BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645619|ref|NP_207795.1| hypothetical protein
[Helicobacter pylori 26695]
(273 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223659.1| putative [Helicobacter pylori J99] 108 2e-25
ref|NP_223544.1| IS606 TRANSPOSASE [Helicobacter pylori J99] 34 0.004
ref|NP_223375.1| putative [Helicobacter pylori J99] 31 0.040
ref|NP_223170.1| DNA POLYMERASE III, BETA CHAIN [Helicobact... 29 0.12
ref|NP_223120.1| putative [Helicobacter pylori J99] 29 0.12
ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helico... 29 0.15
ref|NP_223645.1| putative [Helicobacter pylori J99] 28 0.26
ref|NP_223856.1| putative role in outermembrane permeabilit... 28 0.34
ref|NP_223335.1| INTEGRASE-RECOMBINASE PROTEIN (XERCD FAMIL... 28 0.34
ref|NP_223204.1| cag island protein [Helicobacter pylori J99] 27 0.44
ref|NP_223887.1| RIBONUCLEASE II FAMILY PROTEIN [Helicobact... 26 0.99
ref|NP_223331.1| putative [Helicobacter pylori J99] 26 0.99
ref|NP_223181.1| 50S RIBOSOMAL PROTEIN L9 [Helicobacter pyl... 26 0.99
ref|NP_223382.1| putative TRANSCRIPTIONAL REGULATOR [Helico... 26 1.3
ref|NP_223147.1| putative Outer membrane protein [Helicobac... 26 1.3
ref|NP_224130.1| ATP-DEPENDENT DNA HELICASE [Helicobacter p... 25 2.9
ref|NP_222770.1| Proline/pyrroline-5-carboxylate dehydrogen... 25 2.9
ref|NP_224003.1| putative [Helicobacter pylori J99] 24 3.8
ref|NP_224139.1| putative [Helicobacter pylori J99] 24 4.9
ref|NP_223562.1| putative FLAGELLAR BASAL-BODY/ROD/HOOKPROT... 24 4.9
ref|NP_223534.1| putative [Helicobacter pylori J99] 23 6.4
ref|NP_223174.1| putative Outer membrane protein [Helicobac... 23 6.4
ref|NP_223173.1| putative [Helicobacter pylori J99] 23 6.4
ref|NP_222895.1| putative [Helicobacter pylori J99] 23 6.4
>ref|NP_223659.1| putative [Helicobacter pylori J99]
Length = 677
Score = 108 bits (269), Expect = 2e-25
Identities = 65/192 (33%), Positives = 104/192 (53%), Gaps = 19/192 (9%)
Query: 67 VVIKNIGNMTRLHSKRAMDYIAKHGELVRDEFFNEVNYNDIAEQWNEQFEKLLENKSRVK 126
V+IKNIG M R H + A++Y ++ E +E F E + I E W F+ ++
Sbjct: 70 VLIKNIGQMKRSHLENALNYALENSETAYNEMFLECDKQFILESWLNDFDL-----TKDY 124
Query: 127 NCALHLVFSIDENCNEKNLKALELSVYQTLTNTLGYDYPFIMKLHTHQNNPHAHVIINKT 186
N +HLVFSI + +E+ ++ L S +++L L +Y F + H HQ++ H H INKT
Sbjct: 125 NETMHLVFSIKDKPDEETMQGLLHSTWESLKIRLP-EYKFALVPHAHQDHAHIHCFINKT 183
Query: 187 NKITNKQLCFNSKDSCKEFYHTLRETF----------KDYLFANSKGELQYSNTPNIYKA 236
N++T ++L F ++ CKEF++ LR F ++YL+ N E + NI
Sbjct: 184 NQLTRRRLRFKGREDCKEFFNELRSEFAYRLNEHLLSEEYLYVN---EPKLKELDNIKLQ 240
Query: 237 IKDIETELDALE 248
++D+E E ALE
Sbjct: 241 LQDLEKEEKALE 252
>ref|NP_223544.1| IS606 TRANSPOSASE [Helicobacter pylori J99]
Length = 442
Score = 34.3 bits (77), Expect = 0.004
Identities = 36/153 (23%), Positives = 64/153 (41%), Gaps = 12/153 (7%)
Query: 5 KSYSKNFESDELFDYEIIKPKKTLKIQYTYAKRYYKEVEKFAKNLTQLTQEEFMRLREPQ 64
K YS + + EL EI + T ++ TY+K Y ++K +K +F RL+ Q
Sbjct: 217 KRYSTDMK--ELLGIEIDEELDTKRLIPTYSKLY--SLKKHSK--------KFKRLQRKQ 264
Query: 65 KQVVIKNIGNMTRLHSKRAMDYIAKHGELVRDEFFNEVNYNDIAEQWNEQFEKLLENKSR 124
+ V+K+ N T+L + + Y+ I + ++QFE ++ +
Sbjct: 265 SRRVLKSKQNKTKLGGNFYKTQKKLNQVFDKSSHQKTDRYHKITSELSKQFELIVVEDLQ 324
Query: 125 VKNCALHLVFSIDENCNEKNLKALELSVYQTLT 157
VKN + + N L S YQ ++
Sbjct: 325 VKNMTKRAKLKNVKQKSGLNQSILNTSFYQIIS 357
>ref|NP_223375.1| putative [Helicobacter pylori J99]
Length = 140
Score = 30.8 bits (68), Expect = 0.040
Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 13 SDELFDYEIIKPKKTLKIQYTYAKRYYKEVEKFA-KNLTQLTQEEFMRLRE 62
S+E DY + K+ + AK++ + A KNL+++++E+F ++RE
Sbjct: 40 SNEAIDYRMEVSKRLKALSAEDAKKFRANFSRIARKNLSKMSEEDFKKMRE 90
>ref|NP_223170.1| DNA POLYMERASE III, BETA CHAIN [Helicobacter pylori J99]
Length = 374
Score = 29.3 bits (64), Expect = 0.12
Identities = 16/80 (20%), Positives = 39/80 (48%)
Query: 11 FESDELFDYEIIKPKKTLKIQYTYAKRYYKEVEKFAKNLTQLTQEEFMRLREPQKQVVIK 70
F++DE ++ +I PK +L+I + +K++ + + + + ++ QK +
Sbjct: 110 FDADEFPEFPVIDPKVSLEINAPFLVDAFKKIAPVIEQTSHKRELAGVLMQFNQKHQTLS 169
Query: 71 NIGNMTRLHSKRAMDYIAKH 90
+G T+ S ++ I+ H
Sbjct: 170 VVGTDTKRLSYTQLEKISIH 189
>ref|NP_223120.1| putative [Helicobacter pylori J99]
Length = 416
Score = 29.3 bits (64), Expect = 0.12
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 12/62 (19%)
Query: 120 ENKSRVKNCALHLVFSIDENCNEKNLKALELSVYQTLTNTLGYDYPFIMKLHTHQNNPHA 179
+NK R + AL ++F CN +LKALE++V + Y ++ Q NPH+
Sbjct: 5 KNKKRYYHLALGILF-----CNGLSLKALEIAVKP-------FGYLGLLYNQGTQKNPHS 52
Query: 180 HV 181
+V
Sbjct: 53 YV 54
>ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helicobacter pylori J99]
Length = 949
Score = 28.9 bits (63), Expect = 0.15
Identities = 27/108 (25%), Positives = 43/108 (39%), Gaps = 7/108 (6%)
Query: 24 PKKTLKIQYTYAKRYYKEVEKFAKNLTQLTQEEFMRLREPQKQVVIKNIGNMTRLHS--K 81
PK Q AK+ +E++K + L +LTQ N+ N + S K
Sbjct: 143 PKAVSHSQIEKAKQKLQEIQKSREALNKLTQSNTNTTNNANS---ASNVSNAKKEISEVK 199
Query: 82 RAMDYIAKHGELVRDEFFNEVNYNDIAEQWNEQFEKLLENKSRVKNCA 129
+ I +H + R F + ND E NE + E+K ++ A
Sbjct: 200 KQEQEIKRHENIKRRTGFRVIKRNDETE--NETENSVTESKKPTQSAA 245
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 28.1 bits (61), Expect = 0.26
Identities = 34/143 (23%), Positives = 61/143 (41%), Gaps = 35/143 (24%)
Query: 10 NFESDELFDYEIIKPKKTLKIQYTYAKRYYKEVEKFAKNLTQLTQEEFMRLREPQKQVVI 69
+ +++E DYE+IK KEVE +N + + +L+E KQ+
Sbjct: 2097 DLKNEESKDYELIK---------------VKEVEPLKENASMSEELTHKKLKEQNKQIAE 2141
Query: 70 KNIGNMTRLHSKRAMDYIAKHGELVRDEFFNEVNYNDIAEQWNEQFEKLLENKSRVKNCA 129
+N K +D I K +F + +N + E E+ KLLE K V N A
Sbjct: 2142 QN---------KEKLDAIKK-------QFASNLNTLFVNE---EEDYKLLEYKGFVVN-A 2181
Query: 130 LHLVFSIDENCNEKNLKALELSV 152
+ ++ + + K++ + S+
Sbjct: 2182 YKTKYQVEFSLSPKDIPNIAYSL 2204
>ref|NP_223856.1| putative role in outermembrane permeability [Helicobacter pylori
J99]
Length = 766
Score = 27.7 bits (60), Expect = 0.34
Identities = 26/109 (23%), Positives = 45/109 (40%), Gaps = 16/109 (14%)
Query: 91 GELVRDEFFNEVNYNDIAEQWNEQFEKLLENKSRVKNCALHLVFSID-----ENCNEKNL 145
G V F VN D+A ++N+ F + L +F+I +N+
Sbjct: 475 GNFVSSNFSMYVN-TDLAREYNKLFHTI----------QLEAIFNIPYYTFKNGLFSQNM 523
Query: 146 KALELSVYQTLTNTLGYDYPFIMKLHTHQNNPHAHVIINKTNKITNKQL 194
AL + T+ L DY + +L+ NP++ + + +NK N L
Sbjct: 524 YALSTQALNSYTSPLLRDYDYQGRLYDSVWNPNSILPSDASNKTVNLTL 572
>ref|NP_223335.1| INTEGRASE-RECOMBINASE PROTEIN (XERCD FAMILY) [Helicobacter pylori
J99]
Length = 356
Score = 27.7 bits (60), Expect = 0.34
Identities = 21/71 (29%), Positives = 30/71 (41%), Gaps = 2/71 (2%)
Query: 119 LENKSRVKNCALHLVFSIDENCNEKNLKALELSVYQTLTNTLGYDYPFIMKLHTHQNNPH 178
L K + L L ID+ +KN K+ ++ TL N G + KL TH NN
Sbjct: 116 LATKKNYRIALLGLFSYIDKQNQDKNEKSYIYNI--TLKNISGVNQSAGNKLPTHLNNEE 173
Query: 179 AHVIINKTNKI 189
+ +KI
Sbjct: 174 LEKFLESIDKI 184
>ref|NP_223204.1| cag island protein [Helicobacter pylori J99]
Length = 306
Score = 27.3 bits (59), Expect = 0.44
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Query: 29 KIQYTYAKRYYKEVEKFAKNLTQLTQEEFMRLREPQKQVVIKNIGNMTRLHSKRAMDYIA 88
KI+ Y + KE+ K K E +R + + + KNI + ++ A
Sbjct: 44 KIKTLYQRHDDKEITKEEKEFATNALREKLRNDRARVEQIQKNIEAFEKKNNSSVQKKAA 103
Query: 89 KHGELVRDEFFNEVNYNDIAEQWN 112
KH L + NE+N N + + N
Sbjct: 104 KHRGL---QELNEINANPLNDNPN 124
>ref|NP_223887.1| RIBONUCLEASE II FAMILY PROTEIN [Helicobacter pylori J99]
Length = 644
Score = 26.2 bits (56), Expect = 0.99
Identities = 9/12 (75%), Positives = 12/12 (100%)
Query: 14 DELFDYEIIKPK 25
D+LFDYEI++PK
Sbjct: 442 DKLFDYEIVRPK 453
>ref|NP_223331.1| putative [Helicobacter pylori J99]
Length = 1167
Score = 26.2 bits (56), Expect = 0.99
Identities = 14/44 (31%), Positives = 23/44 (51%), Gaps = 3/44 (6%)
Query: 99 FNEVNYNDIAE---QWNEQFEKLLENKSRVKNCALHLVFSIDEN 139
F E+ ND + Q N+ FEKL+ K K+ + +F ++ N
Sbjct: 746 FKEITPNDKGDWINQRNDDFEKLIPLKRDKKSKIFNAIFDLNSN 789
>ref|NP_223181.1| 50S RIBOSOMAL PROTEIN L9 [Helicobacter pylori J99]
Length = 149
Score = 26.2 bits (56), Expect = 0.99
Identities = 16/48 (33%), Positives = 25/48 (51%)
Query: 215 DYLFANSKGELQYSNTPNIYKAIKDIETELDALENRLETIRVLGMKTI 262
++L AN K +L + N YKA + E +ALE + V ++TI
Sbjct: 28 NFLIANQKAKLATNEVINKYKAEVKKKAEKEALEKAQKLQMVETLQTI 75
>ref|NP_223382.1| putative TRANSCRIPTIONAL REGULATOR [Helicobacter pylori J99]
Length = 328
Score = 25.8 bits (55), Expect = 1.3
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 189 ITNKQLCFNSKDSCKEFYHTLRET-FKDYLFANSKGELQYSNTPNIYKAIKDIETELDAL 247
+ K L D EFY F+ L A +KGE+Q S N + +I++ +++
Sbjct: 245 VVKKDLVLEHFDKMVEFYGDRGVIMFRKNLHAYAKGEMQASAFRNCVNTLTEIKSMRESI 304
Query: 248 E 248
E
Sbjct: 305 E 305
>ref|NP_223147.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 371
Score = 25.8 bits (55), Expect = 1.3
Identities = 23/87 (26%), Positives = 43/87 (48%), Gaps = 7/87 (8%)
Query: 114 QFEKLLENKSRVKNCALHLVFSIDENCNEKNLKALELSVYQTLTNTLGYDYPFI--MKLH 171
QF+K L + S + +L L FSI E+N + ++++ + ++ PF+ ++
Sbjct: 2 QFQKTLSSLSLFLSLSLFLSFSI----AEENGAYASVGFEYSISHAVEHNNPFLNQERIQ 57
Query: 172 THQNNPHAHVIINKT-NKITNKQLCFN 197
T N + +N+ N+ITN FN
Sbjct: 58 TISNAQNKIYKLNQVKNEITNMPNTFN 84
>ref|NP_224130.1| ATP-DEPENDENT DNA HELICASE [Helicobacter pylori J99]
Length = 623
Score = 24.6 bits (52), Expect = 2.9
Identities = 47/231 (20%), Positives = 91/231 (39%), Gaps = 52/231 (22%)
Query: 26 KTLKIQYTYAKRYYKEVEKFAKNLTQLTQEEFMRLREPQKQVVIKNIGNMTRLHSKRAMD 85
K LKI + Y+KR+YK +E N + +F + +
Sbjct: 57 KVLKI-FAYSKRFYKNLELVFFNHSAFYYNQF------------------------KTGE 91
Query: 86 YIAKHGELVRDEFFNE--VNYNDIAEQWNE---QFEKLLENKSRVKNCALHLVFSIDENC 140
+ +G+L + F +N I ++ + F+K+ +K +N L + S+ EN
Sbjct: 92 SLFIYGKLEQSSFNQAYIINTPKILTEFGKISLIFKKVKNHKKIQEN--LQKLLSL-ENL 148
Query: 141 NEKNLKALELSVYQTLTNTLGYDYPFIMKLHTHQNNPHAHV-------IINKTNKITNKQ 193
++ +K +V + L F+ T++N P H+ ++ + K+
Sbjct: 149 KKEGVKE---NVARLLLEIFFPTPHFVKDFETNKNFPSQHLNALKYIEMLFYMKNLERKK 205
Query: 194 LCFNSKDSCKEFYHTLRETFKDYLFANSKGELQYSNTPNIYKAIKDIETEL 244
L FN+K +C L+ L + T + AIK+I+++L
Sbjct: 206 LQFNAKIACPNNSERLKAFI---------ASLPFKLTRDQQNAIKEIQSDL 247
>ref|NP_222770.1| Proline/pyrroline-5-carboxylate dehydrogenase [Helicobacter pylori
J99]
Length = 1185
Score = 24.6 bits (52), Expect = 2.9
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 13/78 (16%)
Query: 117 KLLENKSRVKNCALHLVFSID-ENCNEKNLKALELSVYQ-----------TLTNTLGYDY 164
K+ + +KN +H FS + C+ +L LE VY+ TL+ ++G +
Sbjct: 751 KMADRDQAIKN-VIHSAFSNSGQKCSATSLLVLEKEVYEDENFKKTLIDATLSLSVGDPF 809
Query: 165 PFIMKLHTHQNNPHAHVI 182
F K+ + P+ VI
Sbjct: 810 DFKNKIGALADKPNEKVI 827
>ref|NP_224003.1| putative [Helicobacter pylori J99]
Length = 972
Score = 24.3 bits (51), Expect = 3.8
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 161 GYDYPFIMKLHTHQNNPHAHVIINKTNKITNKQLCFNSKDSCKEF 205
G D+ + + + +N H VIIN N N+++ F S K F
Sbjct: 427 GMDFKGLKEAVFYASNGHIEVIINPKN---NQEIAFKLNTSDKVF 468
Score = 23.5 bits (49), Expect = 6.4
Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 11/107 (10%)
Query: 36 KRYYKEVEKFAKNLTQLTQEEFMRLREPQKQVVIKNIGNMTRLHSKRAMDYIAKHGELVR 95
K++ KE+EK+ +N Q +F L K V K+ + + + +L+
Sbjct: 166 KQFEKEIEKYNRNKDYSKQIDFKNL----KSVKNKDFYRAPKDSLMKEIALFYYRADLMS 221
Query: 96 DEFFNE--VNYNDIAEQWNEQFEKLLE----NKSRVKNCALHLVFSI 136
DE E +NY D + E + L E NK+ K A+ + S+
Sbjct: 222 DEESKENLLNYKDCWDN-GENYVILDEAHKGNKTESKRQAIFSLLSL 267
>ref|NP_224139.1| putative [Helicobacter pylori J99]
Length = 208
Score = 23.9 bits (50), Expect = 4.9
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 121 NKSRVKNCALHLVFSIDENCNEKNLKALE-----LSVYQTLTNTLGYDYPFIMKLH 171
N++ ++ LVF DE NE ++ ALE LS + + Y P K H
Sbjct: 102 NETNLERAKEFLVFVDDEKVNEMSVLALENLRVLLSEHNIKNDLAKYAMPESYKTH 157
>ref|NP_223562.1| putative FLAGELLAR BASAL-BODY/ROD/HOOKPROTEIN [Helicobacter pylori
J99]
Length = 605
Score = 23.9 bits (50), Expect = 4.9
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 232 NIYKAIKDIETELDALENRLETIRVLGMKT 261
N Y IK + +D+L N + + LG ++
Sbjct: 7 NAYSGIKTHQFGIDSLSNNIANVNTLGYRS 36
>ref|NP_223534.1| putative [Helicobacter pylori J99]
Length = 614
Score = 23.5 bits (49), Expect = 6.4
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 174 QNNPHAHVIINKTNKITNKQLCFNSKDSCK 203
Q +P ++V NK +K +C+ + CK
Sbjct: 360 QIHPESYVYANKARITNHKGVCYAKEFECK 389
>ref|NP_223174.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 406
Score = 23.5 bits (49), Expect = 6.4
Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 2/68 (2%)
Query: 37 RYYKEVEKFAKNLTQLTQEEFMRLREPQKQVVIKNIGNMTRLHSKRAMDYIAKHGELVRD 96
RYY + T ++ R+ P + + R H +DY AKHG L+
Sbjct: 220 RYYDSKAQEVAGFLLETPVKYTRISSPFSYGRFHPVLKVKRPHY--GVDYAAKHGSLIHS 277
Query: 97 EFFNEVNY 104
V +
Sbjct: 278 ASDGRVGF 285
>ref|NP_223173.1| putative [Helicobacter pylori J99]
Length = 251
Score = 23.5 bits (49), Expect = 6.4
Identities = 18/54 (33%), Positives = 27/54 (49%)
Query: 199 KDSCKEFYHTLRETFKDYLFANSKGELQYSNTPNIYKAIKDIETELDALENRLE 252
KD K TL++ +L AN+K + Y + IY A + L+ LEN L+
Sbjct: 65 KDKEKFELTTLKDEKYHFLGANNKVKTLYELSEMIYYAKRLGLISLENLENTLK 118
>ref|NP_222895.1| putative [Helicobacter pylori J99]
Length = 567
Score = 23.5 bits (49), Expect = 6.4
Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 199 KDSCKEFYHTLRETFKDYLFANSKGELQ--YSNTPNIYKAIKDIETELDALENRLETIRV 256
+ S Y L+ K+ + K +Q S+ N Y+A D+ +E+D L+ + +
Sbjct: 284 RTSTDNTYEKLKAELKEIKKSKLKSFIQSYVSDLKNFYQAFLDLLSEIDTNPTTLKVMLI 343
Query: 257 LGMKTIF 263
+ +F
Sbjct: 344 NRINPLF 350
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.318 0.134 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 316,988
Number of Sequences: 1491
Number of extensions: 15878
Number of successful extensions: 73
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 56
Number of HSP's gapped (non-prelim): 27
length of query: 273
length of database: 494,079
effective HSP length: 76
effective length of query: 197
effective length of database: 380,763
effective search space: 75010311
effective search space used: 75010311
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)