BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645620|ref|NP_207796.1| hypothetical protein
[Helicobacter pylori 26695]
(104 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223550.1| putative [Helicobacter pylori J99] 40 1e-05
ref|NP_223548.1| putative [Helicobacter pylori J99] 32 0.003
ref|NP_222963.1| putative [Helicobacter pylori J99] 27 0.12
ref|NP_223788.1| putative [Helicobacter pylori J99] 25 0.45
ref|NP_224142.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUB... 25 0.59
ref|NP_223684.1| METHIONYL-TRNA SYNTHETASE [Helicobacter py... 24 1.0
ref|NP_223399.1| putative [Helicobacter pylori J99] 24 1.0
ref|NP_223546.1| putative [Helicobacter pylori J99] 23 1.3
ref|NP_223247.1| putative SIDEROPHORE-MEDIATED IRON TRANSPO... 23 1.3
ref|NP_223328.1| OXYGEN-INDEPENDENT COPROPORPHYRINOGEN III ... 23 1.7
ref|NP_223264.1| methyl-accepting chemotaxis protein (MCP) ... 23 1.7
ref|NP_223656.1| putative [Helicobacter pylori J99] 23 2.3
ref|NP_222981.1| putative [Helicobacter pylori J99] 23 2.3
ref|NP_223645.1| putative [Helicobacter pylori J99] 22 3.8
ref|NP_222768.1| putative TYPE II restriction enzyme [Helic... 22 3.8
ref|NP_222723.1| TRANSCRIPTION TERMINATION [Helicobacter py... 22 3.8
ref|NP_223888.1| SHIKIMATE 5-DEHYDROGENASE [Helicobacter py... 21 6.6
ref|NP_223796.1| putative SIGNAL RECOGNITION PARTICLE PROTE... 21 6.6
ref|NP_223722.1| FERROCHELATASE [Helicobacter pylori J99] 21 6.6
ref|NP_223188.1| cag island protein [Helicobacter pylori J99] 21 6.6
ref|NP_224160.1| TYPE II RESTRICTION ENZYME [Helicobacter p... 21 8.6
ref|NP_223994.1| putative [Helicobacter pylori J99] 21 8.6
ref|NP_223987.1| CARBOXYL-TERMINAL PROTEASE [Helicobacter p... 21 8.6
ref|NP_223679.1| arginine decarboxylase [Helicobacter pylor... 21 8.6
>ref|NP_223550.1| putative [Helicobacter pylori J99]
Length = 95
Score = 40.0 bits (92), Expect = 1e-05
Identities = 19/52 (36%), Positives = 36/52 (68%), Gaps = 7/52 (13%)
Query: 7 DYSQYNEKQLHNFLNSIEKQLLKAERDKNKAIKKIQECELQERMIRQVLAQK 58
DY++Y++KQL NFLNSI+ + + +A++K++E + Q++ I++ L K
Sbjct: 8 DYTKYSQKQLFNFLNSIKAK-------QKRALEKLKEIQTQKQRIKKALQFK 52
>ref|NP_223548.1| putative [Helicobacter pylori J99]
Length = 83
Score = 32.3 bits (72), Expect = 0.003
Identities = 12/28 (42%), Positives = 22/28 (77%)
Query: 7 DYSQYNEKQLHNFLNSIEKQLLKAERDK 34
DY++Y++KQL N +N +E+++ +A DK
Sbjct: 8 DYTKYSQKQLFNLINQLEQKISQAFDDK 35
>ref|NP_222963.1| putative [Helicobacter pylori J99]
Length = 351
Score = 26.9 bits (58), Expect = 0.12
Identities = 18/73 (24%), Positives = 34/73 (45%), Gaps = 8/73 (10%)
Query: 21 NSIEKQLLKAER------DKNKAIKKIQE--CELQERMIRQVLAQKHSQEKEPTPSLLNT 72
N++E LLK +R K + ++I+E Q +I ++ EK TP ++
Sbjct: 134 NALEAGLLKGDRILSINHQKIASFREIREIVARSQGELILEIERNNQILEKRLTPKIVAV 193
Query: 73 IASKDDPEYDVSF 85
I+ +DP + +
Sbjct: 194 ISESNDPNEIIKY 206
>ref|NP_223788.1| putative [Helicobacter pylori J99]
Length = 433
Score = 25.0 bits (53), Expect = 0.45
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 12 NEKQLHNFLNSIEKQLLKAERDKNKAIKKIQECELQERMIRQVLAQKHSQEK 63
NEK+L+ L +++ KA +KN+ K QE +L+ M+R L K++Q K
Sbjct: 156 NEKKLNEKLELEREKIEKALHEKNELKFKQQEEQLE--MLRNEL--KNAQRK 203
Score = 20.8 bits (42), Expect = 8.6
Identities = 10/36 (27%), Positives = 18/36 (49%)
Query: 13 EKQLHNFLNSIEKQLLKAERDKNKAIKKIQECELQE 48
E+QL N ++ KAE + ++QE ++E
Sbjct: 187 EEQLEMLRNELKNAQRKAELSSQQFQGEVQELAIEE 222
>ref|NP_224142.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUBUNIT) [Helicobacter
pylori J99]
Length = 991
Score = 24.6 bits (52), Expect = 0.59
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 11/47 (23%)
Query: 14 KQLHNFLNSIEKQLLKAERDKNKAIKKIQEC--ELQERMIRQVLAQK 58
K L NF N E+D+ KA+ KI+E E+++R I + K
Sbjct: 563 KMLQNFFN---------EKDEKKALNKIKEFEEEVKKRFINEPARMK 600
>ref|NP_223684.1| METHIONYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 656
Score = 23.9 bits (50), Expect = 1.0
Identities = 16/68 (23%), Positives = 34/68 (49%), Gaps = 1/68 (1%)
Query: 33 DKNKAIKKIQECELQERMIRQVLAQKHSQEKEPT-PSLLNTIASKDDPEYDVSFGDFNDF 91
+K + I+KI++ E E+ + + +EKE P+ N I+ +D + ++ G +
Sbjct: 510 EKIEKIEKIEKIEKIEKGEEALAEKAEKKEKEKAPPTQENYISIEDFKKVEIKVGLIKEA 569
Query: 92 LQIAKQER 99
+I K +
Sbjct: 570 QRIEKSNK 577
>ref|NP_223399.1| putative [Helicobacter pylori J99]
Length = 404
Score = 23.9 bits (50), Expect = 1.0
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 16 LHNFLNSIEKQLLKAERDKNKAIKKIQECELQER 49
L ++ +K L AE++K + IQ ++QER
Sbjct: 218 LEELVDETKKCLSDAEKNKKRHFLSIQRVKIQER 251
>ref|NP_223546.1| putative [Helicobacter pylori J99]
Length = 68
Score = 23.5 bits (49), Expect = 1.3
Identities = 13/42 (30%), Positives = 25/42 (58%), Gaps = 2/42 (4%)
Query: 9 SQYNEK--QLHNFLNSIEKQLLKAERDKNKAIKKIQECELQE 48
++Y K ++ + I+KQ +A++D+N A K I EL++
Sbjct: 23 AKYQSKVLEIKTQMKEIKKQYSQAKKDENLANKYIPNDELKK 64
>ref|NP_223247.1| putative SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEIN [Helicobacter
pylori J99]
Length = 317
Score = 23.5 bits (49), Expect = 1.3
Identities = 16/63 (25%), Positives = 31/63 (48%), Gaps = 4/63 (6%)
Query: 17 HNFLNSIEKQLLKAERDKNKAIKKIQECELQERMIRQVLAQKHSQEKEPTPSLLNTIASK 76
H L +EK K ++ K KK+ E +++++ I +K +KE P+ L+ + +
Sbjct: 132 HKALKKVEKVEEKKVVEEKKEEKKVVEQKVEQKKIE----EKKPVKKEFDPNQLSFLPKE 187
Query: 77 DDP 79
P
Sbjct: 188 VAP 190
>ref|NP_223328.1| OXYGEN-INDEPENDENT COPROPORPHYRINOGEN III OXIDASE [Helicobacter
pylori J99]
Length = 457
Score = 23.1 bits (48), Expect = 1.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 1 MSNIITDYSQYNEKQLHNFLNSIEKQLLK 29
MSN+ DYS+ EK +F +K+L K
Sbjct: 380 MSNLKLDYSKIEEKFSIDFKAHFKKELEK 408
>ref|NP_223264.1| methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
Length = 433
Score = 23.1 bits (48), Expect = 1.7
Identities = 16/48 (33%), Positives = 27/48 (55%), Gaps = 8/48 (16%)
Query: 5 ITDYSQYNEKQLHNFLNS-------IEKQLLKAERDKNKAIKKIQECE 45
+TD S+Y E ++H +S I+K + + + NK I+KIQ+ E
Sbjct: 387 VTD-SKYLEHKVHLMEDSAKHVKENIDKMFYEKQDELNKIIEKIQKGE 433
>ref|NP_223656.1| putative [Helicobacter pylori J99]
Length = 337
Score = 22.7 bits (47), Expect = 2.3
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 10/53 (18%)
Query: 14 KQLHNFLNSIEKQLLKAERDKNKAIKKIQECELQERMIRQVL----AQKHSQE 62
KQ N +N + + DK + KKI+E + + +++RQ ++HS+E
Sbjct: 93 KQALNLINKEDTE------DKEELAKKIKEIKEKAKVLRQKFMAFEMKEHSKE 139
>ref|NP_222981.1| putative [Helicobacter pylori J99]
Length = 431
Score = 22.7 bits (47), Expect = 2.3
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 8 YSQYNEKQLHNFLNSIEKQLLKAERDKNKAIKKIQECE 45
Y N + +SI K+L++ E + + K IQEC+
Sbjct: 393 YKLGNCLEAKKIFSSIAKELIQNEPELKEHNKIIQECK 430
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 21.9 bits (45), Expect = 3.8
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 5 ITDYSQYNEKQLHNFLNSIEKQLLKAERDKNKAIKK 40
+ + + +E+ H L KQ+ + ++K AIKK
Sbjct: 2117 LKENASMSEELTHKKLKEQNKQIAEQNKEKLDAIKK 2152
>ref|NP_222768.1| putative TYPE II restriction enzyme [Helicobacter pylori J99]
Length = 260
Score = 21.9 bits (45), Expect = 3.8
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 2 SNIITDYSQYNEKQLHNFLNSIEKQLLKA 30
+ +TD+ + Q ++ +N+IE +KA
Sbjct: 188 AKFLTDFGGHQNAQFNDAINTIETPNIKA 216
>ref|NP_222723.1| TRANSCRIPTION TERMINATION [Helicobacter pylori J99]
Length = 138
Score = 21.9 bits (45), Expect = 3.8
Identities = 11/27 (40%), Positives = 16/27 (58%)
Query: 26 QLLKAERDKNKAIKKIQECELQERMIR 52
+LL A N+ IKKI L+E+ I+
Sbjct: 13 ELLYAFESGNEEIKKIASSMLEEKKIK 39
>ref|NP_223888.1| SHIKIMATE 5-DEHYDROGENASE [Helicobacter pylori J99]
Length = 266
Score = 21.2 bits (43), Expect = 6.6
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 81 YDVSFGDFNDFLQIAKQ 97
YD+++G FL +AK+
Sbjct: 209 YDLAYGFLTPFLSLAKE 225
>ref|NP_223796.1| putative SIGNAL RECOGNITION PARTICLE PROTEIN [Helicobacter pylori
J99]
Length = 448
Score = 21.2 bits (43), Expect = 6.6
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 10 QYNEKQLHNFLNSIEKQLLKAERDKNKAIKKIQECELQER 49
Q +EK L L+ ++K LLK + A + +++ E Q +
Sbjct: 19 QDDEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTK 58
>ref|NP_223722.1| FERROCHELATASE [Helicobacter pylori J99]
Length = 335
Score = 21.2 bits (43), Expect = 6.6
Identities = 8/23 (34%), Positives = 15/23 (64%)
Query: 42 QECELQERMIRQVLAQKHSQEKE 64
QECE ++++++ QK+ KE
Sbjct: 222 QECEHHVSLLKELMQQKNIPFKE 244
>ref|NP_223188.1| cag island protein [Helicobacter pylori J99]
Length = 219
Score = 21.2 bits (43), Expect = 6.6
Identities = 9/17 (52%), Positives = 11/17 (63%)
Query: 13 EKQLHNFLNSIEKQLLK 29
EK+ LN IEKQ +K
Sbjct: 117 EKEKKELLNKIEKQKIK 133
>ref|NP_224160.1| TYPE II RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 326
Score = 20.8 bits (42), Expect = 8.6
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 32 RDKNKAIKKIQECELQERMIRQVLAQKHSQEKEPT 66
R KN+ + L M R L +++++ KEPT
Sbjct: 6 RKKNQVTQDSLRKNLFVDMHRMGLIERYNKNKEPT 40
>ref|NP_223994.1| putative [Helicobacter pylori J99]
Length = 168
Score = 20.8 bits (42), Expect = 8.6
Identities = 9/41 (21%), Positives = 22/41 (52%)
Query: 5 ITDYSQYNEKQLHNFLNSIEKQLLKAERDKNKAIKKIQECE 45
+ Y EK+ ++ + +EK L ++ ++ K+++E E
Sbjct: 22 LVGYLYLKEKEFYHKMRRLEKTLDESYQENYLYSKRLRELE 62
>ref|NP_223987.1| CARBOXYL-TERMINAL PROTEASE [Helicobacter pylori J99]
Length = 459
Score = 20.8 bits (42), Expect = 8.6
Identities = 7/15 (46%), Positives = 11/15 (72%)
Query: 57 QKHSQEKEPTPSLLN 71
+K +EKE TP ++N
Sbjct: 415 KKSEEEKEVTPKMIN 429
>ref|NP_223679.1| arginine decarboxylase [Helicobacter pylori J99]
Length = 615
Score = 20.8 bits (42), Expect = 8.6
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 87 DFNDFLQIAKQERERH 102
D ND L+I +Q +ER+
Sbjct: 429 DHNDILRIQEQVQERY 444
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.312 0.129 0.345
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 111,474
Number of Sequences: 1491
Number of extensions: 4395
Number of successful extensions: 26
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of query: 104
length of database: 494,079
effective HSP length: 65
effective length of query: 39
effective length of database: 397,164
effective search space: 15489396
effective search space used: 15489396
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 42 (20.8 bits)