKADKKEKLIQTIQEVKEHAPLDKETLRKKIAQGEID 785
>ref|NP_223176.1| putative [Helicobacter pylori J99]
Length = 450
Score = 25.8 bits (55), Expect = 0.18
Identities = 14/37 (37%), Positives = 21/37 (55%), Gaps = 1/37 (2%)
Query: 16 KEVLEKMNAEKRASLVDEREEVKEQANQEAYRPMKKA 52
KE +++ EK+ +D RE K + QEA + KKA
Sbjct: 239 KEKRKEVRIEKKEERIDAREN-KREIKQEAIKEPKKA 274
Score = 23.9 bits (50), Expect = 0.69
Identities = 11/43 (25%), Positives = 24/43 (55%)
Query: 14 KSKEVLEKMNAEKRASLVDEREEVKEQANQEAYRPMKKAANDD 56
+S++ +K A K+A +ERE+ ++ +++ +KA D
Sbjct: 304 RSRDERKKTKATKKAMEFEEREKEHDERDEKETEERRKALEMD 346
Score = 22.3 bits (46), Expect = 2.0
Identities = 10/32 (31%), Positives = 17/32 (52%)
Query: 13 PKSKEVLEKMNAEKRASLVDEREEVKEQANQE 44
P SKE ++ EK+ + ++R EQ +E
Sbjct: 398 PSSKEEKRRLKEEKKKAKAEQRAREFEQRARE 429
Score = 21.6 bits (44), Expect = 3.4
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 16 KEVLEKMNAEKRASLVDEREEVKEQANQEAYRPMKKA 52
KE +K AE+RA ++R ++ +++ +KA
Sbjct: 408 KEEKKKAKAEQRAREFEQRAREHQERDEKELEERRKA 444
>ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [Helicobacter pylori J99]
Length = 681
Score = 25.8 bits (55), Expect = 0.18
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 4 DRDYKPVFNPKSKEVLEKMNA-EKRASLVDEREEVKEQANQEAYRPMKKAAND 55
D D V +PK + E+ E+R +V E+++ + + QE+++ + KA +
Sbjct: 239 DDDENSVSDPKKDDDSEEDEENEERKKVVSEKDKKRVEKVQESFKALDKAKKE 291
>ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATED IMMUNODOMINANT
ANTIGEN [Helicobacter pylori J99]
Length = 1167
Score = 23.5 bits (49), Expect = 0.90
Identities = 11/41 (26%), Positives = 21/41 (50%)
Query: 11 FNPKSKEVLEKMNAEKRASLVDEREEVKEQANQEAYRPMKK 51
F+P K +++K + + R + + +E AN+ P KK
Sbjct: 39 FDPNQKPIVDKNDRDNRQAFEKISQLREEFANKAIKNPTKK 79
>ref|NP_223247.1| putative SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEIN [Helicobacter
pylori J99]
Length = 317
Score = 22.7 bits (47), Expect = 1.5
Identities = 14/56 (25%), Positives = 25/56 (44%)
Query: 3 KDRDYKPVFNPKSKEVLEKMNAEKRASLVDEREEVKEQANQEAYRPMKKAANDDYD 58
K KP K+ + +EK+ +K E ++V EQ ++ KK ++D
Sbjct: 122 KPEPKKPNHKHKALKKVEKVEEKKVVEEKKEEKKVVEQKVEQKKIEEKKPVKKEFD 177
>ref|NP_223978.1| SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEIN [Helicobacter pylori
J99]
Length = 280
Score = 22.3 bits (46), Expect = 2.0
Identities = 12/49 (24%), Positives = 21/49 (42%)
Query: 8 KPVFNPKSKEVLEKMNAEKRASLVDEREEVKEQANQEAYRPMKKAANDD 56
+P PK +E E+ + V ++ VKE+ QE + A +
Sbjct: 132 EPKEEPKKEEAKEEAKEKSVPKQVTTKDIVKEKDKQEESNKTSEGATSE 180
>ref|NP_223515.1| putative [Helicobacter pylori J99]
Length = 541
Score = 22.3 bits (46), Expect = 2.0
Identities = 10/32 (31%), Positives = 17/32 (52%)
Query: 13 PKSKEVLEKMNAEKRASLVDEREEVKEQANQE 44
P SKE ++ EK+ + ++R EQ +E
Sbjct: 489 PSSKEEKRRLKEEKKKAKAEQRAREFEQRARE 520
Score = 21.6 bits (44), Expect = 3.4
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 16 KEVLEKMNAEKRASLVDEREEVKEQANQEAYRPMKKA 52
KE +K AE+RA ++R ++ +++ +KA
Sbjct: 499 KEEKKKAKAEQRAREFEQRAREHQERDEKELEERRKA 535
>ref|NP_223415.1| putative [Helicobacter pylori J99]
Length = 529
Score = 22.3 bits (46), Expect = 2.0
Identities = 9/37 (24%), Positives = 23/37 (61%)
Query: 16 KEVLEKMNAEKRASLVDEREEVKEQANQEAYRPMKKA 52
+++ E++ A+K A + +E KE+ +++Y + +A
Sbjct: 167 EQLEEELEAQKSALIRRYEKEAKEEGKKKSYAILAEA 203
>ref|NP_223195.1| cag island protein [Helicobacter pylori J99]
Length = 522
Score = 22.3 bits (46), Expect = 2.0
Identities = 11/35 (31%), Positives = 20/35 (56%)
Query: 17 EVLEKMNAEKRASLVDEREEVKEQANQEAYRPMKK 51
E LE M + +A+ + + EE+ ++ +EA R K
Sbjct: 215 ERLEDMQEQAQANALKQIEELNKKQAEEAVRQRAK 249
>ref|NP_222823.1| 24kDa chaperone [Helicobacter pylori J99]
Length = 191
Score = 21.9 bits (45), Expect = 2.6
Identities = 11/40 (27%), Positives = 20/40 (49%)
Query: 7 YKPVFNPKSKEVLEKMNAEKRASLVDEREEVKEQANQEAY 46
Y+ + K ++ EK A ++ + E E+K Q +E Y
Sbjct: 20 YQKAYACKEQQGEEKQEASEKEGEIKEDFELKYQEMREQY 59
>ref|NP_223197.1| cag island protein [Helicobacter pylori J99]
Length = 252
Score = 21.6 bits (44), Expect = 3.4
Identities = 10/29 (34%), Positives = 18/29 (61%)
Query: 10 VFNPKSKEVLEKMNAEKRASLVDEREEVK 38
+FN ++ ++K+ AE S +RE+VK
Sbjct: 135 MFNENIRQFVDKVRAEAIISSNIQREKVK 163
>ref|NP_223194.1| cag island protein [Helicobacter pylori J99]
Length = 1819
Score = 21.6 bits (44), Expect = 3.4
Identities = 12/36 (33%), Positives = 17/36 (46%)
Query: 21 KMNAEKRASLVDEREEVKEQANQEAYRPMKKAANDD 56
K AEK L +E E+ Q+A +K A D+
Sbjct: 448 KTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDE 483
>ref|NP_223761.1| putative [Helicobacter pylori J99]
Length = 1154
Score = 21.2 bits (43), Expect = 4.5
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 19 LEKMNAEKRASLVDEREEVKEQANQEAYRPMKKAAND 55
LE NAEK A L E+ E + + +KK ++
Sbjct: 965 LELANAEKLAKLETEKAFKAEAVKKLDFNEIKKLIDE 1001
>ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helicobacter pylori J99]
Length = 949
Score = 21.2 bits (43), Expect = 4.5
Identities = 10/28 (35%), Positives = 15/28 (52%)
Query: 26 KRASLVDEREEVKEQANQEAYRPMKKAA 53
K+AS ++EE K Q + + KK A
Sbjct: 89 KKASKTPKKEETKAQPKPKKTKEKKKEA 116
>ref|NP_223025.1| putative [Helicobacter pylori J99]
Length = 501
Score = 21.2 bits (43), Expect = 4.5
Identities = 10/40 (25%), Positives = 21/40 (52%)
Query: 16 KEVLEKMNAEKRASLVDEREEVKEQANQEAYRPMKKAAND 55
KE +++ EK+ D + +A QE + +++ +ND
Sbjct: 252 KEETQEIKEEKQEKTQDSPSAQELEAMQELVKEIQENSND 291
Score = 20.8 bits (42), Expect = 5.8
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 9 PVFNPKSKEVLEKMNAE--KRASLVDEREEVKEQANQE 44
P N + E ++ E K+ + + +EEVKE+ QE
Sbjct: 163 PTLNEQEGETPKEEAQEEVKKEEVKEMQEEVKEKQKQE 200
>ref|NP_224083.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 678
Score = 20.8 bits (42), Expect = 5.8
Identities = 12/31 (38%), Positives = 18/31 (57%), Gaps = 1/31 (3%)
Query: 29 SLVDER-EEVKEQANQEAYRPMKKAANDDYD 58
SL DE E ++E+ NQE + + N+ YD
Sbjct: 194 SLSDEDLERIREKKNQEIEDCLMQLNNNIYD 224
>ref|NP_223788.1| putative [Helicobacter pylori J99]
Length = 433
Score = 20.8 bits (42), Expect = 5.8
Identities = 12/31 (38%), Positives = 19/31 (60%), Gaps = 3/31 (9%)
Query: 24 AEKRAS---LVDEREEVKEQANQEAYRPMKK 51
A K+AS L DER ++ E+A + A+ +K
Sbjct: 82 AVKQASALALQDERAKIIEEARKNAFLEQQK 112
>ref|NP_223659.1| putative [Helicobacter pylori J99]
Length = 677
Score = 20.8 bits (42), Expect = 5.8
Identities = 11/37 (29%), Positives = 18/37 (47%)
Query: 20 EKMNAEKRASLVDEREEVKEQANQEAYRPMKKAANDD 56
E+ A+ + E+E+ KE A Q+A +DD
Sbjct: 621 EQARAKAHYQAMLEKEKAKELAKQQANTLHSNELDDD 657
>ref|NP_222991.1| putative [Helicobacter pylori J99]
Length = 418
Score = 20.8 bits (42), Expect = 5.8
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 8 KPVFNPKSKEVLEKMNAEKRASLVDEREEVK 38
K VF +KE + + EK+ +D+ E K
Sbjct: 90 KGVFGHDNKEKINALLQEKKRFFIDDNLENK 120
>ref|NP_222929.1| putative [Helicobacter pylori J99]
Length = 86
Score = 20.8 bits (42), Expect = 5.8
Identities = 9/41 (21%), Positives = 20/41 (47%)
Query: 16 KEVLEKMNAEKRASLVDEREEVKEQANQEAYRPMKKAANDD 56
+E K+ + +A + V + E Y+ ++K AN++
Sbjct: 13 RETKNKLGRKPKADANKKTRAVSLYFSDEQYQKLEKMANEE 53
>ref|NP_224074.1| putative [Helicobacter pylori J99]
Length = 225
Score = 20.4 bits (41), Expect = 7.6
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 14 KSKEVLEKMNAEKRASLVDEREEVKEQANQEAYRPMKKA 52
K+ + + + + + S + + V QA QEA +KKA
Sbjct: 176 KTTKTSKNGSQDFQESAIQSLQHVSTQAMQEAISLIKKA 214
>ref|NP_222774.1| putative [Helicobacter pylori J99]
Length = 327
Score = 20.4 bits (41), Expect = 7.6
Identities = 9/43 (20%), Positives = 22/43 (50%)
Query: 14 KSKEVLEKMNAEKRASLVDEREEVKEQANQEAYRPMKKAANDD 56
K K +EK E+ + + E ++ +++ + + +AN+D
Sbjct: 250 KEKIAIEKSELEREIARLKSLEGMEAKSDLDLHNRRLASANED 292
>ref|NP_223510.1| putative ADP-D-glycero-D-mannoheptose synthase [Helicobacter pylori
J99]
Length = 463
Score = 20.0 bits (40), Expect = 9.9
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 16 KEVLEKMNAEKRASLVD 32
KE+ + +NA+ R +L+D
Sbjct: 113 KEIKDPLNADLRKNLLD 129
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.306 0.124 0.326
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,928
Number of Sequences: 1491
Number of extensions: 2511
Number of successful extensions: 30
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of query: 61
length of database: 494,079
effective HSP length: 37
effective length of query: 24
effective length of database: 438,912
effective search space: 10533888
effective search space used: 10533888
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.7 bits)
S2: 40 (20.0 bits)