BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645616|ref|NP_207792.1| hypothetical protein
[Helicobacter pylori 26695]
(94 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223651.1| putative [Helicobacter pylori J99] 54 6e-10
ref|NP_223275.1| putative [Helicobacter pylori J99] 30 0.007
ref|NP_223140.1| OLIGOPEPTIDASE [Helicobacter pylori J99] 30 0.011
ref|NP_223415.1| putative [Helicobacter pylori J99] 29 0.019
ref|NP_223062.1| multi-drug resistance protein [Helicobacte... 28 0.032
ref|NP_224153.1| putative [Helicobacter pylori J99] 25 0.21
ref|NP_224041.1| putative [Helicobacter pylori J99] 25 0.21
ref|NP_223648.1| topoisomerase I [Helicobacter pylori J99] 24 0.47
ref|NP_223278.1| ASPARTYL-TRNA SYNTHETASE [Helicobacter pyl... 24 0.47
ref|NP_222761.1| putative SUGAR NUCLEOTIDE BIOSYNTHESIS [He... 23 0.80
ref|NP_224128.1| TYPE III RESTRICTION ENZYME [Helicobacter ... 23 1.0
ref|NP_222872.1| putative histidine kinase sensor protein [... 23 1.0
ref|NP_224013.1| putative ENDONUCLEASE [Helicobacter pylori... 22 1.8
ref|NP_223610.1| putative [Helicobacter pylori J99] 22 1.8
ref|NP_224160.1| TYPE II RESTRICTION ENZYME [Helicobacter p... 22 2.3
ref|NP_224130.1| ATP-DEPENDENT DNA HELICASE [Helicobacter p... 22 2.3
ref|NP_224022.1| putative [Helicobacter pylori J99] 22 3.0
ref|NP_223970.1| co-chaperone with DnaK [Helicobacter pylor... 22 3.0
ref|NP_223801.1| putative Outer membrane protein [Helicobac... 22 3.0
ref|NP_223504.1| TYPE I RESTRICTION ENZYME (MODIFICATION SU... 22 3.0
ref|NP_223340.1| putative [Helicobacter pylori J99] 22 3.0
ref|NP_222776.1| putative [Helicobacter pylori J99] 22 3.0
ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (... 21 4.0
ref|NP_223645.1| putative [Helicobacter pylori J99] 21 4.0
ref|NP_223441.1| PREPROTEIN TRANSLOCASE SUBUNIT [Helicobact... 21 4.0
ref|NP_223104.1| putative [Helicobacter pylori J99] 21 4.0
ref|NP_222774.1| putative [Helicobacter pylori J99] 21 4.0
ref|NP_224110.1| putative [Helicobacter pylori J99] 21 5.2
ref|NP_224083.1| putative TYPE II DNA MODIFICATION ENZYME (... 21 5.2
ref|NP_223705.1| putative chemotaxis protein [Helicobacter ... 21 5.2
ref|NP_223329.1| glycerol-3-phosphate dehydrogenase [Helico... 21 5.2
ref|NP_223179.1| GLUTAMINE SYNTHETASE [Helicobacter pylori ... 21 5.2
ref|NP_224143.1| putative [Helicobacter pylori J99] 20 6.8
ref|NP_223684.1| METHIONYL-TRNA SYNTHETASE [Helicobacter py... 20 6.8
ref|NP_223569.1| putative IRON-REGULATED OUTER MEMBRANE PRO... 20 6.8
ref|NP_223181.1| 50S RIBOSOMAL PROTEIN L9 [Helicobacter pyl... 20 6.8
ref|NP_222920.1| GLUCOSE INHIBITED DIVISION PROTEIN A [Heli... 20 6.8
ref|NP_222886.1| putative [Helicobacter pylori J99] 20 6.8
ref|NP_222874.1| putative [Helicobacter pylori J99] 20 6.8
ref|NP_222868.1| putative lipopolysaccharide biosynthesis p... 20 6.8
ref|NP_224052.1| PEPTIDYL-PROLYL CIS-TRANS ISOMERASE [Helic... 20 8.8
ref|NP_223515.1| putative [Helicobacter pylori J99] 20 8.8
ref|NP_223384.1| putative [Helicobacter pylori J99] 20 8.8
ref|NP_223249.1| putative FLAGELLAR MOTOR SWITCH PROTEIN [... 20 8.8
ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATE... 20 8.8
ref|NP_223060.1| ASPARTATE CARBAMOYLTRANSFERASE CATALYTIC C... 20 8.8
ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [He... 20 8.8
ref|NP_222796.1| putative [Helicobacter pylori J99] 20 8.8
>ref|NP_223651.1| putative [Helicobacter pylori J99]
Length = 339
Score = 53.9 bits (128), Expect = 6e-10
Identities = 23/63 (36%), Positives = 43/63 (67%)
Query: 32 EDRKKAHTLYISEKVMNSVEEYLNEFGAFRENKSVFVQDAIIFYLEYKKKEMKQMLLDKA 91
ED+KK+ + S V+ + E+L EFG+F+E +S F+++A+I +L+++K +Q LL +
Sbjct: 49 EDKKKSFNIAFSPCVIKELNEFLLEFGSFKETRSTFIEEALIRHLKHRKNTQEQKLLKQL 108
Query: 92 SKL 94
+L
Sbjct: 109 ERL 111
Score = 25.0 bits (53), Expect = 0.27
Identities = 22/89 (24%), Positives = 42/89 (46%), Gaps = 7/89 (7%)
Query: 1 MEFKNTKKDRLSDLENRFENANKHETNKHEKEDRKKAHTLYISEK-VMNSVEEYLNEFGA 59
+EF + K+ R + +E KH N E++ K+ L EK +M ++ LNEF
Sbjct: 72 LEFGSFKETRSTFIEEALIRHLKHRKNTQEQKLLKQLERLQNKEKGIMKTMN--LNEFFT 129
Query: 60 FRENKSVFVQDAIIFYLEYKKKEMKQMLL 88
+ + +D + + + ++E+ Q L
Sbjct: 130 HK----IIYKDTPLKFKDTLEQEISQASL 154
Score = 21.9 bits (45), Expect = 2.3
Identities = 11/27 (40%), Positives = 16/27 (58%)
Query: 30 EKEDRKKAHTLYISEKVMNSVEEYLNE 56
EKEDR + L+++ + VEE NE
Sbjct: 220 EKEDRLFNYYLFLNGIKESDVEEVFNE 246
>ref|NP_223275.1| putative [Helicobacter pylori J99]
Length = 110
Score = 30.4 bits (67), Expect = 0.007
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 25 ETNKHEKEDRKKAHTLYISEKVMNSVEEYLNEFGAFRENKSVFVQDAIIFYL 76
E + ++R+ H L +S M V+EY+ E G N+S+ + A+ FY+
Sbjct: 57 EYEEKMSKERRIHHNLLLSPSFMAKVDEYMKEKGF--PNRSLLFEKALEFYM 106
>ref|NP_223140.1| OLIGOPEPTIDASE [Helicobacter pylori J99]
Length = 578
Score = 29.6 bits (65), Expect = 0.011
Identities = 25/88 (28%), Positives = 44/88 (49%), Gaps = 7/88 (7%)
Query: 2 EFKNTKKDRLSDLEN-RFENANKHETNKHEKEDRKKAHTLYISEKVMNSVEEYLNEFGAF 60
EF+N ++ L +L+ +F N KH N EK R A+ + K N+ E +F +
Sbjct: 31 EFENAYQNNLKNLDAAKFANTLKHYENLSEKISRAMAYAQLLFAK--NTKEA---KFYSQ 85
Query: 61 RENKSVFVQDAIIFY-LEYKKKEMKQML 87
E +Q ++F+ +E+K + K+ L
Sbjct: 86 CEMACANIQQHLLFFEIEFKNLDAKKQL 113
>ref|NP_223415.1| putative [Helicobacter pylori J99]
Length = 529
Score = 28.9 bits (63), Expect = 0.019
Identities = 20/84 (23%), Positives = 38/84 (44%), Gaps = 4/84 (4%)
Query: 7 KKDRLSDLENRFENANKHETNKHEKEDRKKAHTLYISEKVMNSVEEYLNEFGAFRENKSV 66
K+ L LE + + + E EKE ++ L +++ E + A +
Sbjct: 89 KEAHLKHLEAQHKEFVRDEKRYLEKEKKE----LEKERQILEQERENFKKQRAICKEAQA 144
Query: 67 FVQDAIIFYLEYKKKEMKQMLLDK 90
DA++ Y+ Y K E+K M+L++
Sbjct: 145 KALDAMLNYMAYTKDEIKSMILEQ 168
>ref|NP_223062.1| multi-drug resistance protein [Helicobacter pylori J99]
Length = 551
Score = 28.1 bits (61), Expect = 0.032
Identities = 14/29 (48%), Positives = 18/29 (61%)
Query: 31 KEDRKKAHTLYISEKVMNSVEEYLNEFGA 59
KE KKA L EK+ + +E L+EFGA
Sbjct: 443 KECLKKAQALDFVEKMPHGIESVLDEFGA 471
>ref|NP_224153.1| putative [Helicobacter pylori J99]
Length = 435
Score = 25.4 bits (54), Expect = 0.21
Identities = 15/41 (36%), Positives = 24/41 (57%), Gaps = 7/41 (17%)
Query: 31 KEDRKKAHTLYISEKVMNSVEEYLNEFGAFRENKSVFVQDA 71
K+ ++K+ LY+ E E L E AF+EN+ +V+DA
Sbjct: 272 KKKKQKSQFLYLEE-------ENLKEKIAFKENQINYVRDA 305
>ref|NP_224041.1| putative [Helicobacter pylori J99]
Length = 692
Score = 25.4 bits (54), Expect = 0.21
Identities = 24/86 (27%), Positives = 38/86 (43%), Gaps = 8/86 (9%)
Query: 3 FKNTKKDRLSDLENRFENANKHETNKHEKEDR--KKAHT----LYISEKVMNSVEEYL-- 54
F N KK + + E++N + H+KE R KK + + S+K N +E L
Sbjct: 32 FTNRKKRFRENAQKNAESSNHETLSHHKKEHRPNKKPNNHHKPKHASQKTRNYAKEELDN 91
Query: 55 NEFGAFRENKSVFVQDAIIFYLEYKK 80
N+ E V + + F+ E KK
Sbjct: 92 NKVEGVTEILHVNERGTLGFHKELKK 117
>ref|NP_223648.1| topoisomerase I [Helicobacter pylori J99]
Length = 686
Score = 24.3 bits (51), Expect = 0.47
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 1 MEFKNTKKDRLSDLENRFENANKHETNKHEKEDRKKAHTLYISEKVMNSVEEYLNE-FGA 59
+E K++ D +S+L ++ K E N E + + YI E ++ ++ L+E F
Sbjct: 548 VENKSSYVDFISNLNSKCPKIEKLERNDDEIKPSSEGQITYI-ENILRDLQLNLSEEFKN 606
Query: 60 FRENKSV--FVQDAIIFYLEYKKKEMKQ 85
++E+ V D I E+ KK K+
Sbjct: 607 YKEDNRVAKAFLDRYIKEHEFFKKNNKK 634
>ref|NP_223278.1| ASPARTYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 579
Score = 24.3 bits (51), Expect = 0.47
Identities = 12/42 (28%), Positives = 19/42 (44%)
Query: 18 FENANKHETNKHEKEDRKKAHTLYISEKVMNSVEEYLNEFGA 59
F N + +K K K S V+ +EE++ +FGA
Sbjct: 307 FSNIAQDPKDKRIKALNVKGADAVFSRSVLKELEEFVRQFGA 348
>ref|NP_222761.1| putative SUGAR NUCLEOTIDE BIOSYNTHESIS [Helicobacter pylori J99]
Length = 310
Score = 23.5 bits (49), Expect = 0.80
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 6/41 (14%)
Query: 49 SVEEYLNEFGAFRENKSVFVQDAIIFYLEYKKKEMKQMLLD 89
S+EEY + + K VFV+D+ K M+Q L+D
Sbjct: 244 SIEEYYEKVAQVLDYKGVFVKDS------SKPVGMQQKLMD 278
>ref|NP_224128.1| TYPE III RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 969
Score = 23.1 bits (48), Expect = 1.0
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 2 EFKNTKKDRL-SDLENRFENANKHETNKHEKEDRKKAHTLY 41
+ K+ KDRL R +N K E K KE+ KK TL+
Sbjct: 632 KLKDFLKDRLIGHFRVRNKNERKTEKIKINKENFKKFETLW 672
Score = 21.9 bits (45), Expect = 2.3
Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 6/73 (8%)
Query: 1 MEFKNTKKDRLSDLENRFENANKHETNKHEKEDRKKAHTL------YISEKVMNSVEEYL 54
+E K K + N NK ++ K + D A T YI EK+ + +L
Sbjct: 272 LELKEANKKQNEATINYTTLENKIQSVKVKTHDNLGALTHISALEDYIVEKITKTEIRFL 331
Query: 55 NEFGAFRENKSVF 67
N F + K F
Sbjct: 332 NGFNLLLDQKEPF 344
>ref|NP_222872.1| putative histidine kinase sensor protein [Helicobacter pylori J99]
Length = 442
Score = 23.1 bits (48), Expect = 1.0
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 4 KNTKKDRLSDLENRFEN 20
K+ +KD + DL N F+N
Sbjct: 177 KSKQKDEIGDLANEFDN 193
>ref|NP_224013.1| putative ENDONUCLEASE [Helicobacter pylori J99]
Length = 287
Score = 22.3 bits (46), Expect = 1.8
Identities = 11/38 (28%), Positives = 20/38 (51%), Gaps = 3/38 (7%)
Query: 10 RLSDLENRFENANKHETNKHEKEDR---KKAHTLYISE 44
R++++ +N N+H EKE R +K H + + E
Sbjct: 157 RMTNITPEAKNTNRHSVLLVEKEGRNLARKYHQVLVEE 194
>ref|NP_223610.1| putative [Helicobacter pylori J99]
Length = 267
Score = 22.3 bits (46), Expect = 1.8
Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 10/75 (13%)
Query: 8 KDRLSDLENRFENANKHETNKHEKEDRKKAHTLYISEKVMNSVEEYLNEFGAFRENKSVF 67
K+R + EN +K EK++ K L + + + NE +E + +
Sbjct: 101 KERSNQANREIENLQNEIKHKSEKQEVLKKEMLELEKLALELENLVENEVKNIKETQQII 160
Query: 68 VQDAIIFYLEYKKKE 82
+KKKE
Sbjct: 161 ----------FKKKE 165
>ref|NP_224160.1| TYPE II RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 326
Score = 21.9 bits (45), Expect = 2.3
Identities = 17/85 (20%), Positives = 35/85 (41%), Gaps = 6/85 (7%)
Query: 7 KKDRLSDLENRFENANKHETNKHEKEDRKKAHTLYISEKVMNSVEEYLNEFGAFRENKSV 66
+K++L +L + N N NK +K D + + + L + F NK
Sbjct: 136 QKEKLKELAQDYCNPNHFNGNKLDKRD------YHNWKNQAQQIFSLLEQSVFFETNKER 189
Query: 67 FVQDAIIFYLEYKKKEMKQMLLDKA 91
+ + + K++K+ + +KA
Sbjct: 190 LILKTLNEENKQNDKKLKRSIKEKA 214
>ref|NP_224130.1| ATP-DEPENDENT DNA HELICASE [Helicobacter pylori J99]
Length = 623
Score = 21.9 bits (45), Expect = 2.3
Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 10/80 (12%)
Query: 11 LSDLENRFENANKHETNKHEKEDRKKAHTLYISEKVMNSVEEYLNEFGAFRENKSVFVQD 70
++D ++RF +++ K K H+L S + KS FV+
Sbjct: 351 ITDEQHRFGTKQRYQLEKMASSKGNKPHSLQFSATPIPR---------TLALAKSAFVKT 401
Query: 71 AIIFYLEYKKKEMKQMLLDK 90
+I + Y KE++ ++L K
Sbjct: 402 TMIREIPY-PKEIETLVLHK 420
>ref|NP_224022.1| putative [Helicobacter pylori J99]
Length = 309
Score = 21.6 bits (44), Expect = 3.0
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 4 KNTKKDRLSDLENRFENANKHETNKHEKEDRKKAHTLYISEK 45
KN K + D + E NK+ + +R K Y+ K
Sbjct: 190 KNNAKASVKDFMSSKEFVNKYRYTPKQNTERAKKLQSYLESK 231
>ref|NP_223970.1| co-chaperone with DnaK [Helicobacter pylori J99]
Length = 369
Score = 21.6 bits (44), Expect = 3.0
Identities = 13/58 (22%), Positives = 26/58 (44%)
Query: 32 EDRKKAHTLYISEKVMNSVEEYLNEFGAFRENKSVFVQDAIIFYLEYKKKEMKQMLLD 89
+++K+A +K +N ++F F E+ F +DA F K++ + D
Sbjct: 58 DEKKRALYDRYGKKGLNQAGTSQSDFSDFFEDLGSFFEDAFGFGARGSKRQKSSIAPD 115
>ref|NP_223801.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 1237
Score = 21.6 bits (44), Expect = 3.0
Identities = 13/51 (25%), Positives = 20/51 (38%)
Query: 16 NRFENANKHETNKHEKEDRKKAHTLYISEKVMNSVEEYLNEFGAFRENKSV 66
N +N +E NK + T +KV N ++ N + NK V
Sbjct: 826 NGTSGSNCYEPNKQQNATTATTTTDSNLQKVYNDAQKIANIIASSGNNKGV 876
>ref|NP_223504.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
pylori J99]
Length = 528
Score = 21.6 bits (44), Expect = 3.0
Identities = 18/86 (20%), Positives = 34/86 (38%), Gaps = 7/86 (8%)
Query: 4 KNTKKDRLSDLENRFENANKHETNKHEKEDRKKAHTLYISEKVMNSVEEYLNEFGAFREN 63
KN K D ++ E + + NK + +R+K YI K + F A
Sbjct: 419 KNKKDDTTLFIDASKEFLKEGKKNKLKAHNREKILQTYIERKA-------IKHFSALANI 471
Query: 64 KSVFVQDAIIFYLEYKKKEMKQMLLD 89
+ + D + Y ++E + ++D
Sbjct: 472 EKIQENDYNLSVNRYVEQEDTKEIID 497
>ref|NP_223340.1| putative [Helicobacter pylori J99]
Length = 168
Score = 21.6 bits (44), Expect = 3.0
Identities = 10/17 (58%), Positives = 12/17 (69%)
Query: 5 NTKKDRLSDLENRFENA 21
N K+RLSDLE R+ A
Sbjct: 9 NGSKERLSDLEYRWAMA 25
>ref|NP_222776.1| putative [Helicobacter pylori J99]
Length = 522
Score = 21.6 bits (44), Expect = 3.0
Identities = 16/62 (25%), Positives = 25/62 (39%), Gaps = 5/62 (8%)
Query: 7 KKDRLSDLENRFENANKHETNKHEKEDRKKAHT----LYISEKVMNSVEEYLNEFGAFRE 62
+K + + FE K +H +D K A T L SE ++ L +G F+
Sbjct: 137 EKHQAEKIRESFERGLKKSLPRHVFDDEKTAKTFKVELRASEPCAYAISA-LKSYGFFKS 195
Query: 63 NK 64
K
Sbjct: 196 EK 197
>ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 1252
Score = 21.2 bits (43), Expect = 4.0
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 5 NTKKDRLSDLENRFENANKHETNK 28
N + D+L +L+N +N+ K + K
Sbjct: 482 NIECDKLKELKNYLKNSYKEDKRK 505
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 21.2 bits (43), Expect = 4.0
Identities = 14/64 (21%), Positives = 26/64 (39%), Gaps = 10/64 (15%)
Query: 27 NKHEKEDRKKAHTLYISEKVMNSVEEYLNEFGAFRENKSVFVQDAIIFYLEYKKKEMKQM 86
N HE E++ ++ +E L ++ E ++ E K+KE K +
Sbjct: 1803 NAHETENKNP----------LDKAQELLESLSSYDEKGNLIAPSKKELENELKEKEAKSV 1852
Query: 87 LLDK 90
LD+
Sbjct: 1853 NLDE 1856
Score = 20.8 bits (42), Expect = 5.2
Identities = 9/44 (20%), Positives = 22/44 (49%)
Query: 10 RLSDLENRFENANKHETNKHEKEDRKKAHTLYISEKVMNSVEEY 53
+L + + NK + + +K+ +TL+++E+ + EY
Sbjct: 2131 KLKEQNKQIAEQNKEKLDAIKKQFASNLNTLFVNEEEDYKLLEY 2174
>ref|NP_223441.1| PREPROTEIN TRANSLOCASE SUBUNIT [Helicobacter pylori J99]
Length = 865
Score = 21.2 bits (43), Expect = 4.0
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 43 SEKVMNSVEEYLNEFGAFRENKSV 66
+E+ + E YL+ F RE++SV
Sbjct: 789 NEQDSSDAERYLDNFSEEREHESV 812
>ref|NP_223104.1| putative [Helicobacter pylori J99]
Length = 429
Score = 21.2 bits (43), Expect = 4.0
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 59 AFRENKSVFVQDAIIFYLEYKKKEMKQMLL 88
AF SVF +F+L KK + Q+LL
Sbjct: 3 AFFSADSVFTLIFALFFLTSFKKPLTQVLL 32
>ref|NP_222774.1| putative [Helicobacter pylori J99]
Length = 327
Score = 21.2 bits (43), Expect = 4.0
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Query: 7 KKDRLSDLENRFENAN----KHETNKHEKEDRKKAHTLYISEKVMNSVEEYLNEFGAFRE 62
++D L R ++A+ K TN EKE+++ L E S+E N+ E
Sbjct: 182 ERDSLEQERARLQDAHGFLEKRCTNL-EKENQRLTDKLKQLESAQKSLENTNNQLRQALE 240
Query: 63 NKSVFVQDA 71
N +V + A
Sbjct: 241 NSNVQLAQA 249
>ref|NP_224110.1| putative [Helicobacter pylori J99]
Length = 306
Score = 20.8 bits (42), Expect = 5.2
Identities = 7/19 (36%), Positives = 12/19 (62%)
Query: 18 FENANKHETNKHEKEDRKK 36
F+N+ + E N H+K+ K
Sbjct: 262 FKNSIRGELNHHQKDSHSK 280
>ref|NP_224083.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 678
Score = 20.8 bits (42), Expect = 5.2
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 20 NANKHETNKHEKEDRKKAHTLYISEKV 46
N NK K E ED K+ Y+S +V
Sbjct: 641 NQNKPTDTKPELEDFKRTIADYLSYEV 667
>ref|NP_223705.1| putative chemotaxis protein [Helicobacter pylori J99]
Length = 312
Score = 20.8 bits (42), Expect = 5.2
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 4 KNTKKDRLSDLENRFENANKHETNKHEKEDRKK 36
+N K + DLE+ ++ +E K KED K
Sbjct: 145 ENDKTLLILDLESILDDLKLNEDAKSTKEDTPK 177
>ref|NP_223329.1| glycerol-3-phosphate dehydrogenase [Helicobacter pylori J99]
Length = 433
Score = 20.8 bits (42), Expect = 5.2
Identities = 10/24 (41%), Positives = 14/24 (57%)
Query: 36 KAHTLYISEKVMNSVEEYLNEFGA 59
K TL++ +K + E YLNE A
Sbjct: 231 KDTTLFLVKKNIEWFESYLNEVDA 254
>ref|NP_223179.1| GLUTAMINE SYNTHETASE [Helicobacter pylori J99]
Length = 481
Score = 20.8 bits (42), Expect = 5.2
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 30 EKEDRKKAHTLYISEKVMNSVEEYLNEFGAFRE 62
EK ++ HTL S + M + ++YL E F E
Sbjct: 416 EKGIKQMPHTLRRSLEEMLADKQYLKEGQVFSE 448
>ref|NP_224143.1| putative [Helicobacter pylori J99]
Length = 235
Score = 20.4 bits (41), Expect = 6.8
Identities = 8/34 (23%), Positives = 16/34 (46%)
Query: 24 HETNKHEKEDRKKAHTLYISEKVMNSVEEYLNEF 57
H K E+R K Y + + ++ Y+N++
Sbjct: 112 HVHQKTSLENRLKVLENYYRQVLREKIQTYINQY 145
>ref|NP_223684.1| METHIONYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 656
Score = 20.4 bits (41), Expect = 6.8
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 10/84 (11%)
Query: 11 LSDLENRFENANKHETNKHEKEDRKKAHTLYISEKVMNSVEEYLNEFGAFRENKSVFVQD 70
L D E F K E K EK ++ EK+ E + + K+ Q+
Sbjct: 499 LQDTEPLFSKIEKIE--KIEKIEK--------IEKIEKGEEALAEKAEKKEKEKAPPTQE 548
Query: 71 AIIFYLEYKKKEMKQMLLDKASKL 94
I ++KK E+K L+ +A ++
Sbjct: 549 NYISIEDFKKVEIKVGLIKEAQRI 572
>ref|NP_223569.1| putative IRON-REGULATED OUTER MEMBRANE PROTEIN [Helicobacter
pylori J99]
Length = 815
Score = 20.4 bits (41), Expect = 6.8
Identities = 7/28 (25%), Positives = 17/28 (60%)
Query: 13 DLENRFENANKHETNKHEKEDRKKAHTL 40
+LE + E + +T +++ +++ HTL
Sbjct: 23 ELEAKEEEKEEKKTERNKDKEKNAQHTL 50
>ref|NP_223181.1| 50S RIBOSOMAL PROTEIN L9 [Helicobacter pylori J99]
Length = 149
Score = 20.4 bits (41), Expect = 6.8
Identities = 12/42 (28%), Positives = 19/42 (44%)
Query: 53 YLNEFGAFRENKSVFVQDAIIFYLEYKKKEMKQMLLDKASKL 94
Y N F + + + I Y KK+ ++ L+KA KL
Sbjct: 25 YGNNFLIANQKAKLATNEVINKYKAEVKKKAEKEALEKAQKL 66
>ref|NP_222920.1| GLUCOSE INHIBITED DIVISION PROTEIN A [Helicobacter pylori J99]
Length = 621
Score = 20.4 bits (41), Expect = 6.8
Identities = 7/29 (24%), Positives = 16/29 (55%)
Query: 27 NKHEKEDRKKAHTLYISEKVMNSVEEYLN 55
+K + K+ H L++ + ++ E Y+N
Sbjct: 279 DKINRFSEKERHQLFLEPQTIHKSEYYIN 307
>ref|NP_222886.1| putative [Helicobacter pylori J99]
Length = 406
Score = 20.4 bits (41), Expect = 6.8
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 49 SVEEYLNEFGAFRENKSVFVQDA 71
+V EY G + ENKS + +A
Sbjct: 86 NVIEYFLSHGYYSENKSYYENNA 108
>ref|NP_222874.1| putative [Helicobacter pylori J99]
Length = 157
Score = 20.4 bits (41), Expect = 6.8
Identities = 12/51 (23%), Positives = 25/51 (48%)
Query: 4 KNTKKDRLSDLENRFENANKHETNKHEKEDRKKAHTLYISEKVMNSVEEYL 54
+NT + ++ +NA K ET + E++++A + E V + + L
Sbjct: 46 QNTPNSKNANTPLEPKNAAKIETQEKITEEKEEAKEIITEEIVQENPTQAL 96
>ref|NP_222868.1| putative lipopolysaccharide biosynthesis protein [Helicobacter
pylori J99]
Length = 377
Score = 20.4 bits (41), Expect = 6.8
Identities = 8/13 (61%), Positives = 9/13 (68%)
Query: 74 FYLEYKKKEMKQM 86
FY EY K +KQM
Sbjct: 318 FYAEYSVKFLKQM 330
>ref|NP_224052.1| PEPTIDYL-PROLYL CIS-TRANS ISOMERASE [Helicobacter pylori J99]
Length = 162
Score = 20.0 bits (40), Expect = 8.8
Identities = 8/24 (33%), Positives = 12/24 (49%)
Query: 15 ENRFENANKHETNKHEKEDRKKAH 38
E+R + H NKH++ AH
Sbjct: 82 EHRIKCEVAHNPNKHQRGSISMAH 105
>ref|NP_223515.1| putative [Helicobacter pylori J99]
Length = 541
Score = 20.0 bits (40), Expect = 8.8
Identities = 10/36 (27%), Positives = 17/36 (46%)
Query: 2 EFKNTKKDRLSDLENRFENANKHETNKHEKEDRKKA 37
E KNT + + + + E + KE++KKA
Sbjct: 470 ESKNTPISKENAAKKEAPKPSSKEEKRRLKEEKKKA 505
>ref|NP_223384.1| putative [Helicobacter pylori J99]
Length = 355
Score = 20.0 bits (40), Expect = 8.8
Identities = 10/24 (41%), Positives = 13/24 (53%)
Query: 55 NEFGAFRENKSVFVQDAIIFYLEY 78
NE+ +EN FV +FYL Y
Sbjct: 171 NEYLTMQENFMRFVFGKRLFYLLY 194
>ref|NP_223249.1| putative FLAGELLAR MOTOR SWITCH PROTEIN [Helicobacter pylori
J99]
Length = 123
Score = 20.0 bits (40), Expect = 8.8
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 21 ANKHETNKHEKEDRKKAHTLYISEKVMNSVEEYLN 55
ANK + + EKE K L +S + + +Y N
Sbjct: 6 ANKLKIAEKEKEKANKERELELSTYLEELICDYKN 40
>ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATED IMMUNODOMINANT ANTIGEN
[Helicobacter pylori J99]
Length = 1167
Score = 20.0 bits (40), Expect = 8.8
Identities = 10/38 (26%), Positives = 16/38 (41%)
Query: 7 KKDRLSDLENRFENANKHETNKHEKEDRKKAHTLYISE 44
+KD +LE++ N NK E + + L E
Sbjct: 629 EKDVAKNLESKSGNKNKMEAKSQANSQKDEIFALINKE 666
>ref|NP_223060.1| ASPARTATE CARBAMOYLTRANSFERASE CATALYTIC CHAIN [Helicobacter
pylori J99]
Length = 307
Score = 20.0 bits (40), Expect = 8.8
Identities = 10/34 (29%), Positives = 16/34 (46%)
Query: 46 VMNSVEEYLNEFGAFRENKSVFVQDAIIFYLEYK 79
++N Y N+F A +QD II L ++
Sbjct: 22 LLNKASVYANDFNAVSLETREKMQDKIIVALFFE 55
>ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [Helicobacter pylori J99]
Length = 681
Score = 20.0 bits (40), Expect = 8.8
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 15 ENRFENANKHETNKHEKEDRKK 36
EN+ + +NK N KE + K
Sbjct: 25 ENKAKESNKENKNNKAKEGKIK 46
>ref|NP_222796.1| putative [Helicobacter pylori J99]
Length = 590
Score = 20.0 bits (40), Expect = 8.8
Identities = 10/41 (24%), Positives = 18/41 (43%)
Query: 16 NRFENANKHETNKHEKEDRKKAHTLYISEKVMNSVEEYLNE 56
NR +A + N H +D HT + K ++++ E
Sbjct: 284 NRLNSALVNLDNSHMLKDNSLFHTKAMPTKSVDAITSQAKE 324
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.312 0.129 0.339
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 114,419
Number of Sequences: 1491
Number of extensions: 5296
Number of successful extensions: 53
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of query: 94
length of database: 494,079
effective HSP length: 70
effective length of query: 24
effective length of database: 389,709
effective search space: 9353016
effective search space used: 9353016
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.0 bits)
S2: 40 (20.0 bits)