BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645621|ref|NP_207797.1| conjugal transfer protein
(traG) [Helicobacter pylori 26695]
(177 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223191.1| cag island protein, DNA transfer protein [... 45 1e-06
ref|NP_223783.1| putative [Helicobacter pylori J99] 26 0.53
ref|NP_223496.1| putative SUGAR NUCLEOTIDE BIOSYNTHESIS PRO... 25 1.2
ref|NP_223988.1| putative [Helicobacter pylori J99] 23 3.5
ref|NP_223528.1| putative IRON-REGULATED OUTER MEMBRANE PRO... 23 3.5
ref|NP_223414.1| putative [Helicobacter pylori J99] 23 4.5
ref|NP_223315.1| PHOSPHOSERINE PHOSPHATASE [Helicobacter py... 23 4.5
ref|NP_224002.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 22 7.7
ref|NP_222871.1| DELTA-AMINOLEVULINIC ACID DEHYDRATASE [Hel... 22 7.7
>ref|NP_223191.1| cag island protein, DNA transfer protein [Helicobacter pylori J99]
Length = 748
Score = 45.1 bits (105), Expect = 1e-06
Identities = 41/150 (27%), Positives = 77/150 (51%), Gaps = 15/150 (10%)
Query: 16 LFLDEFVRFGKLPFLLEMPALSRSYGVVLIFITQSNALIEKY----YGREDARIVNSTVA 71
+ +DEF G L ++ + Y + F+ QS A +E YGR A+ + ++
Sbjct: 547 MLMDEFTLCGYLETFVKAVGIMAEYNMRPAFVFQSKAQLENDPPLGYGRNGAKTILDNLS 606
Query: 72 YKIIFKMDD---LEYAKQVSEEVGKMTRKTRSHSTEKGQLITGGT-SSIGKEAWDLLSAQ 127
+ + +++ E+ +++S+ +GK TR+ S S + TG T +SI + L++
Sbjct: 607 LNMYYGINNDNYYEHFEKLSKVLGKYTRQDVSRSIDDN---TGKTNTSISNKERFLMTPD 663
Query: 128 DIMNIDKDEVIVLVSGHKAKPLKL-KANYY 156
++M + DE+I+L + KP+K KA YY
Sbjct: 664 ELMTMG-DELIIL--ENTLKPIKCHKALYY 690
>ref|NP_223783.1| putative [Helicobacter pylori J99]
Length = 290
Score = 26.2 bits (56), Expect = 0.53
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 52 ALIEKYYGREDARIVNSTVAYKIIFKMDDLEYAKQVSEEVGKMTRKTRSHSTEKGQLIT 110
ALIE RED + +YK + LE + EE+ K+ +K+R+H +L+T
Sbjct: 118 ALIENIQ-REDLNPLELARSYKEL-----LESYQMTQEELSKIVKKSRAHVANIMRLLT 170
>ref|NP_223496.1| putative SUGAR NUCLEOTIDE BIOSYNTHESIS PROTEIN [Helicobacter pylori
J99]
Length = 333
Score = 25.0 bits (53), Expect = 1.2
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Query: 108 LITGGTSSIGK----EAWDLLSAQDIMNIDKDEV 137
LITGGT S GK + D +A+ I+ +DE+
Sbjct: 14 LITGGTGSFGKRFVRKVLDTTNAKKIIVYSRDEL 47
>ref|NP_223988.1| putative [Helicobacter pylori J99]
Length = 290
Score = 23.5 bits (49), Expect = 3.5
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 122 DLLSAQDIMNIDKDEVIV--LVSGHKAKPLKLKANYYFKNKE 161
+LL++ +I D E ++ + H PL K YY K+KE
Sbjct: 49 NLLTSHEIKFGDAFECLIEQYLKEHSFSPLSKKIPYYNKDKE 90
>ref|NP_223528.1| putative IRON-REGULATED OUTER MEMBRANE PROTEIN [Helicobacter pylori
J99]
Length = 791
Score = 23.5 bits (49), Expect = 3.5
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 74 IIFKMDDLEYAKQVSEEVGKMTRKTRSHSTE 104
+ + +DL YAK + EVG +S++
Sbjct: 542 VYMRQNDLRYAKNIKPEVGSNAEFNIDYSSQ 572
>ref|NP_223414.1| putative [Helicobacter pylori J99]
Length = 417
Score = 23.1 bits (48), Expect = 4.5
Identities = 12/37 (32%), Positives = 19/37 (50%), Gaps = 2/37 (5%)
Query: 40 YGVVLIFITQSNALIEKYYGREDARIVNSTVAYKIIF 76
YG+ I T +NA++ + G D +N A+ IF
Sbjct: 33 YGINTILYTGTNAILSRLVGARDFAQINH--AFSSIF 67
>ref|NP_223315.1| PHOSPHOSERINE PHOSPHATASE [Helicobacter pylori J99]
Length = 207
Score = 23.1 bits (48), Expect = 4.5
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 108 LITGGTSSIGKEAWDLLSAQDIMNIDKDEVIVLVSG 143
L+TG + LL+ Q ++NI KD +V+ G
Sbjct: 130 LVTGHMMFSYSKGEMLLALQRLLNISKDRTLVVGDG 165
>ref|NP_224002.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 649
Score = 22.3 bits (46), Expect = 7.7
Identities = 10/17 (58%), Positives = 12/17 (69%)
Query: 3 SLKESKKFEERVYLFLD 19
SL ESKK+ E+V L D
Sbjct: 24 SLLESKKYNEKVDLIFD 40
>ref|NP_222871.1| DELTA-AMINOLEVULINIC ACID DEHYDRATASE [Helicobacter pylori J99]
Length = 323
Score = 22.3 bits (46), Expect = 7.7
Identities = 19/80 (23%), Positives = 30/80 (36%), Gaps = 12/80 (15%)
Query: 62 DARIVNSTVAYKIIFKMDDLEYAKQVSEEVG------------KMTRKTRSHSTEKGQLI 109
D+ I N + +++M K+ E VG K T SH+ K ++
Sbjct: 38 DSGIKNEISSMPGVYQMSIEPLLKECEELVGLGIKAVLLFGIPKHKDATGSHALNKDHIV 97
Query: 110 TGGTSSIGKEAWDLLSAQDI 129
T I K DL+ D+
Sbjct: 98 AKATREIKKRFKDLIVIADL 117
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.317 0.135 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 184,415
Number of Sequences: 1491
Number of extensions: 7649
Number of successful extensions: 26
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 20
Number of HSP's gapped (non-prelim): 10
length of query: 177
length of database: 494,079
effective HSP length: 72
effective length of query: 105
effective length of database: 386,727
effective search space: 40606335
effective search space used: 40606335
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)