BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645615|ref|NP_207791.1| PARA protein [Helicobacter
pylori 26695]
(218 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223652.1| putative [Helicobacter pylori J99] 227 2e-61
ref|NP_223033.1| cell division inhibitor [Helicobacter pylo... 42 1e-05
ref|NP_223784.1| putative [Helicobacter pylori J99] 39 1e-04
ref|NP_222914.1| putative [Helicobacter pylori J99] 31 0.030
ref|NP_223109.1| putative [Helicobacter pylori J99] 29 0.11
ref|NP_224019.1| putative [Helicobacter pylori J99] 28 0.19
ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATE... 26 0.95
ref|NP_223645.1| putative [Helicobacter pylori J99] 25 1.2
ref|NP_223255.1| SUBUNIT OF 2-OXOGLUTARATE OXIDOREDUCTASE [... 25 1.2
ref|NP_223274.1| putative vacuolating cytotoxin (VacA) para... 25 1.6
ref|NP_222888.1| abc transporter, ATP-binding protein [Heli... 25 1.6
ref|NP_223331.1| putative [Helicobacter pylori J99] 24 2.8
ref|NP_223574.1| putative vacuolating cytotoxin (VacA) para... 24 3.6
ref|NP_223113.1| FLAGELLAR MOTOR SWITCH PROTEIN [Helicobact... 24 3.6
ref|NP_222895.1| putative [Helicobacter pylori J99] 23 4.7
ref|NP_223319.1| putative [Helicobacter pylori J99] 23 6.2
ref|NP_222756.1| DNA transformation competancy [Helicobacte... 23 6.2
ref|NP_224191.1| PENICILLIN-BINDING PROTEIN [Helicobacter p... 23 8.0
ref|NP_223800.1| putative Outer membrane protein [Helicobac... 23 8.0
ref|NP_223488.1| putative [Helicobacter pylori J99] 23 8.0
ref|NP_223199.1| cag island protein [Helicobacter pylori J99] 23 8.0
>ref|NP_223652.1| putative [Helicobacter pylori J99]
Length = 180
Score = 227 bits (578), Expect = 2e-61
Identities = 111/176 (63%), Positives = 143/176 (81%)
Query: 43 LEVFNNIRSETSLPNFTLFNRTGNITDTLKQMMDKYEYILIDTKGEHSKESQRAMLLSDW 102
+E F IR+E P F+LFNR+ +DTLKQM+ KYE ILIDTKGE+SKE+Q+AMLLS+
Sbjct: 1 METFATIRAEKERPTFSLFNRSSGFSDTLKQMVSKYENILIDTKGEYSKETQKAMLLSNI 60
Query: 103 VLIPTTPSQLDTAVLLDMLERIRDIQALNENLKACIVMNRIPTIPTLKEKKALIDFINQN 162
VL+PTTPSQLDT VL +MLERI +Q LNENL+A IV+NR+PTIPTLKE++ALI+FI +N
Sbjct: 61 VLVPTTPSQLDTEVLANMLERIEQLQELNENLRALIVINRMPTIPTLKERQALIEFIKEN 120
Query: 163 NANESVFLMDNLLSERIAYKRSVSEGMGVMEYNDNKAKNEWSQFYDELNGYLRIKK 218
N ++ + L+++ LSERI YKRSVSEG+GV+EY+D KA NEW FY+EL +L +K
Sbjct: 121 NPSDRITLLESSLSERIVYKRSVSEGLGVIEYSDKKAINEWVNFYNELKSHLEKEK 176
>ref|NP_223033.1| cell division inhibitor [Helicobacter pylori J99]
Length = 268
Score = 42.4 bits (98), Expect = 1e-05
Identities = 38/179 (21%), Positives = 76/179 (42%), Gaps = 36/179 (20%)
Query: 1 MIITIANEKGGSGKSTLCLNLCVQLLLDKKDIAALDTD-SQKSLEVFNNIRSETSLPNFT 59
+++TI + KGG GKST NL + L K + A+D D ++L++ + +
Sbjct: 3 IVVTITSGKGGVGKSTTTANLAIGLAESGKKVVAVDFDIGLRNLDMILGLENRIVYDVVD 62
Query: 60 LFNRTGNITDTL-------------------KQMMDK-------------YEYILIDTKG 87
+ + N++ L K ++DK ++YILID+
Sbjct: 63 VMEKNCNLSQALITDKKTKNLSFLAASQSKDKNILDKEKVAILINALRADFDYILIDSPA 122
Query: 88 EHSKESQRAMLLSDWVLIPTTP---SQLDTAVLLDMLERIRDIQALNENLKACIVMNRI 143
+ A+L +D L+ TP S D+ ++ +++ + E + +++NR+
Sbjct: 123 GIESGFEHAILHADMALVVVTPEVSSLRDSDRVIGIIDAKSNRAKSGEEVHKHLIINRL 181
>ref|NP_223784.1| putative [Helicobacter pylori J99]
Length = 264
Score = 38.9 bits (89), Expect = 1e-04
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 2 IITIANEKGGSGKSTLCLNLCVQLLLDKKDIAALDTDSQ 40
II +AN+KGG GK+T +NL L +K I +D D Q
Sbjct: 5 IIAVANQKGGVGKTTTAVNLAASLAAHEKKILLIDFDPQ 43
>ref|NP_222914.1| putative [Helicobacter pylori J99]
Length = 368
Score = 30.8 bits (68), Expect = 0.030
Identities = 14/37 (37%), Positives = 22/37 (58%)
Query: 2 IITIANEKGGSGKSTLCLNLCVQLLLDKKDIAALDTD 38
++ I++ KGG GKST +NL + L + + LD D
Sbjct: 99 VVMISSGKGGVGKSTTSVNLSIALANLNQKVGLLDAD 135
>ref|NP_223109.1| putative [Helicobacter pylori J99]
Length = 294
Score = 28.9 bits (63), Expect = 0.11
Identities = 43/186 (23%), Positives = 75/186 (40%), Gaps = 10/186 (5%)
Query: 3 ITIANEKGGSGKSTLCLNLCVQLLLDKKDIAALDTD-SQKSLEVFNNIRSETSLPNFTLF 61
I I + KGG GKS + NL L + D D +L+V +++ ++
Sbjct: 30 IAITSGKGGVGKSNISANLAYSLYKKGYKVGVFDADIGLANLDVIFGVKTHKNI--LHAL 87
Query: 62 NRTGNITDTLKQMMDKYEYILIDTKGEHSKESQRAMLLSDWVLIPTTPSQLDTAVLLDML 121
+ + + ++ I D+ E K A L +V S LD +++D
Sbjct: 88 KGEAKLQEIICEIEPGLCLIPGDSGEEILKYISGAEALDRFVDEEGVLSSLD-YIVIDTG 146
Query: 122 ERIRDIQALNENLKACIVMNRIPTIPTLKEKKALIDFINQNNANESVFLMDNLLSE---- 177
I N C+V+ P + + A I IN N +E +FL+ N++++
Sbjct: 147 AGIGATTQAFLNASDCVVIVTTPDPSAITDAYACIK-INSKNKDE-LFLIANMVAQPKEG 204
Query: 178 RIAYKR 183
R Y+R
Sbjct: 205 RATYER 210
>ref|NP_224019.1| putative [Helicobacter pylori J99]
Length = 314
Score = 28.1 bits (61), Expect = 0.19
Identities = 12/24 (50%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 192 MEYNDNKAKNEWSQFYDELNGYLR 215
+E+ DN K+EW++ +DE N YLR
Sbjct: 143 LEFEDNIKKSEWNKKFDE-NTYLR 165
>ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATED IMMUNODOMINANT ANTIGEN
[Helicobacter pylori J99]
Length = 1167
Score = 25.8 bits (55), Expect = 0.95
Identities = 24/97 (24%), Positives = 44/97 (44%), Gaps = 10/97 (10%)
Query: 36 DTDSQKSLEVFNNIRSE---TSLPNFTLFNRT-GNITDTLKQMMDKYEYILIDT----KG 87
D D++++ E + +R E ++ N T N+ + ++DK LIDT K
Sbjct: 51 DRDNRQAFEKISQLREEFANKAIKNPTKKNQYFSSFISKSNDLIDKDN--LIDTGSSIKS 108
Query: 88 EHSKESQRAMLLSDWVLIPTTPSQLDTAVLLDMLERI 124
+QR + +WV PS+++T + +E I
Sbjct: 109 FQKFGTQRYQIFMNWVSHQNDPSKINTQKIRGFMENI 145
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 25.4 bits (54), Expect = 1.2
Identities = 22/90 (24%), Positives = 36/90 (39%), Gaps = 9/90 (10%)
Query: 130 LNENLKACIVMNRIPTIPTLKEKKALIDFINQNNANESVFLMDNL--------LSERIAY 181
L + LK + R IPT E K L D N+ + + + + + +SE + +
Sbjct: 2071 LKQELKDLETLQRSVIIPTHTEIK-LYDLKNEESKDYELIKVKEVEPLKENASMSEELTH 2129
Query: 182 KRSVSEGMGVMEYNDNKAKNEWSQFYDELN 211
K+ + + E N K QF LN
Sbjct: 2130 KKLKEQNKQIAEQNKEKLDAIKKQFASNLN 2159
>ref|NP_223255.1| SUBUNIT OF 2-OXOGLUTARATE OXIDOREDUCTASE [Helicobacter pylori J99]
Length = 375
Score = 25.4 bits (54), Expect = 1.2
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Query: 71 LKQMMDKYEYILID--TKGEHSKESQRAM 97
LK++ DKYE IL+ KG++ +E +R M
Sbjct: 320 LKEIGDKYEKILVIELNKGQYLEEIERVM 348
>ref|NP_223274.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 3194
Score = 25.0 bits (53), Expect = 1.6
Identities = 16/70 (22%), Positives = 36/70 (50%), Gaps = 9/70 (12%)
Query: 28 DKKDIAALDTDSQKSLEVFNNIRSETSLPNFTLFNRTGNITDTLKQMMDKYEYILIDTKG 87
D K++ T++ + + F+ ++ S+ N ++FN ++T DK Y L+ G
Sbjct: 1153 DTKNVTFKGTNTLINSDPFSRLKGSVSIDNNSIFNIERDLT-------DKTTYTLL--SG 1203
Query: 88 EHSKESQRAM 97
++ K + +A+
Sbjct: 1204 DNIKYNNQAL 1213
>ref|NP_222888.1| abc transporter, ATP-binding protein [Helicobacter pylori J99]
Length = 213
Score = 25.0 bits (53), Expect = 1.6
Identities = 19/43 (44%), Positives = 25/43 (57%), Gaps = 10/43 (23%)
Query: 11 GSGKSTLCLNLCVQL--------LLDKKDIAALDTDSQKSLEV 45
GSGKSTL +L L LL+ +DI AL +S+K LE+
Sbjct: 36 GSGKSTLLSHLATMLKPDSGTVSLLEHQDIYAL--NSKKLLEL 76
>ref|NP_223331.1| putative [Helicobacter pylori J99]
Length = 1167
Score = 24.3 bits (51), Expect = 2.8
Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 27 LDKKDIAALDTDSQKSLEVFN---NIRSETSLPNFTLFNRTGNITDTLKQMMDKYE 79
L K+D+ ALD ++Q+ ++ N S+ ++ + NI D+ + +M+ Y+
Sbjct: 21 LAKQDVIALDDENQEDNDLKNKADTFVSQRAISFCKSIQTSKNIKDSFETIMECYD 76
>ref|NP_223574.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2399
Score = 23.9 bits (50), Expect = 3.6
Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 5/69 (7%)
Query: 3 ITIANEKGGSGKSTLCLNLCVQLLLDKKDIAALDTDSQKSLEVFNNIRSETSLPNFT--- 59
IT N G +TL N + +++ D +QKS F + S +FT
Sbjct: 180 ITTGNSYADGGGTTLNFNATNNITINQASFDNSDAGTQKSYMNFKGSNIKISGSSFTDDT 239
Query: 60 --LFNRTGN 66
FN +GN
Sbjct: 240 NGGFNFSGN 248
>ref|NP_223113.1| FLAGELLAR MOTOR SWITCH PROTEIN [Helicobacter pylori J99]
Length = 285
Score = 23.9 bits (50), Expect = 3.6
Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Query: 28 DKKDIAALDTDSQKSLEVFN----NIRSETSLPNFTLFNRTGNITDTLKQMMDKYEYILI 83
++ D LD + + +F +++S+ LP I L + D + ++
Sbjct: 85 EEMDNDDLDAFKEMASNIFGAIATSLKSQELLPKLNFTTTNAEIAKELPKKEDYAKAMVF 144
Query: 84 DTKGEHSKESQRAMLLS 100
K E KESQ +L++
Sbjct: 145 SFKMEAIKESQIVLLIT 161
>ref|NP_222895.1| putative [Helicobacter pylori J99]
Length = 567
Score = 23.5 bits (49), Expect = 4.7
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Query: 117 LLDMLERIRDIQALNENLKACIVMNRIPTIPTLKEK---KALIDFINQNNANESVFLMDN 173
+LD + ++ + + +NE L+ + M + L+E KA+ F + N+ + L+D
Sbjct: 154 ILDKISKLSE-EEVNERLEVLLKM----VLMRLEEPDPGKAIRTFQSVNDRGVPLLLLDK 208
Query: 174 LLSERIAYKRSVSEG 188
L S I Y + +G
Sbjct: 209 LKSLLIYYSNTFCDG 223
>ref|NP_223319.1| putative [Helicobacter pylori J99]
Length = 353
Score = 23.1 bits (48), Expect = 6.2
Identities = 11/36 (30%), Positives = 21/36 (57%)
Query: 117 LLDMLERIRDIQALNENLKACIVMNRIPTIPTLKEK 152
+++ L+R+RD+Q +A I+ + P LKE+
Sbjct: 212 VIEHLQRVRDLQDETGGFRAFILWSFQPNNTPLKEE 247
>ref|NP_222756.1| DNA transformation competancy [Helicobacter pylori J99]
Length = 247
Score = 23.1 bits (48), Expect = 6.2
Identities = 12/43 (27%), Positives = 20/43 (45%)
Query: 143 IPTIPTLKEKKALIDFINQNNANESVFLMDNLLSERIAYKRSV 185
I +P K + +DF+NQ+ + D +S A RS+
Sbjct: 72 ISILPLQKTEHHFVDFLNQDKHYAIIQRADKSISSNEALARSL 114
>ref|NP_224191.1| PENICILLIN-BINDING PROTEIN [Helicobacter pylori J99]
Length = 588
Score = 22.7 bits (47), Expect = 8.0
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 75 MDKYEYILIDTKGEHSKESQRAMLLSDWVLIPTTPSQLDTAVLLDMLERIR 125
M K E+ LI T+G + + + +++ V PS+L LL+ +E I+
Sbjct: 43 MTKKEF-LIPTRGNITDRNHEFLAINELVFGVFLPSRLKQKELLEKIEVIQ 92
>ref|NP_223800.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 697
Score = 22.7 bits (47), Expect = 8.0
Identities = 14/58 (24%), Positives = 27/58 (46%)
Query: 155 LIDFINQNNANESVFLMDNLLSERIAYKRSVSEGMGVMEYNDNKAKNEWSQFYDELNG 212
LI + N +++ ++LLS +AY ++ + +NK N + +LNG
Sbjct: 377 LIGTSSYNQMQDAINYGESLLSNTVAYGDFITNWVAPYLDLNNKGLNFLPNYGGQLNG 434
>ref|NP_223488.1| putative [Helicobacter pylori J99]
Length = 196
Score = 22.7 bits (47), Expect = 8.0
Identities = 14/52 (26%), Positives = 28/52 (52%), Gaps = 2/52 (3%)
Query: 116 VLLDMLERIRDIQALNEN--LKACIVMNRIPTIPTLKEKKALIDFINQNNAN 165
V+L R I+ L E LK ++ R+ +++K+A+ D+I N+++
Sbjct: 129 VVLIYAPRALQIERLLERDKLKEAEILQRLACQMDIEQKRAMSDYIIDNSSS 180
>ref|NP_223199.1| cag island protein [Helicobacter pylori J99]
Length = 280
Score = 22.7 bits (47), Expect = 8.0
Identities = 26/117 (22%), Positives = 46/117 (39%), Gaps = 5/117 (4%)
Query: 98 LLSDWVLIPTTPSQLDTAVLLDM-LERIRDIQALNENLKACI-VMNRIPTIPTLKEKKAL 155
L+ + IP DT ++ + L +D N+ + +++ I + + +
Sbjct: 43 LIEKYSEIPLNDKLKDTPFMVQVKLPNYKDYLLDNKQVVLTFKLVHHSKKITLIGDANKI 102
Query: 156 IDFINQNNANESVFLMDNLLSERIAYKRSVSEGMGVMEYNDNKAKNEWSQFYDELNG 212
+ + N AN + +D L + K V M YNDN E Q +D L G
Sbjct: 103 LQYKNYFQANGARSDIDFYLQPTLNQKGVV---MIASNYNDNPNNKEKPQTFDVLQG 156
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.316 0.133 0.368
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 222,919
Number of Sequences: 1491
Number of extensions: 9371
Number of successful extensions: 53
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 38
Number of HSP's gapped (non-prelim): 21
length of query: 218
length of database: 494,079
effective HSP length: 74
effective length of query: 144
effective length of database: 383,745
effective search space: 55259280
effective search space used: 55259280
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)