BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645617|ref|NP_207793.1| hypothetical protein
[Helicobacter pylori 26695]
(394 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_224153.1| putative [Helicobacter pylori J99] 36 0.001
ref|NP_223194.1| cag island protein [Helicobacter pylori J99] 35 0.003
ref|NP_223788.1| putative [Helicobacter pylori J99] 31 0.048
ref|NP_224134.1| putative [Helicobacter pylori J99] 28 0.53
ref|NP_223151.1| putative TYPE II DNA MODIFICATION ENZYME (... 27 0.91
ref|NP_223796.1| putative SIGNAL RECOGNITION PARTICLE PROTE... 27 1.2
ref|NP_223617.1| putative [Helicobacter pylori J99] 27 1.2
ref|NP_223559.1| PHOSPHOTRANSACETYLASE [Helicobacter pylori... 27 1.2
ref|NP_223265.1| putative secretion/efflux abc transporter,... 27 1.2
ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATE... 27 1.2
ref|NP_222839.1| putative [Helicobacter pylori J99] 27 1.2
ref|NP_223770.1| putative [Helicobacter pylori J99] 26 1.5
ref|NP_224181.1| putative [Helicobacter pylori J99] 26 2.0
ref|NP_223520.1| putative [Helicobacter pylori J99] 26 2.0
ref|NP_223453.1| MOLYBDOPTERIN BIOSYNTHESIS PROTEIN [Helico... 26 2.0
ref|NP_223984.1| URACIL-DNA GLYCOSYLASE [Helicobacter pylor... 25 3.4
ref|NP_223645.1| putative [Helicobacter pylori J99] 25 3.4
ref|NP_223189.1| cag island protein [Helicobacter pylori J99] 25 3.4
ref|NP_222772.1| putative [Helicobacter pylori J99] 25 3.4
ref|NP_224015.1| putative TYPE III RESTRICTION ENZYME [Heli... 25 4.5
ref|NP_223838.1| DNA-DIRECTED RNA POLYMERASE, BETA SUBUNIT ... 25 4.5
ref|NP_223889.1| putative [Helicobacter pylori J99] 24 5.9
ref|NP_223664.1| putative [Helicobacter pylori J99] 24 5.9
ref|NP_223918.1| INDOLE-3-GLYCEROL PHOSPHATE SYNTHASE [Heli... 24 7.7
ref|NP_223808.1| putative THIOREDOXIN REDUCTASE [Helicobact... 24 7.7
ref|NP_223758.1| EXCINUCLEASE ABC SUBUNIT B [Helicobacter p... 24 7.7
ref|NP_223706.1| histidine kinase [Helicobacter pylori J99] 24 7.7
ref|NP_223502.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUB... 24 7.7
>ref|NP_224153.1| putative [Helicobacter pylori J99]
Length = 435
Score = 36.2 bits (82), Expect = 0.001
Identities = 57/270 (21%), Positives = 111/270 (41%), Gaps = 48/270 (17%)
Query: 92 EGLKDKCFKRNDAYLNTLLTP------IIQKQERRFSCSDFHNPELKEQCMDKT--NAYE 143
+G KD +K L + P I+ +++ F++ K + N YE
Sbjct: 95 KGAKDLAYKSETFILRLEMIPKKANLMILDQEKCVIEAFRFNDRVAKNDILGALPPNIYE 154
Query: 144 KQKDRQ--KRLINLVQLEAFEKEYAQYKPYIIPYFTKECVKNAPHLANKERLCQKEVHEK 201
Q++ K L++++ EK++ Y+ + + + +K A KERL KE EK
Sbjct: 155 HQEEDLDFKGLLDIL-----EKDFLSYQHKELEHKKNQIIKRLN--AQKERL--KEKLEK 205
Query: 202 FDDPYS---SSKELSVQSAISF----------------------CIKKVDAKLEKAALMN 236
+DP + +KEL Q+++ C+ ++D + A +N
Sbjct: 206 LEDPKTLQLEAKELQTQASLLLTYQHLINRRENRVILKDFEDKECMIEIDKSMPLNAFIN 265
Query: 237 GVYISPYKKSTHCQRTHLENKSLKE-IAL---NMNPKLEKQSPFIDADKMAMQSAGLLRK 292
+ KK Q +LE ++LKE IA +N + + M ++++ + R
Sbjct: 266 KKFTLSKKKKQKSQFLYLEEENLKEKIAFKENQINYVRDAAEESVLEMFMPVKNSKIKRP 325
Query: 293 NKGVLIAFATDICMERNEHKKEEFISLKDS 322
G + + D + +++KE L+D+
Sbjct: 326 MNGYEVLYYKDFKIGLGKNQKENIKLLQDA 355
>ref|NP_223194.1| cag island protein [Helicobacter pylori J99]
Length = 1819
Score = 35.4 bits (80), Expect = 0.003
Identities = 70/340 (20%), Positives = 140/340 (40%), Gaps = 29/340 (8%)
Query: 35 DHLTKAKNNP-KYDCQKEMWSFPKKY-DGINQCLKAQEELIEPIITKKIDQYQCDDF-TN 91
D ++KAKN + +C+K + +K + + +KA ++ + +K ++ +C+ T
Sbjct: 802 DCVSKAKNEAERKECEKLLTPEARKLLEEAKESVKAYKDCVSRARNEK-EKQECEKLLTP 860
Query: 92 EGLK--DKCFKRNDAYLNTLLTPIIQKQERRFSCSDFHNPELKEQCMDKTNAYEKQKDRQ 149
E K ++ K AYL+ + + + R C PE ++ + + + KD
Sbjct: 861 EARKLLEESKKSVKAYLDCVSKA--KNEAERKECEKLLTPEARKLLEEAKESVKAYKDCV 918
Query: 150 KRLINLVQLEAFEKEYAQYKPYIIPYFTKECVKNAPHLANKERLCQKEVHEKFDDPYSSS 209
R N + + EK ++ +C+KNA A K+R C K++ + +
Sbjct: 919 SRARNEKEKQECEKLLTPEAKKLLENQALDCLKNAKTEAEKKR-CVKDLPKDLQKKVLAK 977
Query: 210 KELSVQSAISFCIKKVDAKLEKAALMNGVYISPYKKSTHCQRTHLENKSLKEIALNMNPK 269
+ + V C+ K + E+ ++P + + K+ K+ +
Sbjct: 978 ESVRVYLD---CVSKAKNEAERKECEK--LLTPEARKL-LEEAKESVKAYKDCVSRARNE 1031
Query: 270 LEKQSPFIDADKMAMQSAGLL--RKNKGVLIAFATDICMERNEHKKEEFISL------KD 321
EKQ + +K+ A L ++ K + A+ + RNE +K+E L K
Sbjct: 1032 KEKQ----ECEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKL 1087
Query: 322 SCTQSQAKIYNNKERFDK--FIQDYQKDLKTCLLDTSNTK 359
Q+ + N K +K ++D KDL+ +L + K
Sbjct: 1088 LENQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVK 1127
Score = 27.3 bits (59), Expect = 0.70
Identities = 76/374 (20%), Positives = 127/374 (33%), Gaps = 51/374 (13%)
Query: 29 DKQILNDHLTKAKNNPKYDCQKEMWSFPKKYDGINQCLKAQEELIEPIITKKIDQYQCDD 88
DK L N Y+ ++ K D + + L+A + I+ T++ ++ +C D
Sbjct: 320 DKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEE-ERIKCLD 378
Query: 89 FT-NEGLKDKCFKRNDAYLNTLLTPIIQKQERRFSCSDFHN-PELKEQCMDKTNAYEKQK 146
+E LK + + + E R C N PE++E+ K +K+
Sbjct: 379 LIKDENLKKSLLNQQKVQVALDCLKNAKTDEERKECLKLINDPEIREK-FRKELELQKEL 437
Query: 147 DRQKRLINLVQLEAFEKEYAQ-----------------YKPYIIPYFTKECVKNAPHLAN 189
K I + EA + E + K KEC+KN P
Sbjct: 438 QEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERKECLKNIPQDLQ 497
Query: 190 KERLCQKEVHEKFDDPYSSSKELSVQSAISFCIKKVDAKLEKAALMNGVYISPYKKSTHC 249
KE L V D + E Q + LE AL C
Sbjct: 498 KELLADMSVKAYKDCVSRARNEKEKQECEKLLTPEAKKLLENQAL-------------DC 544
Query: 250 QRTHLENKSLKEIALNMNPKLEKQSPFIDADKMA----MQSAGLLRKNKGVLIAFATDIC 305
+ ++ KE N+ PK + QS + + + S K T
Sbjct: 545 LKNAKTDEERKECLKNL-PK-DLQSDILAKESLKAYKDCASQAKTEAEKKECEKLLTPEA 602
Query: 306 MERNEHKKEEFISLKDSCTQSQAKIYNNKERFDKF--------IQDYQKDLKTCLLDTSN 357
+ E + +E + C SQAK K+ +K +++ +K ++ L S
Sbjct: 603 KKLLEEEAKESVKAYLDCV-SQAKTEAEKKECEKLLTPEAKKKLEEAKKSVRAYLDCVSK 661
Query: 358 TKEEVEQNFSQCQK 371
K E E+ +C+K
Sbjct: 662 AKNEAER--KECEK 673
>ref|NP_223788.1| putative [Helicobacter pylori J99]
Length = 433
Score = 31.2 bits (69), Expect = 0.048
Identities = 54/258 (20%), Positives = 105/258 (39%), Gaps = 39/258 (15%)
Query: 134 QCMDKTNAYE---KQKDRQKRLINLVQLEAFEKEY----AQYKPYIIPYFTKECVKNAPH 186
+C + N E KQ + + + L Q +AFEKE AQY+ Y KE
Sbjct: 13 KCQEPINVSEALYKQIESENQSRFLAQQKAFEKEVNEKRAQYQSYFKNLEQKE------- 65
Query: 187 LANKERLCQKEVHEKFDDPYSSSKELSVQSAISFCIKKV--DAKLEKAALMNGVYISPYK 244
A KER KE +FD+ + L++Q + I++ +A LE+ + + +
Sbjct: 66 EALKER--AKEQQAQFDEAVKQASALALQDERAKIIEEARKNAFLEQQKGLELLQKELDE 123
Query: 245 KSTHCQRTHLENKSLKEIALNMNPKLEKQSPFIDADKMAMQSAGLLRKNKGVLIAFATDI 304
KS Q H + ++ + N E +S ++ + L + K
Sbjct: 124 KSKQVQELHQKEAEIERLKRENN---EAESRLKAENEKKLNEKLELEREK---------- 170
Query: 305 CMERNEHKKEE--FISLKDSCTQSQAKIYNNKERFDKFIQDYQKDLKTCLLDTSNTKEEV 362
+E+ H+K E F ++ + ++ N + + + Q +Q +++ ++ E +
Sbjct: 171 -IEKALHEKNELKFKQQEEQLEMLRNELKNAQRKAELSSQQFQGEVQELAIE-----EFL 224
Query: 363 EQNFSQCQKEQLRDDNKG 380
Q F E+++ +G
Sbjct: 225 RQKFPLDSVEEIKKGQRG 242
>ref|NP_224134.1| putative [Helicobacter pylori J99]
Length = 479
Score = 27.7 bits (60), Expect = 0.53
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 21/116 (18%)
Query: 116 KQERRFSCSDFHNPELKEQCMDKTNAYEKQKDRQKRLINLVQ------LEAFEKEYAQYK 169
KQ+ + + + EL K+ + + ++ + V+ L KE ++YK
Sbjct: 370 KQDDQVEPTFYETSELAYSSTRKSEITRNELNLNEKFMEFVEVYEGHYLNDIIKESSEYK 429
Query: 170 PYIIPYFTKECVKNAPHLANKERLCQK-EVHEKFDDPYSSSKELSVQSAISFCIKK 224
E VKN H+ KE +C E+ E+ P + S LS++++ C+KK
Sbjct: 430 ---------EWVKN--HVRFKEGVCMALEIEEQ---PRAKSTPLSIENSRVVCVKK 471
>ref|NP_223151.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 309
Score = 26.9 bits (58), Expect = 0.91
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 146 KDRQKRLINLVQLEAFEKEYAQYKPYIIPYFTKECV 181
KD+Q NL LE ++ Y+ K + ++ KECV
Sbjct: 99 KDKQALYDNLFSLEPNQETYSIIKQELKAHYKKECV 134
>ref|NP_223796.1| putative SIGNAL RECOGNITION PARTICLE PROTEIN [Helicobacter pylori
J99]
Length = 448
Score = 26.6 bits (57), Expect = 1.2
Identities = 19/45 (42%), Positives = 27/45 (59%), Gaps = 4/45 (8%)
Query: 253 HLENKSLKEIALNMNPKLEKQSPFIDADKMAMQSAGLLRKNKGVL 297
H ENKS+KEIA N K K++ F D + + SAG L +K ++
Sbjct: 154 HEENKSVKEIA-NNALKRAKEAQF---DVLIVDSAGRLAIDKELM 194
>ref|NP_223617.1| putative [Helicobacter pylori J99]
Length = 500
Score = 26.6 bits (57), Expect = 1.2
Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Query: 303 DICMERNEHKKEEFISLKDSCTQSQAKIYNNKERFDKFIQDYQKDLKTCLLDTSNTKEEV 362
DI NEH+K E + + + K K+ ++ +++ +L + + EE+
Sbjct: 113 DIAELENEHEKYE--REFNRIVEEEVKKQKEKQSLSNRAKEGIRNVGNKMLGRNKSDEEI 170
Query: 363 EQNFSQCQKEQLRDDNK 379
E+ + K +L D K
Sbjct: 171 EKRAERIAKNELEKDTK 187
>ref|NP_223559.1| PHOSPHOTRANSACETYLASE [Helicobacter pylori J99]
Length = 519
Score = 26.6 bits (57), Expect = 1.2
Identities = 43/176 (24%), Positives = 61/176 (34%), Gaps = 37/176 (21%)
Query: 51 EMWSFPKKYDGINQCLKAQEELIEPIITKKIDQYQC--DDFTNEGLKDKCFKRNDAYLNT 108
E+ S K + AQEEL+ I K+ D+ Q D N G K F LNT
Sbjct: 55 EVHSAIDKQKALELVSTAQEELLFETILKRYDELQSTHDFVINLGYAPKFFLNALLDLNT 114
Query: 109 LL-----TPI-----------------IQKQERRFSCSDFHNPEL-----------KEQC 135
+L P+ I K+E F+ F L K+QC
Sbjct: 115 ILAKHLNAPVVAVAQTSLDHLKAMHSHILKKEAPFAIGLFVGETLEKPHFLSASLCKQQC 174
Query: 136 MDKTNAYEKQKDRQKRLIN--LVQLEAFEKEYAQYKPYIIPYFTKECVKNAPHLAN 189
+ +A E + +I Q +K Q K ++P E + A H N
Sbjct: 175 ELEASAIENLLQTKSEIITPLAFQRSLEKKAKKQIKKVVLPESEDERILKAAHRLN 230
>ref|NP_223265.1| putative secretion/efflux abc transporter, ATP-binding protein
[Helicobacter pylori J99]
Length = 589
Score = 26.6 bits (57), Expect = 1.2
Identities = 23/107 (21%), Positives = 43/107 (39%), Gaps = 12/107 (11%)
Query: 150 KRLINLVQLEAFEKEYAQYKPYIIPYFTKECVKNAPHLANKERLCQKEVHEKFDDPYSSS 209
+R+I L+ L + Y P+I+ + T C+ + H+A K H D
Sbjct: 151 QRIIGLISLFGILFSISIYLPFIMIFATVPCILISNHIAKK--------HSASIDKLQDQ 202
Query: 210 KELSVQSAISFCIKKVDAKLEKAALMNGVYISPYKKSTHCQRTHLEN 256
KE S ++ +D + K L+ ++ + K + +L N
Sbjct: 203 KE----SMQNYLYSGLDNQKNKDNLLFNFMLNFHHKFIETKELYLNN 245
>ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATED IMMUNODOMINANT ANTIGEN
[Helicobacter pylori J99]
Length = 1167
Score = 26.6 bits (57), Expect = 1.2
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 317 ISLKDSCTQSQAKIYN----NKERFDKFIQDYQKDLKTCL 352
+ + Q+ AK+ N KE+F I+D+QKD K L
Sbjct: 401 VDFMEFLAQNNAKLDNLSKKEKEKFQNEIEDFQKDSKAYL 440
>ref|NP_222839.1| putative [Helicobacter pylori J99]
Length = 143
Score = 26.6 bits (57), Expect = 1.2
Identities = 17/58 (29%), Positives = 32/58 (54%), Gaps = 6/58 (10%)
Query: 114 IQKQERRFSCSDFHNPELKEQCMDKTNAYEKQKDRQKRLINLVQLEAFEKEYAQYKPY 171
++++ER+ +DF ++ MDK A Q+DR KR ++++ A +K+ K Y
Sbjct: 58 MKEEERQKYKADF------KKAMDKNLASLSQEDRNKRKKEILEVIANKKKTMTMKEY 109
>ref|NP_223770.1| putative [Helicobacter pylori J99]
Length = 331
Score = 26.2 bits (56), Expect = 1.5
Identities = 43/181 (23%), Positives = 70/181 (37%), Gaps = 28/181 (15%)
Query: 58 KYDGINQCLKAQEELIEPIITKKIDQYQCDDFTNEGLKDKCFKRNDAYLNTLLTPIIQKQ 117
K +N + +QEE + + + Q ++ L+D RN+ + N + KQ
Sbjct: 74 KIKDLNNAILSQEESLRALKASQEVQANTLKQQSQTLEDL---RNEIHANQQAIQQLDKQ 130
Query: 118 ERRFSCSDFHNPELKEQCMDKTNAYEKQKDRQKRLINLVQLEAFEKEYAQYKPYIIPYFT 177
N E+ E + Q I L+Q E+E KP +
Sbjct: 131 ----------NKEMSELLTKLSQDLVSQ-------IALIQKALKEQEEKAEKPL---KSS 170
Query: 178 KECVKNAPHLA----NKERLCQKEVHEKFDDPYSSSKELSVQSAISFCIKKVDAKLEKAA 233
KN P A N+E+ Q++ +FD S KE+ Q A+SF K A+ ++
Sbjct: 171 TPANKNPPLKAETPKNQEKKTQEKAKVEFDKDLSKQKEI-FQEALSFFRNKSYAEAKERL 229
Query: 234 L 234
L
Sbjct: 230 L 230
>ref|NP_224181.1| putative [Helicobacter pylori J99]
Length = 367
Score = 25.8 bits (55), Expect = 2.0
Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 11/100 (11%)
Query: 95 KDKCFKRNDAYLNTLLTPIIQKQERRFSCSDFHNPELKEQCMDKTNAYEKQKDRQKRLI- 153
KD +DA++ L+ I K + +FS +NP L M T +E+Q LI
Sbjct: 117 KDINLNSDDAHMTNLINTTITKPQLQFS----YNPSLSPMTM--TYEFERQ---NLGLIH 167
Query: 154 -NLVQLEAFEKEYAQYKPYIIPYFTKECVKNAPHLANKER 192
NL ++ KE A + P + LA+KE+
Sbjct: 168 SNLDKIAQTYKENAMFIPIELSIVNSLKALENLQLASKEK 207
>ref|NP_223520.1| putative [Helicobacter pylori J99]
Length = 153
Score = 25.8 bits (55), Expect = 2.0
Identities = 18/58 (31%), Positives = 29/58 (49%), Gaps = 3/58 (5%)
Query: 289 LLRKNKGVLIAFATDICMERNEHKKEEFISLKDSCTQSQAKIYNNK-ERFDKFIQDYQ 345
+LRK K VL +IC ++ E KE F S K++ + I+ E + + +D Q
Sbjct: 32 ILRKKKSVLKGLKQEICQKKLE--KENFRSNKETQNTEEDVIFPKALEEVEVYAKDNQ 87
>ref|NP_223453.1| MOLYBDOPTERIN BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 176
Score = 25.8 bits (55), Expect = 2.0
Identities = 15/45 (33%), Positives = 19/45 (41%), Gaps = 13/45 (28%)
Query: 69 QEELIEPIITKKIDQYQCD-------------DFTNEGLKDKCFK 100
+ +LIE + K D+YQCD D T E K C K
Sbjct: 50 ERDLIEKSLIKMCDEYQCDLVVTTGGTGPALRDITPEATKKVCQK 94
>ref|NP_223984.1| URACIL-DNA GLYCOSYLASE [Helicobacter pylori J99]
Length = 233
Score = 25.0 bits (53), Expect = 3.4
Identities = 23/108 (21%), Positives = 46/108 (42%), Gaps = 11/108 (10%)
Query: 197 EVHEKFDDPYSSSKELSVQSAISFCIKKVDAKLEKAALMNGVYISPYKKSTHCQRTHLEN 256
E+ +++ + S K + +S+ FC + ++ G PY T+LEN
Sbjct: 28 EIEKRYLEALKSPKTIFPKSSNLFCAFNLTPPYAVKIILLGQ--DPYHS------TYLEN 79
Query: 257 KSLKEIALNMNPKLEKQSPFIDADKMAMQSAGLLRKNKGVLIAFATDI 304
+ +A+ ++ +EK +P + K + L N GV + D+
Sbjct: 80 EQELPVAMGLSFSVEKNAPIPPSLKNIFKE---LHANLGVPVPCCGDL 124
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 25.0 bits (53), Expect = 3.4
Identities = 23/83 (27%), Positives = 40/83 (47%), Gaps = 6/83 (7%)
Query: 293 NKGVLIAFATDICMERNEHKKEEFISLKDSCTQSQAKIYNNKERFDKFI-QDYQK--DLK 349
NK + + +A ++ N+ KKE FI+ ++ ++ K KE F +I +DY + L+
Sbjct: 1254 NKDLSVKYAQ---VDPNDPKKEIFITDEEQSNLARQKAEELKEAFKDWIYKDYSRRTHLE 1310
Query: 350 TCLLDTSNTKEEVEQNFSQCQKE 372
DT N + SQ + E
Sbjct: 1311 QIYNDTFNNSVLKTYDGSQLELE 1333
>ref|NP_223189.1| cag island protein [Helicobacter pylori J99]
Length = 481
Score = 25.0 bits (53), Expect = 3.4
Identities = 11/35 (31%), Positives = 21/35 (59%)
Query: 310 EHKKEEFISLKDSCTQSQAKIYNNKERFDKFIQDY 344
++KK +++S+ D+ TQ+ IY+ DK D+
Sbjct: 60 DNKKPQYVSVDDTKTQALFDIYDTLNVNDKSFGDW 94
>ref|NP_222772.1| putative [Helicobacter pylori J99]
Length = 220
Score = 25.0 bits (53), Expect = 3.4
Identities = 21/65 (32%), Positives = 30/65 (45%), Gaps = 10/65 (15%)
Query: 337 FDKFIQDYQKDLKTCLLDTS---------NTKEEVEQNFS-QCQKEQLRDDNKGLGFTLE 386
F K D Q++ K L T+ T E VE+N + +KE+L +NK L E
Sbjct: 2 FGKSSNDTQENPKDALKSTNFHEKHTKPTETTELVEENKALTTEKERLERENKNLTADKE 61
Query: 387 ELVKK 391
L K+
Sbjct: 62 NLTKE 66
>ref|NP_224015.1| putative TYPE III RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 779
Score = 24.6 bits (52), Expect = 4.5
Identities = 37/159 (23%), Positives = 65/159 (40%), Gaps = 29/159 (18%)
Query: 146 KDRQKRLINLVQLEAFEKEYAQYKPYIIPYFTKECVKNAPHLANKERLCQKEVHEKFDDP 205
KD++K L N+ + E A+ K +P F +E+ + K D
Sbjct: 463 KDKKKNLFNMDYSDPVE---AKLKSLHVPLFA---------FGVREKQVDFKEENKGDRT 510
Query: 206 YSSSKELSVQSAISFCIKKVDAK----------LEKAALMNGV-----YISPYKKSTHCQ 250
Y L + I++ +K ++ K +K A N V YISP K + H
Sbjct: 511 YYMPHTLD-KIPINYFLKALNLKNLDFKTLKKAFKKHAFNNKVGFIEQYISPLKTNFHKN 569
Query: 251 RTHLENKSLKEIALNMNPKLEKQSPFIDADKMAMQSAGL 289
+ +NK L ++A+ + L K + + DK ++ + L
Sbjct: 570 QKFDDNKILLQLAVYIIENL-KDTLLKEQDKPSVSTLEL 607
>ref|NP_223838.1| DNA-DIRECTED RNA POLYMERASE, BETA SUBUNIT [Helicobacter pylori J99]
Length = 2890
Score = 24.6 bits (52), Expect = 4.5
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Query: 368 QCQKEQLRDDNKGLGFTLEELVKKYAK 394
Q KE++ N+ FTL LVKKY+K
Sbjct: 1010 QIPKEEIASINR---FTLASLVKKYSK 1033
>ref|NP_223889.1| putative [Helicobacter pylori J99]
Length = 219
Score = 24.3 bits (51), Expect = 5.9
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 353 LDTSNTKEEVEQNFSQCQKEQLRDDNK 379
LDT+ K+E++Q Q K++++ + K
Sbjct: 85 LDTATQKQEIKQEIKQEIKQEIKQEIK 111
>ref|NP_223664.1| putative [Helicobacter pylori J99]
Length = 466
Score = 24.3 bits (51), Expect = 5.9
Identities = 31/117 (26%), Positives = 48/117 (40%), Gaps = 14/117 (11%)
Query: 233 ALMNGVYISPYKKSTHCQRTHLENKSLK-EIALNMNPKLEKQSPFIDADKMAMQSAGLLR 291
AL+N Y T ++ E + LK +IA N+ K+ KQ D+ Q L
Sbjct: 234 ALLNNDY-------TAYEKLRAEKEELKRQIASNVYAKV-KQLVVASQDRAFSQMDNEL- 284
Query: 292 KNKGVLIAFATDICMERNEHKKEEFISLKDSCTQSQAKIYNNKERFDKFIQDYQKDL 348
GV D +++ KKE K C + + K +FD+ DY +D+
Sbjct: 285 ---GVKTFGFNDENVKKGYCKKENRNG-KSECIPNMLNVNRLKAQFDELNLDYSRDI 337
>ref|NP_223918.1| INDOLE-3-GLYCEROL PHOSPHATE SYNTHASE [Helicobacter pylori J99]
Length = 452
Score = 23.9 bits (50), Expect = 7.7
Identities = 13/28 (46%), Positives = 18/28 (63%)
Query: 270 LEKQSPFIDADKMAMQSAGLLRKNKGVL 297
LEK++ FI K A S GL+RK+ +L
Sbjct: 41 LEKKTSFILEYKKASPSKGLIRKDFDLL 68
>ref|NP_223808.1| putative THIOREDOXIN REDUCTASE [Helicobacter pylori J99]
Length = 324
Score = 23.9 bits (50), Expect = 7.7
Identities = 14/44 (31%), Positives = 21/44 (46%)
Query: 329 KIYNNKERFDKFIQDYQKDLKTCLLDTSNTKEEVEQNFSQCQKE 372
K Y +R DK + +LK + + KEE +NF+ KE
Sbjct: 47 KFYKAGKRIDKDYKKQVVELKGHIPFKDSFKEETLENFTNLLKE 90
>ref|NP_223758.1| EXCINUCLEASE ABC SUBUNIT B [Helicobacter pylori J99]
Length = 658
Score = 23.9 bits (50), Expect = 7.7
Identities = 12/53 (22%), Positives = 24/53 (44%)
Query: 43 NPKYDCQKEMWSFPKKYDGINQCLKAQEELIEPIITKKIDQYQCDDFTNEGLK 95
+PK++ + +D I + E ++ +TKK+ + C + GLK
Sbjct: 422 DPKFEVRDSDKQVQDLFDEIKSVVARGERVLITTLTKKMAEELCKYYAEWGLK 474
>ref|NP_223706.1| histidine kinase [Helicobacter pylori J99]
Length = 815
Score = 23.9 bits (50), Expect = 7.7
Identities = 16/77 (20%), Positives = 34/77 (43%)
Query: 303 DICMERNEHKKEEFISLKDSCTQSQAKIYNNKERFDKFIQDYQKDLKTCLLDTSNTKEEV 362
D+ + + K ++++D+ + + N E K +Q +TS TKE
Sbjct: 88 DVVLRSIDLMKTLLVTIRDTGSDTNNGKENEIEEVVKKLQAITSQNLEGAKETSGTKEAP 147
Query: 363 EQNFSQCQKEQLRDDNK 379
E+ + KE+ +++ K
Sbjct: 148 EKEVKKENKEKAKEEVK 164
>ref|NP_223502.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUBUNIT) [Helicobacter
pylori J99]
Length = 875
Score = 23.9 bits (50), Expect = 7.7
Identities = 17/69 (24%), Positives = 27/69 (38%), Gaps = 8/69 (11%)
Query: 314 EEFISLKDSCTQSQAKIYNNKERFDKF--------IQDYQKDLKTCLLDTSNTKEEVEQN 365
+E+ + C S K++ + F IQ K +K L + EEV
Sbjct: 223 KEYDKFQKDCANSNTSTKILKQQLEDFNAKIIITTIQKLDKFVKAHLKGHAIFNEEVVMI 282
Query: 366 FSQCQKEQL 374
F +C + QL
Sbjct: 283 FDECHRSQL 291
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.317 0.133 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 454,699
Number of Sequences: 1491
Number of extensions: 22966
Number of successful extensions: 108
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 94
Number of HSP's gapped (non-prelim): 31
length of query: 394
length of database: 494,079
effective HSP length: 80
effective length of query: 314
effective length of database: 374,799
effective search space: 117686886
effective search space used: 117686886
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)