BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645618|ref|NP_207794.1| hypothetical protein
[Helicobacter pylori 26695]
(370 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_224152.1| DNA REPAIR PROTEIN(RECOMBINATION PROTEIN N... 45 3e-06
ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SU... 35 0.003
ref|NP_223194.1| cag island protein [Helicobacter pylori J99] 35 0.004
ref|NP_223025.1| putative [Helicobacter pylori J99] 35 0.004
ref|NP_223415.1| putative [Helicobacter pylori J99] 34 0.007
ref|NP_223405.1| putative [Helicobacter pylori J99] 32 0.020
ref|NP_223383.1| putative [Helicobacter pylori J99] 32 0.034
ref|NP_222972.1| DIHYDROOROTASE [Helicobacter pylori J99] 30 0.076
ref|NP_223180.1| putative [Helicobacter pylori J99] 30 0.100
ref|NP_223639.1| putative [Helicobacter pylori J99] 30 0.13
ref|NP_222797.1| methyl-accepting chemotaxis protein (MCP) ... 30 0.13
ref|NP_223629.1| putative [Helicobacter pylori J99] 29 0.22
ref|NP_223498.1| putative [Helicobacter pylori J99] 29 0.22
ref|NP_223759.1| putative [Helicobacter pylori J99] 28 0.29
ref|NP_223990.1| putative [Helicobacter pylori J99] 28 0.38
ref|NP_223561.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [H... 28 0.38
ref|NP_223516.1| putative [Helicobacter pylori J99] 28 0.38
ref|NP_224170.1| LEUCYL-TRNA SYNTHETASE [Helicobacter pylor... 28 0.50
ref|NP_223427.1| putative PROBABLE N-ACETYLMURAMOYL-L-ALANI... 28 0.50
ref|NP_223176.1| putative [Helicobacter pylori J99] 27 0.65
ref|NP_223108.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [H... 27 0.65
ref|NP_222772.1| putative [Helicobacter pylori J99] 27 0.65
ref|NP_224071.1| DNA POLYMERASE III, ALPHA CHAIN [Helicobac... 27 0.84
ref|NP_223970.1| co-chaperone with DnaK [Helicobacter pylor... 27 0.84
ref|NP_223770.1| putative [Helicobacter pylori J99] 27 0.84
ref|NP_223651.1| putative [Helicobacter pylori J99] 27 0.84
ref|NP_223388.1| putative [Helicobacter pylori J99] 27 0.84
ref|NP_223170.1| DNA POLYMERASE III, BETA CHAIN [Helicobact... 27 0.84
ref|NP_223618.1| putative [Helicobacter pylori J99] 27 1.1
ref|NP_223274.1| putative vacuolating cytotoxin (VacA) para... 27 1.1
ref|NP_223135.1| putative [Helicobacter pylori J99] 27 1.1
ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99] 27 1.1
ref|NP_222774.1| putative [Helicobacter pylori J99] 27 1.1
ref|NP_223971.1| putative [Helicobacter pylori J99] 26 1.4
ref|NP_223801.1| putative Outer membrane protein [Helicobac... 26 1.4
ref|NP_223641.1| putative [Helicobacter pylori J99] 26 1.4
ref|NP_222816.1| methyl-accepting chemotaxis protein (MCP) ... 26 1.4
ref|NP_222768.1| putative TYPE II restriction enzyme [Helic... 26 1.4
ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter py... 26 1.9
ref|NP_223645.1| putative [Helicobacter pylori J99] 26 1.9
ref|NP_223235.1| AMINOPEPTIDASE [Helicobacter pylori J99] 26 1.9
ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helico... 26 1.9
ref|NP_224114.1| putative component of cation transport for... 25 2.5
ref|NP_223400.1| putative [Helicobacter pylori J99] 25 2.5
ref|NP_223384.1| putative [Helicobacter pylori J99] 25 2.5
ref|NP_223331.1| putative [Helicobacter pylori J99] 25 2.5
ref|NP_222912.1| putative [Helicobacter pylori J99] 25 2.5
ref|NP_222796.1| putative [Helicobacter pylori J99] 25 2.5
ref|NP_224128.1| TYPE III RESTRICTION ENZYME [Helicobacter ... 25 3.2
ref|NP_223560.1| putative [Helicobacter pylori J99] 25 3.2
ref|NP_223449.1| TRIGGER FACTOR [Helicobacter pylori J99] 25 3.2
ref|NP_223438.1| putative [Helicobacter pylori J99] 25 3.2
ref|NP_223699.1| 30S RIBOSOMAL PROTEIN S1 [Helicobacter pyl... 25 4.2
ref|NP_223662.1| putative [Helicobacter pylori J99] 25 4.2
ref|NP_223502.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUB... 25 4.2
ref|NP_223264.1| methyl-accepting chemotaxis protein (MCP) ... 25 4.2
ref|NP_224140.1| putative TYPE I RESTRICTION ENZYME (SPECIF... 24 5.5
ref|NP_224083.1| putative TYPE II DNA MODIFICATION ENZYME (... 24 5.5
ref|NP_223913.1| FLAGELLAR FUNCTIONAL PROTEIN [Helicobacter... 24 5.5
ref|NP_223820.1| putative Outer membrane function [Helicoba... 24 5.5
ref|NP_223799.1| UDP-N-ACETYLGLUCOSAMINE--N-ACETYLMURAMYL-(... 24 5.5
ref|NP_223797.1| VALYL-TRNA SYNTHETASE [Helicobacter pylori... 24 5.5
ref|NP_223781.1| ATP synthase F0, subunit b [Helicobacter p... 24 5.5
ref|NP_223063.1| putative [Helicobacter pylori J99] 24 5.5
ref|NP_222814.1| putative [Helicobacter pylori J99] 24 5.5
ref|NP_224045.1| FORMYLTETRAHYDROFOLATE HYDROLASE [Helicoba... 24 7.2
ref|NP_223965.1| putative [Helicobacter pylori J99] 24 7.2
ref|NP_223691.1| putative S/N-oxide reductase [Helicobacter... 24 7.2
ref|NP_223293.1| Hydrogenase, large subunit [Helicobacter p... 24 7.2
ref|NP_223252.1| putative [Helicobacter pylori J99] 24 7.2
ref|NP_224081.1| DNA POLYMERASE I [Helicobacter pylori J99] 23 9.3
ref|NP_223692.1| putative [Helicobacter pylori J99] 23 9.3
ref|NP_222998.1| putative [Helicobacter pylori J99] 23 9.3
ref|NP_222988.1| putative [Helicobacter pylori J99] 23 9.3
ref|NP_222950.1| putative histidine kinase sensor protein [... 23 9.3
>ref|NP_224152.1| DNA REPAIR PROTEIN(RECOMBINATION PROTEIN N) [Helicobacter pylori
J99]
Length = 522
Score = 45.1 bits (105), Expect = 3e-06
Identities = 48/194 (24%), Positives = 78/194 (39%), Gaps = 35/194 (18%)
Query: 53 KEVRWFNKETPTSKNTYKKIQKLAVYKSP----------------LIKDYLYTIKKLF-- 94
++ R+F +T SKNT K + K + + L+ Y+ K F
Sbjct: 96 EKTRYFLNQTSLSKNTLKALLKGLIKRLSNDRFSQNELNDILMLSLLDGYIQNKNKAFSP 155
Query: 95 ---ATQKKIIDLEKNYKDLRAL--KEEFSKDLETDLSHSKKRFEL-------YTRLKSMS 142
A + K LEK ++ R+L K+ F KDLE L+ K + E Y RL
Sbjct: 156 LLDALETKFTRLEKLERERRSLEDKKRFQKDLEERLNFEKMKLERLDLKEDEYERLLEQK 215
Query: 143 KVFISKSIVKNLEKIALDFKSDRHSISQRAFEFFKYMNYQNLSLTDKGNMFLVAKFFKDS 202
K+ SK + + +ALD + H I+ + +L + G A K+
Sbjct: 216 KLLSSKEKLNDKIALALDVLENTHKITHALESVGHSAEFLKSALLEAG-----ALLEKEQ 270
Query: 203 ALLVNIARFEMKKI 216
A L R +++K+
Sbjct: 271 AKLEECERLDIEKV 284
Score = 30.0 bits (66), Expect = 0.100
Identities = 34/157 (21%), Positives = 65/157 (40%), Gaps = 7/157 (4%)
Query: 198 FFKDSALLVNIARFEMKKIDDSVKNSNPQDNLLDKQVWLNLLEHLKRLEEENYCFAKKRK 257
F ++L N + +K + + N N L+ + L+LL+ + + + +
Sbjct: 101 FLNQTSLSKNTLKALLKGLIKRLSNDRFSQNELNDILMLSLLDGYIQNKNKAFSPLLDAL 160
Query: 258 EFLETRAMELSKDLKFLTQANENDLPIYERGQRDKI------IKRCEKSLNFLQKELQCF 311
E TR +L ++ + L + ER +K+ +K E QK+L
Sbjct: 161 ETKFTRLEKLERERRSLEDKKRFQKDLEERLNFEKMKLERLDLKEDEYERLLEQKKLLSS 220
Query: 312 KTLLKSA-SIALENLQNNHQITAVTQDTQENTNALKN 347
K L ++AL+ L+N H+IT + + LK+
Sbjct: 221 KEKLNDKIALALDVLENTHKITHALESVGHSAEFLKS 257
>ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
pylori J99]
Length = 815
Score = 35.0 bits (79), Expect = 0.003
Identities = 58/232 (25%), Positives = 102/232 (43%), Gaps = 39/232 (16%)
Query: 46 KELNRQLKEVRWFNKETPTSKNTYKKIQKLAVYKSPLIKDYLYTIKKLFATQKKIIDLEK 105
KEL R+L ++ NK+ + +QK YKS LI +L + K++ +LE
Sbjct: 601 KEL-RKLTPLKDKNKKANYLEEPDFIVQK-TYYKSDLIPKHLIKQRFFEKETKELEELEN 658
Query: 106 NYKDLRALKEEFSKDLETDLSHSKKRFELYTRLKSMSKVFISKSIVKNLEKIALDFKSDR 165
+ AL +EF ++ HS + L+ LK I++S++K K A D + +
Sbjct: 659 ALNEKEALLDEFIEE------HSNEE-GLFDGLK------INESVLKKELKNATDLEDKQ 705
Query: 166 HSISQRAFEFFKYMNYQNLSLTDKGNMFLVAKFFKDSALLVNIARFEMKKIDDSVKNSNP 225
I + A E+ + N + L + +K L K F E+ +I D
Sbjct: 706 --ILKTALEWLEAKN-KALKMKNKAYEELELKAFH------QYKNLEINEIKD------- 749
Query: 226 QDNLLDKQVWLNLLEHL--KRLEEENYCFAKKRKEFLETRA---MELSKDLK 272
L+ K WLN L++ ++++ FA E + + + +EL K++K
Sbjct: 750 ---LIIKDKWLNSLKNALENKIQKRTNAFASALNEIISSYSNSLLELDKEVK 798
>ref|NP_223194.1| cag island protein [Helicobacter pylori J99]
Length = 1819
Score = 34.7 bits (78), Expect = 0.004
Identities = 52/227 (22%), Positives = 85/227 (36%), Gaps = 29/227 (12%)
Query: 154 LEKIALDFKSDRHSISQRAFEFFKYMNYQNLSLTDKGNMFLVAKFFKDSAL-----LVNI 208
LE + F DR+ + + N +KGNM FF D +NI
Sbjct: 256 LEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNI 315
Query: 209 ARFE----MKKIDDSVKNSNPQDNLLDKQVWLNLLEHLKR-LEEENYCFAKKRKEFLETR 263
A E ++ + + N + L L + +K+ LE N C + E +
Sbjct: 316 AEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERIK 375
Query: 264 AMELSKDLKFLT-----QANENDLPIYERGQRDKIIKRCEKSLNF------------LQK 306
++L KD Q + L + + D+ K C K +N LQK
Sbjct: 376 CLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERKECLKLINDPEIREKFRKELELQK 435
Query: 307 ELQCFKTLLKSASIALENLQNNHQIT--AVTQDTQENTNALKNTTQD 351
ELQ +K +K+A E + ++ A+ + Q+ + LKN D
Sbjct: 436 ELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTD 482
Score = 23.9 bits (50), Expect = 7.2
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 92 KLFATQKKIIDLEKNYKDLRALKEEFSK-DLETDLSHSKKRFELYTRL 138
KLF +K++D ++ + ++L EE K + E D +++ + E T L
Sbjct: 88 KLFKKARKLVDDKRPFTQQKSLDEETQKLNEEDDQENNEHQEETQTDL 135
>ref|NP_223025.1| putative [Helicobacter pylori J99]
Length = 501
Score = 34.7 bits (78), Expect = 0.004
Identities = 34/154 (22%), Positives = 69/154 (44%), Gaps = 11/154 (7%)
Query: 208 IARFEMKKIDDSVKNSNPQDNLLDKQVWLNLLEHLKRLEEENYCFAKKRKEFLETRAMEL 267
+ + E+K++ + VK Q+ V N + K ++E + K+ ++ +E
Sbjct: 181 VKKEEVKEMQEEVKEKQKQE------VAENPQDEEKPKDDETQGSVEPPKDEEVSKELET 234
Query: 268 SKDLKFLTQANENDLPIYERGQRDKIIKRCEKSLNFLQKELQCFKTLLKSASIALENLQN 327
++L+ + + PI E Q K K+ + + +EL+ + L+K ++ N
Sbjct: 235 QEELETPKEETQEQEPIKEETQEIKEEKQEKTQDSPSAQELEAMQELVKE----IQENSN 290
Query: 328 NHQITAVTQDTQENTNALKN-TTQDFNKTTNEPT 360
+ + TQ+TQENT ++ TQ+ E T
Sbjct: 291 DQENKKETQETQENTETPQDIETQELEIPKEEET 324
>ref|NP_223415.1| putative [Helicobacter pylori J99]
Length = 529
Score = 33.9 bits (76), Expect = 0.007
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 241 HLKRLEEENYCFAKKRKEFLETRAMELSKDLKFLTQANEN 280
HLK LE ++ F + K +LE EL K+ + L Q EN
Sbjct: 92 HLKHLEAQHKEFVRDEKRYLEKEKKELEKERQILEQEREN 131
>ref|NP_223405.1| putative [Helicobacter pylori J99]
Length = 400
Score = 32.3 bits (72), Expect = 0.020
Identities = 62/293 (21%), Positives = 125/293 (42%), Gaps = 40/293 (13%)
Query: 93 LFATQKKIIDLEKNYKDLRALKEEFSKDLETDLSHSKKRFELYTRLKSMSKVFISKSIVK 152
L A +K+ D+ K+ + L ++ +H +K +L +RL S+ + SK + K
Sbjct: 13 LSANTQKVSDIAKDIQHKETLLKK---------THEEKN-QLNSRLSSLGEAIRSKELQK 62
Query: 153 -NLEKIALDFKSDRHSISQRAFEFFKYM-NYQ-NLSLTDKGNMFLVAKFFKDSALLVNIA 209
+E+ + K + K + NY+ +L K FL + F L+
Sbjct: 63 VEIERQMVALKKSLEKNRNESLVQEKVLTNYRKSLDHLQKQRSFLQKRVFDT---LLEDF 119
Query: 210 RFEMKKIDDSVKNSNPQDNLLDKQVWLNLLEHLKRLEEENYCFAKKRKEFLETRAMELSK 269
F ++ +SN +++ + + NL H L + + +++K L +A+E+
Sbjct: 120 LFSQALKGQNLASSN---DVILQVAFENL--HQSTLSKMSQLSQEEKK--LNVQALEVKS 172
Query: 270 DLKFLT------QANENDLPIYERGQRDKIIKRCEKS-------LNFLQKELQCFKTLLK 316
++ ++ + E+ L + Q +K+I +K L+ L+KE Q LLK
Sbjct: 173 SIQKISSVIDEQKTRESTLKSLQTEQ-NKLILSMQKDYAIYNQRLSLLEKERQNLNALLK 231
Query: 317 SASIALENLQNNHQITAVTQDTQENTNALKNTTQDFNKTT-NEPTN--PNNNY 366
+I +N +N +++ + ++ Q+ N T+ N P P N+Y
Sbjct: 232 RLNIIKQNRENEERVSLKKSSQALEVKQVASSYQNINTTSYNGPKTIAPLNDY 284
>ref|NP_223383.1| putative [Helicobacter pylori J99]
Length = 338
Score = 31.6 bits (70), Expect = 0.034
Identities = 52/215 (24%), Positives = 86/215 (39%), Gaps = 35/215 (16%)
Query: 124 DLSHSKKRFELYTRLKSMSKVFISKSIVKNLEKIALDFKSDRHSISQRAFE-FFKYMNYQ 182
D S K+R E+ + +++ K + KIA +F+ + FE K +Y+
Sbjct: 48 DYSTQKQRLEIIQHAQKLAQTHHKKCYIHYAPKIARNFEMQARKVRYDFFETLIKEHSYK 107
Query: 183 NL----SLTDKGNMFLVAKFFKDSAL--LVNIARFEMKKIDDSVKN--SNPQDNL--LDK 232
+L L D+ FL+ + K + L L++ +E ++ V+ P+D L L K
Sbjct: 108 HLILAHHLNDRLEWFLM-QLSKGAGLNTLLSFQAYEKRESYAIVRPLLYTPKDTLKTLAK 166
Query: 233 QVWLNLLEHLKRLEEENYCFAKKRKEFLETRAMELSKDL----KFLTQANENDLPIYERG 288
+ L+ + CF RK + SK + KFL + E P+
Sbjct: 167 DQKFFEDDSNSSLKFKRNCF---RKHYANALMQHYSKGIIQSFKFLDKEKERLYPLIPVS 223
Query: 289 QR----------------DKIIKRCEKSLNFLQKE 307
Q DKI+K+ L+FLQKE
Sbjct: 224 QMHGITFFKHSHNALFMVDKILKKKGYVLSFLQKE 258
>ref|NP_222972.1| DIHYDROOROTASE [Helicobacter pylori J99]
Length = 378
Score = 30.4 bits (67), Expect = 0.076
Identities = 22/87 (25%), Positives = 41/87 (46%), Gaps = 6/87 (6%)
Query: 38 KFTPPINEKELNRQLKEVRWFNK-----ETPTSKNTYKKIQKLAVYKSPLIKDYLYTIKK 92
K PP+ +KE LKE N+ SKN+ ++ + + + I+D +++
Sbjct: 232 KIAPPLRDKEGQNALKEALKNNEIAMLTSLHASKNSNAQLFEESAFGCESIED-AFSVAY 290
Query: 93 LFATQKKIIDLEKNYKDLRALKEEFSK 119
F QKK+I ++ K + + +F K
Sbjct: 291 TFLVQKKVISFQQLIKVMTINQAKFLK 317
>ref|NP_223180.1| putative [Helicobacter pylori J99]
Length = 706
Score = 30.0 bits (66), Expect = 0.100
Identities = 36/153 (23%), Positives = 64/153 (41%), Gaps = 21/153 (13%)
Query: 23 DSLKSLLEKTHWEKEKFTPPINEKELNRQLKEVRWFNKETPTSKNTYKKIQKLAVYKSPL 82
D+L SL++K K K + P + N +L E +W +K T + +K ++KL + L
Sbjct: 130 DTLLSLIDKN---KRKPSEPSVKIMENFKLFE-KWISKNTDKLETIFKGLEKLMIVYIAL 185
Query: 83 IKD-----YLYTIKKLFATQKKIIDLEKNYKDLRALKEEFSKD--------LETDLSHSK 129
K+ ++ + DL +NY + EE KD +E D ++
Sbjct: 186 DKEKDDPQLIFESMNSKGIELTQTDLIRNYIIMETETEEKQKDFYNGYWRAMEEDFKQNE 245
Query: 130 KRFELYTRLKSMSKVFISKSIVKNLEKIALDFK 162
F + R + I + N++K+ FK
Sbjct: 246 TLFNRFVR----HYLTIKTGKIPNIKKVYGAFK 274
>ref|NP_223639.1| putative [Helicobacter pylori J99]
Length = 328
Score = 29.6 bits (65), Expect = 0.13
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Query: 34 WEKEKFTPPINEKELNRQLKEVRWFNKETPTSKNTYKKIQKLAVYK-----SPLIKDYLY 88
WEK INE+EL Q+K ++T K ++K+ + K S ++ D +
Sbjct: 27 WEKHVKAKAINEEELEEQVKAKAKEQQKTQREKTLNGFLKKVGLKKRDMLQSTMLFDEVK 86
Query: 89 TIKKLFATQKKIID 102
LF ++KI D
Sbjct: 87 EADVLFQAERKIGD 100
>ref|NP_222797.1| methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
Length = 673
Score = 29.6 bits (65), Expect = 0.13
Identities = 21/66 (31%), Positives = 34/66 (50%), Gaps = 10/66 (15%)
Query: 298 EKSLNFLQKELQCFKTLLKSASIALENLQNNHQ------ITAVTQDTQENTNALKNTTQD 351
EK+LN L +E+ ++LK AS+ N N+ + +T+ + +LKNTTQ
Sbjct: 465 EKALNTLGQEIS---SMLK-ASLGFANALNHESKDLKTCVDNLTKTAHKQERSLKNTTQS 520
Query: 352 FNKTTN 357
+ TN
Sbjct: 521 LEEITN 526
>ref|NP_223629.1| putative [Helicobacter pylori J99]
Length = 487
Score = 28.9 bits (63), Expect = 0.22
Identities = 25/109 (22%), Positives = 49/109 (44%), Gaps = 3/109 (2%)
Query: 254 KKRKEFLETRAMELSKDLKFLTQANENDLPIYERGQRDKIIKRCEKSLNFLQKE--LQCF 311
++ K++ E + K F T++ D + + ++ + +++L KE LQ F
Sbjct: 208 EEMKKYYENHRKDFKKPTSFKTRSLYFDASLEKTDLKELEEYYHKNKVSYLDKEGKLQDF 267
Query: 312 KTLLKSASIALENLQNNHQITAVTQDTQENTNALKNTTQDFNKTTNEPT 360
K++ + L N+Q ++ + + NA TTQDF K + T
Sbjct: 268 KSVQEQVKHDL-NMQKANEKALRSYIALKKGNAQNYTTQDFEKNNSPYT 315
Score = 23.5 bits (49), Expect = 9.3
Identities = 12/54 (22%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 45 EKELNRQLKEVRWFNKETPTSKNTYKKIQKLAVYKSPLIKDYLYTIKKLFATQK 98
++E+ +++++ F K+ + YK I K + Y+ K + ++++L QK
Sbjct: 114 KQEVAKEIRKTNVFQKDGVFDEELYKNILKQSHYRP---KHFEESVERLLILQK 164
>ref|NP_223498.1| putative [Helicobacter pylori J99]
Length = 245
Score = 28.9 bits (63), Expect = 0.22
Identities = 38/135 (28%), Positives = 55/135 (40%), Gaps = 37/135 (27%)
Query: 212 EMKKIDD--SVKNSNPQDNLLDKQVWLNLLEHLKRLEEENYCFAKKRKEFLETRAMELSK 269
EMKK+ + S K++ P L+ K L E AK +EFL T M LS
Sbjct: 99 EMKKLKEILSAKDNTP-------------LKEYKELLSEKLIHAKSSQEFLNTANMLLSL 145
Query: 270 DLKFLTQANENDLPIYERGQRDKIIKRCEKSLNFL----------------QKELQCF-K 312
+ L+ EN ER + +K ++S++F +KE Q F K
Sbjct: 146 QSQVLSFVVEN-----ERKKAFLQMKAKKQSVDFYALYPNLGEIGGVIYLKEKEKQLFLK 200
Query: 313 TLLKSASIALENLQN 327
T L+ L+ QN
Sbjct: 201 TTLQRTKEVLKEAQN 215
>ref|NP_223759.1| putative [Helicobacter pylori J99]
Length = 267
Score = 28.5 bits (62), Expect = 0.29
Identities = 37/166 (22%), Positives = 69/166 (41%), Gaps = 19/166 (11%)
Query: 210 RFEMKKIDDSVKNSNPQDNLLDKQVWLNLLEHLKRLEEENYCFAKKRKEFLETRAMELSK 269
+ +MK+ + N + +++V L + + ++ E K + +ET L+
Sbjct: 89 KLKMKEYERFFSEFNTSMHANEQEVTNTLNANAENIKSE---IKKLENQLIETTTRLLTS 145
Query: 270 DLKFLTQA--NENDLPIYERGQRDKIIKRCEKSLN--FLQKELQCFKTLLKSASIALENL 325
FL QA N N+ + Q + I + + + N + Q + ++ + A +
Sbjct: 146 YQIFLNQARDNANNQITKNKTQSLEAITQAKNNANNEISNNQTQAITNITEAKTNANNEI 205
Query: 326 QNNHQITAVTQ--------DTQENTN---ALKNTTQDFNKTTNEPT 360
NN Q A+T TQ N N A+ N TQ+ + T+E T
Sbjct: 206 SNN-QTQAITNINEAKESATTQINANKQEAINNITQEKTQATSEIT 250
Score = 25.0 bits (53), Expect = 3.2
Identities = 41/167 (24%), Positives = 60/167 (35%), Gaps = 39/167 (23%)
Query: 232 KQVWLNLLEHLKRLEEENYCFAKKRKEFLE--TRAMELSKDLKFLTQANENDLPIYERGQ 289
K++ LL+ L+ N F+++ + L+ R +E+ L F ANE D +
Sbjct: 20 KEITNELLKQLQNALRSNAHFSEQVELSLKCIVRILEVLLSLDFFKNANEIDSSL----- 74
Query: 290 RDKI--IKRCEKSLNFLQKELQCF----------------KTL------LKSASIALEN- 324
R+ I + +SL KE + F TL +KS LEN
Sbjct: 75 RNSIEWLTNAGESLKLKMKEYERFFSEFNTSMHANEQEVTNTLNANAENIKSEIKKLENQ 134
Query: 325 -------LQNNHQITAVTQDTQENTNALKNTTQDFNKTTNEPTNPNN 364
L ++QI N KN TQ T N NN
Sbjct: 135 LIETTTRLLTSYQIFLNQARDNANNQITKNKTQSLEAITQAKNNANN 181
>ref|NP_223990.1| putative [Helicobacter pylori J99]
Length = 1164
Score = 28.1 bits (61), Expect = 0.38
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 82 LIKDYLYTIKKLFATQKKIIDLEKNYKDLRALKEEFSKDLETD 124
++K+YL +IK L ++ Y L+ LK +F K+L+ +
Sbjct: 1 MLKEYLESIKDLTPESNELTHRPSLYNLLKNLKNDFKKELKIE 43
>ref|NP_223561.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 363
Score = 28.1 bits (61), Expect = 0.38
Identities = 29/114 (25%), Positives = 54/114 (46%), Gaps = 11/114 (9%)
Query: 253 AKKRKEFLETRAMELSKD--LKFLTQANENDLPIYERGQRDKIIKRCEKSLNFLQKELQC 310
A++RK+ T A L K+ +K + +N P + DKII + + L ++ + +
Sbjct: 14 AQERKKEQPTIANGLDKNAFMKLFLEQLKNQDPTAPM-ETDKIITQTAQ-LTQVEMQEEN 71
Query: 311 FKTLLKSASIALENLQNNHQITAVTQDTQENTNALKNTTQDFNKTTNEPTNPNN 364
KT+ + AS N + N + ++ ALK+T ++ NK ++ NN
Sbjct: 72 KKTMQEVASAMKSNKETNESL-------KDFQGALKDTMENLNKGMDDSLKANN 118
>ref|NP_223516.1| putative [Helicobacter pylori J99]
Length = 218
Score = 28.1 bits (61), Expect = 0.38
Identities = 54/226 (23%), Positives = 89/226 (38%), Gaps = 40/226 (17%)
Query: 149 SIVKNLEKIALDFKSDRHSISQRAFEFFKYMNYQNLSLTDKGNMFLVAKF---------- 198
SI +NLE++ +FKSD + + AF K+ L +F+V F
Sbjct: 2 SIKENLEQVRNEFKSD-EKLLEGAFRLEKFFKRYKWVL-----LFIVVAFIAYLGDTKLQ 55
Query: 199 -FKDSALLVNIARFEMKKIDDSVKNSNPQDNLLDKQVWLNLLEHLKRLEEENYCFAKKR- 256
+K I + ++ +S N Q L + L L R E N KR
Sbjct: 56 DYKHEQTRERITQI-YNEVLESPNNIALQKRLKEVAPELYDLYQFARASERNDANEFKRL 114
Query: 257 --------KEFLETRAMELSKD---------LKFLTQANENDLPIYERGQRDKIIKRCEK 299
K F + LS+D LK ++ E +L +YE +D IK+ +
Sbjct: 115 SQSSNEIVKAFAKYSYASLSRDKNLLEKSPILKEMSALQEVNL-LYEENSKD-AIKKAHQ 172
Query: 300 SLNF--LQKELQCFKTLLKSASIALENLQNNHQITAVTQDTQENTN 343
SL+ L L ++LK + + QN + T + ++T + T+
Sbjct: 173 SLSTIPLSSSLYAIISVLKHYGMLEDIQQNPSKPTNLKKETIQGTH 218
>ref|NP_224170.1| LEUCYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 806
Score = 27.7 bits (60), Expect = 0.50
Identities = 21/65 (32%), Positives = 32/65 (48%), Gaps = 7/65 (10%)
Query: 292 KIIKRCEKSLNFLQKELQCFKTLLKSA------SIALENLQNNHQITAVTQDTQENTNAL 345
KI C K+ N +Q E++ F T + +IA E+ H I V+Q+ + A+
Sbjct: 232 KIADECLKACNNIQ-EIEVFTTRADTIYGVTYIAIAPEHPLVEHAIKRVSQEDSKMIKAI 290
Query: 346 KNTTQ 350
NTTQ
Sbjct: 291 LNTTQ 295
>ref|NP_223427.1| putative PROBABLE N-ACETYLMURAMOYL-L-ALANINE AMIDASE [Helicobacter
pylori J99]
Length = 469
Score = 27.7 bits (60), Expect = 0.50
Identities = 25/107 (23%), Positives = 45/107 (41%), Gaps = 3/107 (2%)
Query: 26 KSLLEKT--HWEKEKFTPPINEKELNRQLKEVRWFNKETPTSKNTYKKIQKLAVYKSPLI 83
K EKT H + P+NE+ +++ + KE P + K+I K + K +
Sbjct: 152 KKAKEKTTKHAHSKHAHSPLNERSAKKEIPKKEIPKKEIPKKEIPKKEIPKKEIPKKEIP 211
Query: 84 KDYLYTIKKLFATQKKIIDLEKNYKDLRALKEEFSKDLETDLSHSKK 130
K + + ++ +I EKN ++ K + K + D H K
Sbjct: 212 KKEIPKKEAENESKNQIFIAEKNDTWIKT-KRKKHKKIVLDAGHGGK 257
>ref|NP_223176.1| putative [Helicobacter pylori J99]
Length = 450
Score = 27.3 bits (59), Expect = 0.65
Identities = 30/125 (24%), Positives = 51/125 (40%), Gaps = 29/125 (23%)
Query: 240 EHLKRLEEENYCFAKKRKEFLETRAMELSKDLKFLTQANENDLPIYERGQRDKIIKRCEK 299
E+ LEE+NY A+++ + E R S+D + T+A + + ER + +R EK
Sbjct: 279 ENAPTLEEKNYQKAERKFDAKEERRR--SRDERKKTKATKKAMEFEEREKEHD--ERDEK 334
Query: 300 SLNFLQKELQCFKTLLKSASIALENLQNNHQITAVTQDTQENTNALKNTTQDFNKTTNEP 359
+K L+ K E NA +N + ++ NEP
Sbjct: 335 ETEERRKALEMDKG-------------------------NEKVNAKENEREINQESANEP 369
Query: 360 TNPNN 364
++ NN
Sbjct: 370 SSENN 374
>ref|NP_223108.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 455
Score = 27.3 bits (59), Expect = 0.65
Identities = 30/125 (24%), Positives = 58/125 (46%), Gaps = 10/125 (8%)
Query: 35 EKEKFTPPINEKELNRQLKEVRWFNKETPTSKNTYKKIQKLAVYKSPLIKDYLYTIKKLF 94
E+ K P I E + +L E +T ++++KLA S ++Y ++ K
Sbjct: 54 EENKKAPLIPESLYDEELNE----EDVVMQLSSTVEEMRKLAGVSSNQ-RNYTFSKNKTL 108
Query: 95 ATQKKIID---LEKNYKD--LRALKEEFSKDLETDLSHSKKRFELYTRLKSMSKVFISKS 149
+ ++ LE N +D L+ALK+E + E + K+ E+ +SK+ S
Sbjct: 109 LEKDAPLEDTPLEANKQDALLQALKDEANHKKEREKREVKQEEEIKDINAQLSKIRDSLK 168
Query: 150 IVKNL 154
+++N+
Sbjct: 169 LIQNM 173
>ref|NP_222772.1| putative [Helicobacter pylori J99]
Length = 220
Score = 27.3 bits (59), Expect = 0.65
Identities = 34/130 (26%), Positives = 54/130 (41%), Gaps = 8/130 (6%)
Query: 243 KRLEEENYCFAKKRKEFLETRAMELSK---DLKFLTQANENDLPIYERGQRDKIIKRCEK 299
+RLE EN KE L EL K +LK Q EN+ + R + + + + +
Sbjct: 47 ERLERENKNLTAD-KENLTKEKTELQKQVNELKNSKQVLENEKADWLREKEN--LTKDRE 103
Query: 300 SLNFLQKELQCFKTLLKSASIALENLQNNHQITAVTQDTQENTNALKNTTQDFNKTTNEP 359
+L + EL +L + L + N +T ++Q+ N LKN+ Q +
Sbjct: 104 NLTKEKTELTEKNKVLTTEKERLATEKEN--LTKEKTESQKQVNELKNSKQVLENEKADL 161
Query: 360 TNPNNNYGMD 369
TN N D
Sbjct: 162 TNENTKLKTD 171
>ref|NP_224071.1| DNA POLYMERASE III, ALPHA CHAIN [Helicobacter pylori J99]
Length = 1211
Score = 26.9 bits (58), Expect = 0.84
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 113 LKEEFSKDL-ETDLSHSKKRFELYTRLKSMSKVFISKSIVKNLEKIALDFK 162
+K+EF + + E+ L H KR LY +K K F +S + EKI DFK
Sbjct: 1154 VKKEFLRQIKESALKHQGKR-PLYLIIKDKDKQFKIQSDLMVNEKIKDDFK 1203
>ref|NP_223970.1| co-chaperone with DnaK [Helicobacter pylori J99]
Length = 369
Score = 26.9 bits (58), Expect = 0.84
Identities = 18/66 (27%), Positives = 32/66 (48%)
Query: 135 YTRLKSMSKVFISKSIVKNLEKIALDFKSDRHSISQRAFEFFKYMNYQNLSLTDKGNMFL 194
Y + + K ++I K+ K+AL + DR++ + A E FK +N L D+ L
Sbjct: 5 YYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLGDEKKRAL 64
Query: 195 VAKFFK 200
++ K
Sbjct: 65 YDRYGK 70
>ref|NP_223770.1| putative [Helicobacter pylori J99]
Length = 331
Score = 26.9 bits (58), Expect = 0.84
Identities = 40/200 (20%), Positives = 83/200 (41%), Gaps = 27/200 (13%)
Query: 7 QIESLKKRENALFDHLDSLKSLLEKTHWEKEKFTPPINEKELNR----QLKEVRWFNKET 62
Q + KK L + + ++L K H + E T ++++ L Q +++ N
Sbjct: 25 QSGATKKELKQLQVNSKNFSNILTKIHSQVEANT--LSQEGLRSVYEGQANKIKDLNNAI 82
Query: 63 PTSKNTYKKIQKLAVYKSPLIKDYLYTIKKL----FATQKKIIDLEKNYKDLRALKEEFS 118
+ + + + ++ ++ +K T++ L A Q+ I L+K K++ L + S
Sbjct: 83 LSQEESLRALKASQEVQANTLKQQSQTLEDLRNEIHANQQAIQQLDKQNKEMSELLTKLS 142
Query: 119 KDLETDLSHSKKRFELYTR-----LKSMSKVFISKSI---------VKNLEKIALDFKSD 164
+DL + ++ +K + LKS + + + K EK ++F D
Sbjct: 143 QDLVSQIALIQKALKEQEEKAEKPLKSSTPANKNPPLKAETPKNQEKKTQEKAKVEFDKD 202
Query: 165 ---RHSISQRAFEFFKYMNY 181
+ I Q A FF+ +Y
Sbjct: 203 LSKQKEIFQEALSFFRNKSY 222
>ref|NP_223651.1| putative [Helicobacter pylori J99]
Length = 339
Score = 26.9 bits (58), Expect = 0.84
Identities = 34/184 (18%), Positives = 74/184 (39%), Gaps = 34/184 (18%)
Query: 90 IKKLFATQKKIIDLEKNYKDLRALKEEFSKDLETDLSHSKKRFELYTRLKSMSKVFISKS 149
++++ + K + E+ +D +E +K+++ +K+ L K + S
Sbjct: 3 LQQIDELENKFEEQEEQAQDTPLKQEPSTKEVKIPKKRGRKKSLLDEDKKKSFNIAFSPC 62
Query: 150 IVKNLEKIALDFKSDRHS----ISQRAFEFFKY----------MNYQNLSLTDKG----- 190
++K L + L+F S + + I + K+ + L +KG
Sbjct: 63 VIKELNEFLLEFGSFKETRSTFIEEALIRHLKHRKNTQEQKLLKQLERLQNKEKGIMKTM 122
Query: 191 --NMFLVAK-FFKDSALLVNIARFEMKKIDDSVKNSNPQDNLLDKQVWLNLLEHL--KRL 245
N F K +KD+ L K D+++ Q +L++K + N+L ++ ++
Sbjct: 123 NLNEFFTHKIIYKDTPL----------KFKDTLEQEISQASLVEKLILANILANMVFAKI 172
Query: 246 EEEN 249
EN
Sbjct: 173 SNEN 176
>ref|NP_223388.1| putative [Helicobacter pylori J99]
Length = 192
Score = 26.9 bits (58), Expect = 0.84
Identities = 18/53 (33%), Positives = 27/53 (49%)
Query: 296 RCEKSLNFLQKELQCFKTLLKSASIALENLQNNHQITAVTQDTQENTNALKNT 348
R EK F Q+ L+ F+ L + + LE+L+NN + T T A K+T
Sbjct: 29 RDEKLKRFNQEALEVFQKLERESLKELESLKNNEEWENFTIAFYGETGAGKST 81
>ref|NP_223170.1| DNA POLYMERASE III, BETA CHAIN [Helicobacter pylori J99]
Length = 374
Score = 26.9 bits (58), Expect = 0.84
Identities = 16/36 (44%), Positives = 21/36 (57%)
Query: 3 SATSQIESLKKRENALFDHLDSLKSLLEKTHWEKEK 38
S +S I+ ++ NALF+ LDS S KT E EK
Sbjct: 273 SLSSTIKLTLEKNNALFESLDSEHSETAKTSVEIEK 308
>ref|NP_223618.1| putative [Helicobacter pylori J99]
Length = 340
Score = 26.6 bits (57), Expect = 1.1
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 17/92 (18%)
Query: 90 IKKLFATQKKIIDLEKNYKDLRA-LKEEFS--------KDLETDLSHSK--------KRF 132
++++ A + D+EK Y+ LRA L+EE+S K + ++ K K
Sbjct: 79 LEEIKALDLGVKDIEKTYEKLRANLEEEYSSVAVNSVVKKVIEEVRDQKPYLASLINKPN 138
Query: 133 ELYTRLKSMSKVFISKSIVKNLEKIALDFKSD 164
E + ++S+ + + K+ +EKI L F D
Sbjct: 139 EFNSEIESIMQQNLIKNAKLEIEKINLSFSKD 170
>ref|NP_223274.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 3194
Score = 26.6 bits (57), Expect = 1.1
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 299 KSLNFLQKELQCFKTLLKSA--SIALENLQ-NNHQITAVTQDTQENTNALKNTTQDFNKT 355
K++NF +K SA S+ LEN N++ I A Q+ N N+ + + FN T
Sbjct: 1095 KNVNFSDNGTLIYKGGENSAGNSLTLENNTFNSYNINAKAQNLIFNNNSFNSGSYSFNDT 1154
Query: 356 TN 357
N
Sbjct: 1155 KN 1156
>ref|NP_223135.1| putative [Helicobacter pylori J99]
Length = 631
Score = 26.6 bits (57), Expect = 1.1
Identities = 27/126 (21%), Positives = 51/126 (40%), Gaps = 6/126 (4%)
Query: 84 KDYLYTIKKLFATQKKII-DLEKNYKDLRALKEEFSKDLETDLSHSKKRFELYTRLKSMS 142
+D + IK +F+ + DL+ K+L KE+F L T ++ FE L
Sbjct: 506 QDAIVRIKSMFSPRSNHAKDLKNLQKNLIRFKEDFFTHLNTPCKTKQEAFEWVDSLSGFC 565
Query: 143 KVFISKSIVKNLEKIALDFKSDRHSISQRAFEFFKYMNYQNLSLTDKGNMFLVAKFFKDS 202
+ +K+ I + F+ I Q ++ L+ K + + +F K +
Sbjct: 566 QTASAKT-----PTIGILFEGSVAHILQSVLIVSLHLKENELTRFIKFSQNALKQFLKKA 620
Query: 203 ALLVNI 208
LL+ +
Sbjct: 621 CLLLQM 626
>ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99]
Length = 856
Score = 26.6 bits (57), Expect = 1.1
Identities = 21/78 (26%), Positives = 34/78 (42%), Gaps = 13/78 (16%)
Query: 242 LKRLEEENYCFAKKRKEFLETRAMELSKDLKFLTQAN-------ENDLPIYERGQRDKII 294
++RLE E + KE R E+ K+L L + EN+ ++ K I
Sbjct: 416 IQRLEMEKQALEMENKESNHKRMQEILKELSDLKEEKIQLEAQFENEKEVF------KEI 469
Query: 295 KRCEKSLNFLQKELQCFK 312
R + + L+KE + FK
Sbjct: 470 SRLKMEMEGLKKEAERFK 487
>ref|NP_222774.1| putative [Helicobacter pylori J99]
Length = 327
Score = 26.6 bits (57), Expect = 1.1
Identities = 60/265 (22%), Positives = 103/265 (38%), Gaps = 37/265 (13%)
Query: 90 IKKLFATQKKIIDLEKNYKDLRALKEEFSKDLETDLSHSKKRFELYTRLKSMS-KVFISK 148
I+K F + +LE +L E ++ E + + + + +L+ + K+FI+K
Sbjct: 5 IEKWFGFSQIREELEARISELEDENTELLREREYLAAETSELKDANDQLRQKNDKLFITK 64
Query: 149 SIVKNLEKIALDFKSDRHSISQRAFEFFKYMNYQNLSLTDKGNMFLVAKFFKDSALLVNI 208
L K + ++ S+S + + + N L N K K+ A
Sbjct: 65 D---KLTKENTELFAENESLSVK----ISGLEHSNDQLWQNNN-----KLTKEKA----- 107
Query: 209 ARFEMKKIDDSVKNSNPQ-----DNLLDKQVWLNLLEHLKRLEEENYCFAKKRKEFL-ET 262
E+K D + N + D L +++ L +RL+ EN K E E
Sbjct: 108 ---ELKTEKDILAKENTRLLAARDRLTEEK--RELTTEKERLKRENTELTHKITELTKEN 162
Query: 263 RAMELSKDL---KFLTQANENDLPIYERGQRDKIIKRCEKSLNFLQKELQCFKTLLKSAS 319
+A+ D + NE D ER + EK L+KE Q LK
Sbjct: 163 KALTTENDKLNHQVTALTNERDSLEQERARLQDAHGFLEKRCTNLEKENQRLTDKLKQLE 222
Query: 320 IALENLQN-NHQITAVTQDTQENTN 343
A ++L+N N+Q+ + EN+N
Sbjct: 223 SAQKSLENTNNQL----RQALENSN 243
>ref|NP_223971.1| putative [Helicobacter pylori J99]
Length = 376
Score = 26.2 bits (56), Expect = 1.4
Identities = 64/300 (21%), Positives = 110/300 (36%), Gaps = 75/300 (25%)
Query: 51 QLKEVRWFNKETPTSKNTYKKIQKLAVYKSPLIKDYLYTIKKLFATQKKIIDLEKNYKDL 110
QLKE++ N + + + Q + L+K ++KL A +K L+++ +
Sbjct: 61 QLKEIKKANSTLTSQRRFFNASQIRLMDTDALLKQSALELEKLQALEK---HLKESMEHE 117
Query: 111 RALKEEFSKDLETDLSHSKKRFELYTRLKSMSKVFISKSIVKNLEKIALDFKSDRHSISQ 170
R +KE + L+ + S VKNLE+ +
Sbjct: 118 RLIKESQALFLQEHCPY--------------------LSGVKNLEEAS------------ 145
Query: 171 RAFEFFKYMNYQNLSLTDKGNMFLVAKFFKDSALLVNIARFEMKKIDDSVKNSNPQDNLL 230
L + +K N + K+ L ++R ++ +++ + ++ +
Sbjct: 146 -----------NALEVQEKNNALFL---LKEPKLFHLLSRLDLMSALNALCDQVLENEIQ 191
Query: 231 DKQVWLNLLEHLKRLEEENYCFAKKRKEFLETRAMELSK---DLKFLTQANENDLPIYER 287
D+Q H K LE A +F +AM L K L+ QA E+ L
Sbjct: 192 DQQ------SHNKTLEYN----ALMNHDFQAYKAMRLKKIKNKLQSQIQAKEDAL----- 236
Query: 288 GQRDKIIKRCEKSLNFLQKELQCFKTLLKSASIALENLQNNHQITAVTQDTQENTNALKN 347
K EK L L+ C K LKS + LQ +Q + +D +E NA N
Sbjct: 237 ----KTFLPLEKRLETLKSRFLCDKENLKSCA---NQLQQRYQNALIERD-KELKNAKNN 288
>ref|NP_223801.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 1237
Score = 26.2 bits (56), Expect = 1.4
Identities = 12/28 (42%), Positives = 17/28 (59%)
Query: 322 LENLQNNHQITAVTQDTQENTNALKNTT 349
L+N NN+QI VT D +N +A T+
Sbjct: 401 LKNTSNNYQIGTVTNDQGQNISAYDCTS 428
>ref|NP_223641.1| putative [Helicobacter pylori J99]
Length = 268
Score = 26.2 bits (56), Expect = 1.4
Identities = 15/36 (41%), Positives = 20/36 (54%), Gaps = 4/36 (11%)
Query: 335 TQDTQENTNAL----KNTTQDFNKTTNEPTNPNNNY 366
TQ ++ NAL N +DFNKT +P +P NY
Sbjct: 85 TQKDLDDFNALVQKLPNLPKDFNKTLIKPQSPFFNY 120
>ref|NP_222816.1| methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
Length = 564
Score = 26.2 bits (56), Expect = 1.4
Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
Query: 288 GQRDKIIKRCEKSLNFLQKELQCFKTLLKSASIALENLQNNHQITAVTQDTQENTNALKN 347
G R+ I + + +N + + +K S N + + Q TQE ++KN
Sbjct: 262 GDRNDEISQVGRGINLFVENARLIMEEIKGISTL-----NKTSMDKLVQITQETQKSMKN 316
Query: 348 TTQDFNKTTNEPTN 361
++ N N+ T+
Sbjct: 317 SSTTLNSVKNKATD 330
>ref|NP_222768.1| putative TYPE II restriction enzyme [Helicobacter pylori J99]
Length = 260
Score = 26.2 bits (56), Expect = 1.4
Identities = 31/158 (19%), Positives = 60/158 (37%), Gaps = 34/158 (21%)
Query: 230 LDKQVWLNLLEHLKR-----------------LEEENYCFAKKRKEFLETRAMELSKDLK 272
+D ++W N+ H KR +++ + K+ K LE +++
Sbjct: 35 IDSKIWSNVEYHFKRKDNLALITELLNLDLFPIKDSYMAYLKRDKSALERNPRTINRICG 94
Query: 273 FLTQANENDLPIYERGQRDKIIKRCEKSLNFLQKELQCFKTLLKSASIALENLQNNHQIT 332
L YE G +KI ++C + ++ FK + + S+ +E + N I
Sbjct: 95 RL----------YEMG-LNKIFEKCSEPKETNRQIGPMFKDWINNKSLGVEPVDLNDFI- 142
Query: 333 AVTQDTQENTNALKNTTQDFNKTTNEPTNPNNNYGMDF 370
EN LK + + N +++ G+DF
Sbjct: 143 -----ANENDAILKASDNVMAEFAKSHLNYHHHKGLDF 175
>ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter pylori J99]
Length = 831
Score = 25.8 bits (55), Expect = 1.9
Identities = 22/84 (26%), Positives = 37/84 (43%), Gaps = 4/84 (4%)
Query: 83 IKDYLYTIKKLFATQKKIIDLEKNYKDLRALKEEFSKDLETDLSHS--KKRFELYTRLKS 140
++D + I T + ++ KNY + L++ K E D+SH K E YTR
Sbjct: 493 LRDRMEFISVSSYTPSEKEEIAKNYLIPQELEKHALKPSEVDISHECLKLIIEKYTREAG 552
Query: 141 MSKVFISKSIVKNLEKIALDFKSD 164
+ + + I + K AL + D
Sbjct: 553 VRD--LRRQIATIMRKAALKYLED 574
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 25.8 bits (55), Expect = 1.9
Identities = 21/83 (25%), Positives = 45/83 (53%), Gaps = 5/83 (6%)
Query: 54 EVRWFNKETPTSKNTYK--KIQKLAVYKSPLIKDYLYTIKKLFATQKKIIDLEKNYKDLR 111
E++ ++ + SK+ Y+ K++++ K T KKL K+I E+N + L
Sbjct: 2092 EIKLYDLKNEESKD-YELIKVKEVEPLKENASMSEELTHKKLKEQNKQIA--EQNKEKLD 2148
Query: 112 ALKEEFSKDLETDLSHSKKRFEL 134
A+K++F+ +L T + ++ ++L
Sbjct: 2149 AIKKQFASNLNTLFVNEEEDYKL 2171
Score = 25.0 bits (53), Expect = 3.2
Identities = 13/44 (29%), Positives = 23/44 (51%)
Query: 243 KRLEEENYCFAKKRKEFLETRAMELSKDLKFLTQANENDLPIYE 286
K+L+E+N A++ KE L+ + + +L L E D + E
Sbjct: 2130 KKLKEQNKQIAEQNKEKLDAIKKQFASNLNTLFVNEEEDYKLLE 2173
>ref|NP_223235.1| AMINOPEPTIDASE [Helicobacter pylori J99]
Length = 496
Score = 25.8 bits (55), Expect = 1.9
Identities = 20/87 (22%), Positives = 39/87 (43%)
Query: 14 RENALFDHLDSLKSLLEKTHWEKEKFTPPINEKELNRQLKEVRWFNKETPTSKNTYKKIQ 73
++NAL ++L +L L+ +E + F P E L + + T N+ +K
Sbjct: 101 KDNALLENLKALFLGLKLGLYEYDTFKPNKKESVLKEVIVALELHKHCEKTCANSLEKSA 160
Query: 74 KLAVYKSPLIKDYLYTIKKLFATQKKI 100
K A+ + ++ + L ++ L T I
Sbjct: 161 KEALKYAEIMTESLNIVRDLVNTPPMI 187
>ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helicobacter pylori J99]
Length = 949
Score = 25.8 bits (55), Expect = 1.9
Identities = 20/77 (25%), Positives = 36/77 (45%), Gaps = 6/77 (7%)
Query: 30 EKTHWEKEKFTPPINEKELNRQLKEVRWFNKETPTSKNTYKKIQKLAVYKSPLIKDYLYT 89
+KT +K++ PI +K ++++ V F +TP +NT K + + K+ K L
Sbjct: 107 KKTKEKKKEAPAPIIKK---KEIEIVNTFENQTPLVENTPKAVSHSQIEKA---KQKLQE 160
Query: 90 IKKLFATQKKIIDLEKN 106
I+K K+ N
Sbjct: 161 IQKSREALNKLTQSNTN 177
>ref|NP_224114.1| putative component of cation transport for cbb3-type oxidase
[Helicobacter pylori J99]
Length = 788
Score = 25.4 bits (54), Expect = 2.5
Identities = 40/189 (21%), Positives = 75/189 (39%), Gaps = 25/189 (13%)
Query: 75 LAVYKSPLIKDYLYTIKKLF------ATQKKIIDLEKNYKDLRALKEEFSKDLETDLSHS 128
L V+K L + L +KK+F TQK+++ EK + EEF + L L +
Sbjct: 485 LIVFKEALFLETLAKVKKIFIDKTGTLTQKEVLLKEK------IIHEEFDERLLKSLLKT 538
Query: 129 KKRFELYTRLKSMSKVFISKSIVKNLEKIALDFKSDRHSISQRAF--EFFKYMNYQNLSL 186
++ LK++ + +LEKI + S K++N + L
Sbjct: 539 REHLAHNAILKTLDGDEV------DLEKIEFFAHGLKASYQNETLLVGSLKFLNAMGVDL 592
Query: 187 TDKGNMFLVAKFFKDSAL-----LVNIARFEMKKIDDSVKNSNPQDNLLDKQVWLNLLEH 241
K + ++ F K+ L L + K++ +++N + +L ++ E
Sbjct: 593 KVKESANIMVGFAKNKTLCALFILEERLKANAKEVIQALQNQGLELEILSGDNESSVKEC 652
Query: 242 LKRLEEENY 250
K+L Y
Sbjct: 653 AKKLGISKY 661
>ref|NP_223400.1| putative [Helicobacter pylori J99]
Length = 327
Score = 25.4 bits (54), Expect = 2.5
Identities = 15/35 (42%), Positives = 23/35 (64%), Gaps = 3/35 (8%)
Query: 73 QKLAVYKSPLIKDYLYTIKKLFATQK--KIIDLEK 105
QKL +K PL+KD L +KK+F + +++D EK
Sbjct: 286 QKLR-FKVPLLKDMLEYLKKVFDKENLDEVLDEEK 319
>ref|NP_223384.1| putative [Helicobacter pylori J99]
Length = 355
Score = 25.4 bits (54), Expect = 2.5
Identities = 25/97 (25%), Positives = 46/97 (46%), Gaps = 15/97 (15%)
Query: 164 DRHSISQRAFEFFKYMNYQNLSLTDKGNMFLVAKFFKDSALLVNIARFEMKKIDDSVKNS 223
++H + ++ N+ L LTD N+F AK K S K+ID+S+ S
Sbjct: 43 EKHDSLEEIYKATNEKNFLQLFLTDYANLF-AAKVIKVS-----------KEIDESLIPS 90
Query: 224 NPQDNLLDKQVWLNLLEHLKRLEEENYCFAKKRKEFL 260
++ L+ + + ++ L+ L E+ F+ R +FL
Sbjct: 91 YYKEKNLEVEDFF-IISDLRELVRED--FSLLRDQFL 124
>ref|NP_223331.1| putative [Helicobacter pylori J99]
Length = 1167
Score = 25.4 bits (54), Expect = 2.5
Identities = 32/143 (22%), Positives = 58/143 (40%), Gaps = 17/143 (11%)
Query: 99 KIIDLEKNYKDL---------RALKEEFSKDLETDLSHSKKRFELYTRLKSMSKVFISKS 149
K I KN KD LK++ K+L+ + H RL + + +
Sbjct: 56 KSIQTSKNIKDSFETIMECYDEELKKKSFKNLKISIDHVDGTMNCKERLDKLENL---NT 112
Query: 150 IVKNLEKIALDFKSDRHSISQRAFE---FFKYMNYQNLSLTDKGNMFLVAKFFKDSALLV 206
N+ K+ + + + A + FF + + G + AK K +++
Sbjct: 113 FEPNICKVLSNARCLSEGVDVPALDSVIFFDGRSAMVDIIQAVGRVMRKAKNKKRGYIIL 172
Query: 207 NIA--RFEMKKIDDSVKNSNPQD 227
IA E+K +D++VKN+N Q+
Sbjct: 173 PIALRESEIKNLDEAVKNTNFQN 195
Score = 23.9 bits (50), Expect = 7.2
Identities = 32/142 (22%), Positives = 59/142 (41%), Gaps = 17/142 (11%)
Query: 84 KDYLYTIKKLFATQKKIIDLEKNYKDLRALKEEFSKDLETDLSHSKKRFELYTRLKSMSK 143
K YL K A + I L +++K+L L +E + +L + + E++T +K
Sbjct: 1007 KGYLEKYKNSLAKEAPRIALSEDFKELSMLGKELA-----ELHLNYESGEMHTSVKHNLL 1061
Query: 144 VFISKSIVKNLEKIALDFKSDRHSISQRAFEFFKYMNYQNLSLTDKGNMFLVAKFFKDSA 203
++ ++ D K DR KY ++ ++ K V SA
Sbjct: 1062 ESAEMEGYYDVIQMKKDKKGDR----------IKYNHHITITQIPKKAFDYVVN--GKSA 1109
Query: 204 LLVNIARFEMKKIDDSVKNSNP 225
+ I R+++ K DS+ +NP
Sbjct: 1110 IDWVIERYQITKDKDSLIENNP 1131
>ref|NP_222912.1| putative [Helicobacter pylori J99]
Length = 916
Score = 25.4 bits (54), Expect = 2.5
Identities = 57/270 (21%), Positives = 100/270 (36%), Gaps = 47/270 (17%)
Query: 108 KDLRALKEEFSKDLETDLSHSKKRFELYTRLKSMSKVFISKSIVKNLEKIALDFKSDRHS 167
K + AL E+ S + +++ Y+ + + FI+ NL + LDF D+
Sbjct: 28 KHVEALGEQCSNFVSIPINNDD-----YSNICTFVSDFINLIASYNLLESFLDFYKDKLK 82
Query: 168 ISQRAFEFFKYMN---YQNLSLTDKGNMFLVAKFFK--DSALLVNIARFEMKKIDDSVKN 222
+S+ E+ N ++ L GN LV F++ + N E K +
Sbjct: 83 LSELVTEYANVTNNLLFKKLIKHLSGNNQLVKNFYQCIREIIKYNAPNKEYKPNQFFIIG 142
Query: 223 SNPQDNLLDKQVWLNLL-----------EHLKRLEEENYCFAKKRKEFL----ETRAMEL 267
Q L L L + LK+LEE + F K +F +T ++
Sbjct: 143 KGKQKQLAKIYSHLKELSASEIKPQDMEDILKKLEELDKIF--KTTDFTKFTPKTEIKDI 200
Query: 268 SKDL--------KFLTQANENDLPI---------YERGQRD---KIIKRCEKSLNFLQKE 307
K++ F Q NE + I +ER + +I C+ N ++
Sbjct: 201 IKEIDEKYPINENFKRQFNEFESNIEKHDEIKKDFERNKESLIREIENHCKNECNSEEEP 260
Query: 308 LQCFKTLLKSASIALENLQNNHQITAVTQD 337
LLK+ +N +H + V++D
Sbjct: 261 EYKINDLLKNIQQICKNYIESHAVNDVSKD 290
>ref|NP_222796.1| putative [Helicobacter pylori J99]
Length = 590
Score = 25.4 bits (54), Expect = 2.5
Identities = 11/46 (23%), Positives = 22/46 (46%)
Query: 322 LENLQNNHQITAVTQDTQENTNALKNTTQDFNKTTNEPTNPNNNYG 367
+ N+ N + T T D N+N + + + N ++ N N++ G
Sbjct: 520 MSNMNNGNDDTGNTNDDMGNSNDMGDDMNNANDMNDDMGNSNDDMG 565
>ref|NP_224128.1| TYPE III RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 969
Score = 25.0 bits (53), Expect = 3.2
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Query: 211 FEMKKIDDSVKNSNPQDNLLDKQVWLNLLEHLKRLEEENYCFAKKRKEFLETR 263
F K D++ K + Q+ L K+ L++L++E Y +K K+FL+ R
Sbjct: 594 FGEKTDDENFKLTLNQNEFLKKE------PELEKLKDEKYLDFEKLKDFLKDR 640
>ref|NP_223560.1| putative [Helicobacter pylori J99]
Length = 524
Score = 25.0 bits (53), Expect = 3.2
Identities = 18/65 (27%), Positives = 28/65 (42%), Gaps = 8/65 (12%)
Query: 25 LKSLLEKTHWEKEKFTPPINEKEL--------NRQLKEVRWFNKETPTSKNTYKKIQKLA 76
L+SL +K KE PP NEK+ +K + +K+ P + K Q +A
Sbjct: 247 LQSLEKKEPQNKEHANPPNNEKKTPPLKEALQMNAIKRDKTLSKKKPEKTPIHAKTQTIA 306
Query: 77 VYKSP 81
+P
Sbjct: 307 PSATP 311
>ref|NP_223449.1| TRIGGER FACTOR [Helicobacter pylori J99]
Length = 451
Score = 25.0 bits (53), Expect = 3.2
Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 9/85 (10%)
Query: 241 HLKRLEEENYCFAKKRKEFLETRAMELSKDLKFLTQANENDLPIYERGQRDKIIKRCEKS 300
H + L + F K ++ A+E++ +L + ANE + + +++K K
Sbjct: 226 HAEHLAGKEALFKVKLRQIQVREALEINDELAKIVLANEENATL-------ELLKERVKG 278
Query: 301 LNFLQKELQCFKTLLKSASIALENL 325
FL+ + + + LK I ENL
Sbjct: 279 QLFLENKARLYNEELKEKLI--ENL 301
>ref|NP_223438.1| putative [Helicobacter pylori J99]
Length = 175
Score = 25.0 bits (53), Expect = 3.2
Identities = 28/104 (26%), Positives = 42/104 (39%), Gaps = 3/104 (2%)
Query: 20 DHLDSLKSLLEKTHWEKEKFTPPINEKELNRQLKEVRWFNKETPTSKNTYKKIQKLAVYK 79
DHL L L EK + P +KE N LK+ + ET KK V+
Sbjct: 62 DHLKDLNDLHEKIKHLRLILEPKPKDKENNPNLKDHQ--GSETIEIGEAIKKALGDPVFP 119
Query: 80 SPLIKDYLYTIKKLFA-TQKKIIDLEKNYKDLRALKEEFSKDLE 122
+ L K+L + Q +ID++ L L+ E K ++
Sbjct: 120 QDALDAALQIDKQLDSFKQDNLIDVKPLKDVLAQLEAELRKAID 163
>ref|NP_223699.1| 30S RIBOSOMAL PROTEIN S1 [Helicobacter pylori J99]
Length = 552
Score = 24.6 bits (52), Expect = 4.2
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 244 RLEEENYCFAKKRKEFLET---RAMELSKDLKFLTQ 276
R+++EN+ RK F E R +E+SK+L T+
Sbjct: 166 RVDKENHSINISRKRFFEVNDKRQLEISKELLEATE 201
>ref|NP_223662.1| putative [Helicobacter pylori J99]
Length = 668
Score = 24.6 bits (52), Expect = 4.2
Identities = 11/37 (29%), Positives = 18/37 (47%), Gaps = 3/37 (8%)
Query: 337 DTQENTNALKNTTQDFNKTTNEPTNPN---NNYGMDF 370
DT + N+ T+ ++N TNP+ NNY +
Sbjct: 302 DTNNSNNSTNTTSPTNGSSSNNATNPSSQENNYSSQY 338
>ref|NP_223502.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUBUNIT) [Helicobacter
pylori J99]
Length = 875
Score = 24.6 bits (52), Expect = 4.2
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 304 LQKELQCFKTLLKSASIA-LENLQNNHQITAVTQDTQENTNALKNTTQDF 352
L+K Q FK IA + + N +I A+ + E+T L +++DF
Sbjct: 426 LKKYYQAFKEEKHDLKIATIFSYSANEEIEALEDENNESTAGLDKSSRDF 475
>ref|NP_223264.1| methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
Length = 433
Score = 24.6 bits (52), Expect = 4.2
Identities = 25/122 (20%), Positives = 50/122 (40%), Gaps = 15/122 (12%)
Query: 1 MGSATSQIESLKKRENALFDHLDSLKSLLEKTHWEKEKFTPPINEKELNRQLKEVRWFNK 60
M +ATS +SL +R N + + + + E+T N LN ++ R +
Sbjct: 173 MQNATSLADSLNQRSNEITQVISLIDDIAEQT-----------NLLALNAAIEAAR-AGE 220
Query: 61 ETPTSKNTYKKIQKLAVYKSPLIKDYLYTIKKLFATQKKIIDLEKNYKDLRALKEEFSKD 120
+++KLA K+ +K + Q++ D++ N D+ ++ D
Sbjct: 221 HGRGFAVVADEVRKLAEKTQKATKEIAVVVKSM---QQEANDIQTNTHDINSIVGSIKGD 277
Query: 121 LE 122
+E
Sbjct: 278 VE 279
>ref|NP_224140.1| putative TYPE I RESTRICTION ENZYME (SPECIFICITY SUBUNIT)
[Helicobacter pylori J99]
Length = 624
Score = 24.3 bits (51), Expect = 5.5
Identities = 25/93 (26%), Positives = 41/93 (43%), Gaps = 8/93 (8%)
Query: 168 ISQRAFEFFKYMNYQ-NLSLTDKGNMFLVAKFFKDSALLVNIARFEMKKIDD---SVKNS 223
I ++AFE + + NLS + N+ L+ + + NI + +D S+KN
Sbjct: 340 IGRKAFENLAQGSTRYNLSKSGFNNVCLILPPLNEQIAIANI----LSDVDSEIISLKNK 395
Query: 224 NPQDNLLDKQVWLNLLEHLKRLEEENYCFAKKR 256
Q + K + LL KRL+ N + K R
Sbjct: 396 KRQFENVKKALSFELLSQRKRLKGFNQNWQKVR 428
>ref|NP_224083.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 678
Score = 24.3 bits (51), Expect = 5.5
Identities = 15/48 (31%), Positives = 25/48 (51%), Gaps = 2/48 (4%)
Query: 286 ERGQRD--KIIKRCEKSLNFLQKELQCFKTLLKSASIALENLQNNHQI 331
E G+RD KI+++ L Q L+ ++++ S L+N NN I
Sbjct: 266 ENGERDGDKILRKIRSFLERKQLPLEKRESIISSLEPLLKNENNNKAI 313
>ref|NP_223913.1| FLAGELLAR FUNCTIONAL PROTEIN [Helicobacter pylori J99]
Length = 803
Score = 24.3 bits (51), Expect = 5.5
Identities = 29/122 (23%), Positives = 55/122 (44%), Gaps = 11/122 (9%)
Query: 134 LYTRLKSMSKVFISKSIVKNLEKIALDFKSDRHS-ISQR--AFEFFKYMNYQNLSLTDKG 190
LY K++ + K V+ ++I L++K+ R++ ++Q A E + + N ++ K
Sbjct: 274 LYYVAKALDENNNYKQAVRYYKRILLEYKNSRYAPLAQMRLAIEAAEGSDLSNANMLFKE 333
Query: 191 NMFLVAKFFKDSALLVNIARFEM--------KKIDDSVKNSNPQDNLLDKQVWLNLLEHL 242
S + +N A E+ K + D V SNP + ++ L LL+ L
Sbjct: 334 AFSNAKDKESASEIALNWAEAEINYQNFNNAKYLIDKVVQSNPDYLSMHSELALELLKLL 393
Query: 243 KR 244
K+
Sbjct: 394 KK 395
>ref|NP_223820.1| putative Outer membrane function [Helicobacter pylori J99]
Length = 643
Score = 24.3 bits (51), Expect = 5.5
Identities = 15/40 (37%), Positives = 22/40 (54%), Gaps = 3/40 (7%)
Query: 321 ALENLQNNHQITAVTQDTQE-NTNALKNTTQDFNKTTNEP 359
A+ ++ +N Q + Q+TQ+ N N KN TQ N N P
Sbjct: 301 AISDMISNAQ--KIVQETQQLNANQPKNITQPNNFNLNSP 338
>ref|NP_223799.1| UDP-N-ACETYLGLUCOSAMINE--N-ACETYLMURAMYL-(PENTAPEPTIDE)
PYROPHOSPHORYL-UNDECAPRENOL N-ACETYLGLUCOSAMINE
TRANSFERASE [Helicobacter pylori J99]
Length = 353
Score = 24.3 bits (51), Expect = 5.5
Identities = 16/67 (23%), Positives = 28/67 (40%), Gaps = 4/67 (5%)
Query: 235 WLNLLEHLKRLEEENYCFAKKRKEFLETRAMELSKDLKFLTQANENDLPIYERGQRDKII 294
+ N+LE E+EN C+ + E L + E+ + L +L + KI
Sbjct: 284 YYNVLE----FEKENLCYVVPQNELLPKKLFEVIRKLNQKDDQGNKNLTTISAKLQQKIA 339
Query: 295 KRCEKSL 301
K K++
Sbjct: 340 KDGAKTI 346
>ref|NP_223797.1| VALYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 872
Score = 24.3 bits (51), Expect = 5.5
Identities = 15/46 (32%), Positives = 25/46 (53%), Gaps = 1/46 (2%)
Query: 292 KIIKRCEKSLNFLQKELQCFKTLLKSASIAL-ENLQNNHQITAVTQ 336
++IK C SL L+ L+ +LK AS+ L E ++N ++ Q
Sbjct: 726 EVIKDCIVSLRRLKIMLETPPIVLKEASVGLREKIENTERLQNYAQ 771
>ref|NP_223781.1| ATP synthase F0, subunit b [Helicobacter pylori J99]
Length = 171
Score = 24.3 bits (51), Expect = 5.5
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 250 YCFAKKRKEFLETRAMELSKDLK 272
Y AK+ + FL ++++E+SK L+
Sbjct: 45 YFLAKRLRSFLHSKSLEISKRLE 67
>ref|NP_223063.1| putative [Helicobacter pylori J99]
Length = 207
Score = 24.3 bits (51), Expect = 5.5
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
Query: 78 YKSPLIKDYLYTIKKLFATQKKI-----IDLEKNYKDLRALKEEFSKDLE 122
+K L + Y +K A I E++ KDL+A+KE K +E
Sbjct: 63 FKKALAQQIAYFLKDKSALTFNISGNVFFSFEESPKDLKAIKERLKKTIE 112
>ref|NP_222814.1| putative [Helicobacter pylori J99]
Length = 253
Score = 24.3 bits (51), Expect = 5.5
Identities = 18/67 (26%), Positives = 33/67 (48%), Gaps = 5/67 (7%)
Query: 250 YCFAKKRKEFLETRAMELSKDLKFLTQANENDLP----IYERGQRDKIIKRCEKSL-NFL 304
Y F FLE + + S+ L+ NE+D P I + ++ +I+ + ++ L L
Sbjct: 8 YLFLSLNPLFLEAKEITWSQFLENFKNKNEDDKPKPLTIDKNNEKQQILDKNQQILKRAL 67
Query: 305 QKELQCF 311
+K L+ F
Sbjct: 68 EKSLKFF 74
>ref|NP_224045.1| FORMYLTETRAHYDROFOLATE HYDROLASE [Helicobacter pylori J99]
Length = 293
Score = 23.9 bits (50), Expect = 7.2
Identities = 15/42 (35%), Positives = 20/42 (46%)
Query: 84 KDYLYTIKKLFATQKKIIDLEKNYKDLRALKEEFSKDLETDL 125
K+ L TIK L K DL K +R L +F+K E +
Sbjct: 157 KEVLATIKDLELKHKVSADLLVLAKYMRILSHDFTKRYENQI 198
>ref|NP_223965.1| putative [Helicobacter pylori J99]
Length = 412
Score = 23.9 bits (50), Expect = 7.2
Identities = 21/79 (26%), Positives = 35/79 (43%), Gaps = 13/79 (16%)
Query: 46 KELNRQLKEVRWFNKETPTSKNTYKKIQKLAVYKSPLIKDYLYTIKKLFATQKKIIDLEK 105
K + ++ KE F E +KN K + LA L +KKL QK + + K
Sbjct: 306 KLVEQKKKESLAFKSEVENAKN---KTRHLA----------LKLLKKLETLQKNLESINK 352
Query: 106 NYKDLRALKEEFSKDLETD 124
K + + ++ DL+T+
Sbjct: 353 IIKQNEKIAQIYALDLKTN 371
>ref|NP_223691.1| putative S/N-oxide reductase [Helicobacter pylori J99]
Length = 796
Score = 23.9 bits (50), Expect = 7.2
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 4/36 (11%)
Query: 97 QKKIIDLEKNYKDLRALKEEF---SKDLETDLSHSK 129
+K ++ +KN+K+LR +EEF S D+ DL+ K
Sbjct: 87 RKSFLENKKNHKELRG-REEFVRVSWDMALDLAAKK 121
>ref|NP_223293.1| Hydrogenase, large subunit [Helicobacter pylori J99]
Length = 578
Score = 23.9 bits (50), Expect = 7.2
Identities = 21/81 (25%), Positives = 30/81 (36%), Gaps = 2/81 (2%)
Query: 176 FKYMNYQNLSLTDKGNMFLVAKFFKDSALLVNIARFEMKKIDDSVKNSNPQDNLLDKQVW 235
FKY Y T G + V K D A ++ F NP+ NL+ +
Sbjct: 136 FKYSPYP--INTGAGELKAVQKRLNDFAKSGSLGPFSNGYYGHKTYRLNPEQNLIVLSHY 193
Query: 236 LNLLEHLKRLEEENYCFAKKR 256
L LLE + + F K+
Sbjct: 194 LKLLEIQREAAKMTAIFGAKQ 214
>ref|NP_223252.1| putative [Helicobacter pylori J99]
Length = 978
Score = 23.9 bits (50), Expect = 7.2
Identities = 15/52 (28%), Positives = 22/52 (41%), Gaps = 2/52 (3%)
Query: 318 ASIALENLQNNHQITAVTQDTQENTNALKNTTQDFNKTTNEPTNPNNNYGMD 369
A IAL+ Q N + ++ Q NTN N N +P N+ +D
Sbjct: 436 AKIALDLGQKNLSLDSLVHKIQVNTN--NNINMRSYDPNNTQEDPQTNFTLD 485
>ref|NP_224081.1| DNA POLYMERASE I [Helicobacter pylori J99]
Length = 897
Score = 23.5 bits (49), Expect = 9.3
Identities = 11/27 (40%), Positives = 16/27 (58%)
Query: 128 SKKRFELYTRLKSMSKVFISKSIVKNL 154
SK EL RL S+ K++ + + KNL
Sbjct: 199 SKNAKELLQRLGSLEKIYENLDLAKNL 225
>ref|NP_223692.1| putative [Helicobacter pylori J99]
Length = 196
Score = 23.5 bits (49), Expect = 9.3
Identities = 23/106 (21%), Positives = 52/106 (48%), Gaps = 18/106 (16%)
Query: 47 ELNRQLKEVRWFNKETPTSKNTYKKI-----QKLAVYKSP--LIKDYLYTIKKLFATQKK 99
++N + E + K T N + K+ + ++ +K+ +KD L ++++++ KK
Sbjct: 98 DMNGRSLEPVFVEKTINTILNLHDKVISAKDETISAFKNENMFLKDALISMQEVYEEDKK 157
Query: 100 IIDLEKNYKDLRALKEEFSKDLETDLSHSKKRFEL-YTRLKSMSKV 144
IDL L +E ++ E ++ K+++ L + ++ MS V
Sbjct: 158 TIDL---------LHDELNQARE-EIEFMKRKYRLMWGKVADMSSV 193
>ref|NP_222998.1| putative [Helicobacter pylori J99]
Length = 290
Score = 23.5 bits (49), Expect = 9.3
Identities = 23/108 (21%), Positives = 49/108 (45%), Gaps = 9/108 (8%)
Query: 85 DYLYTIKKLFATQKKIIDLEKNY------KDLRALKEEFSKDLETDLSHSKKRFELYTRL 138
DY+Y+I++L A + K +KN+ + E+ S ++ + K + L ++
Sbjct: 116 DYVYSIEELIALKGKKYHKKKNHLNQFLTNHANFVYEKISPQNRKEVLEASKAWFLESQT 175
Query: 139 KSMSKVFISKSIVKNLEKI-ALDFKSDRHSISQR--AFEFFKYMNYQN 183
+ + +K I LE +LD K ++ +F F + +N ++
Sbjct: 176 DDIGLINENKGIQSVLENYESLDLKGGLIRVNGEIVSFSFGEVLNEES 223
>ref|NP_222988.1| putative [Helicobacter pylori J99]
Length = 478
Score = 23.5 bits (49), Expect = 9.3
Identities = 9/38 (23%), Positives = 23/38 (59%)
Query: 290 RDKIIKRCEKSLNFLQKELQCFKTLLKSASIALENLQN 327
+++I+ E N ++++ F+T +K+ + L +L+N
Sbjct: 397 KNEIVNHYENLANTFNRKIEIFQTDIKNPIMYLNSLRN 434
>ref|NP_222950.1| putative histidine kinase sensor protein [Helicobacter pylori J99]
Length = 381
Score = 23.5 bits (49), Expect = 9.3
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 9/94 (9%)
Query: 70 KKIQKLAVYKSPLIKDYLYTIKKLFATQKKIIDLEKNYKDLRALKEEFSKDLETDLSHSK 129
KK ++L K P +K+ ++ K +++ E N L K + S+DL + S+ K
Sbjct: 2 KKSKRL---KRPYLKNSHLKHSDKASSFKGLLENENNVISLENFKPKESEDLLENFSNKK 58
Query: 130 KRFELYTRLKSMSKVFISKSIVKNLEKIALDFKS 163
EL L FI +S +EK D+K+
Sbjct: 59 DMQELLELLNQ----FILQSY--KVEKEFKDYKA 86
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.315 0.131 0.359
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 432,404
Number of Sequences: 1491
Number of extensions: 22697
Number of successful extensions: 200
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 146
Number of HSP's gapped (non-prelim): 99
length of query: 370
length of database: 494,079
effective HSP length: 79
effective length of query: 291
effective length of database: 376,290
effective search space: 109500390
effective search space used: 109500390
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 49 (23.5 bits)